LOC110520411


Basic Information

Item Value
gene id LOC110520411
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65489157 ~ 65491432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597716.2
GTTGCAGCTTGGAAATTAAAACTACATGTCCCAGAAACGTAGCGCAGCCATTTAAAGACATGCCTGGTTCAACCATGTTGTATAAGGAAGGACAGAGTAGGACATACGTGAATCGGAGTCGCTGTGCAAGAGGGCTTACCAGCTAGTTAACCAGAAAAATGTCCACCGTATCTGCTGCCAGCGTCGAGCCCGTTGCAATTGAGGGCACGGAGAAGAAACCAATGAAACCCTGTTGTGCGTGCCCAGAGACGAAGAAAGTTAGGGATGCGTGCATCATTGAGAAGGGCGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGAtttaatataactttatataaTGAGTCATTGTGTTGTTGCTGGCTGGCTGTCTTATAAAGGGACCTGGGATATTCCTCGTGTTTTTATTTATACCTCAACATGAAAGGAAGATGTGATCGCTGCACAGATGGTCATGATGGAAGATATGTTCCACTGAGTGATGTGTTTTTTAATGCTCTGAATTTCAGAATTATGTGAATGTTGTTCTGCTGATTTGAGTGACATAAATATCCTATGCAATTTGAC
>TU325201
TATTTATACAGGGTATGTGTAGAATGGCCTACACTTGTCAATTCAATTTGTTGCAGCTTGGAAATTAAAACTACATGTCCCAGAAACGTAGCGCAGCCATTTAAAGACATGCCTGGTTCAACCATGTTGTATAAGGAAGGACAGAGTAGGACATACGTGAATCGGAGTCGCTGTGCAAGAGGGCTTACCAGCTAGTTAACCAGAAAAATGTCCACCGTATCTGCTGCCAGCGTCGAGCCCGTTGCAATTGAGGGCACGGAGAAGAAACCAATGAAACCCTGTTGTGCGTGCCCAGAGACGAAGAAAGTTAGGGATGCGTGCATCATTGAGAAGGGCGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGAtttaatataactttatataaTGAGTCATTGTGTTGTTGCTGGCTGGCTGTCTTATAAAGGGACCTGGGATATTCCTCGTGTTTTTATTTATACCTCAACATGAAAGGAAGATGTGATCGCTGCACAGATGGTCATGATGGAAGATATGTTCCACTGAGTGATGTGTTTTTTAATGCTCTGAATTTCAGAATTATGTGAATGTTGTTCTGCTGATTTGAGTGACATAAATATCCTATGCAATT
>TU325199
CTGGTTCAACCATGTTGTATAAGGAAGGACAGAGTAGGACATACGTGAATCGGAGTCGCTGTGCAAGAGGGCTTACCAGCTAGTTAACCAGAAAAATGTCCACCGTATCTGCTGCCAGCGTCGAGCCCGTTGCAATTGAGGGCACGGAGAAGAAACCAATGAAACCCTGTTGTGCGTGCCCAGAGACGAAGAAAGTTAGGGATGCGTGCATCATTGAGAAGGGCGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGAtttaatataactttatataaTGAGTCATTGTGTTGTTGCTGGCTGGCTGTCTTATAAAGGGACCTGGGATATTCCTCGTGTTTTTATTTATACCTCAACATGAAAGGAAGATGTGATCGCTGCACAGATGGTCATGATGGAAGATATGTTCCACTGAGTGATGTGTTTTTTAATGCTCTGAATTTCAGAATTATGTGAATGTTGTTCTGCTGATTTGAGTGACATAAATATCCTATGCAATTTGACTCGAGTACTTGATTTTATATGGCAGGATGAAACGCAATTGAATTAATTGTACAGGTAAGAAGTGTTAGGGGTGCAATATTATCCTAATTTTATGCTAAACCATAGACATAACTATACATGATTATACATAACTACAAAAAGGCCGGCTATACTTCCTGTCACCCTGCAAAAACGTCCTGGTAtgacggtcctttgctgttctgctGACTGGTGACAACTGCTCTGGTATGCACTTTGGCTTATAATAACTTCTGCTCCAGCCAAAACTTGGCACATCTGAATTCTTAAAAGGAATTGGATTGCTCAAATGTTTGTGGTAGAAAGTATTGGGGTGCTGGATTCCAAAAGCCATATATTTAAATAAA
>TU325200
CTGGTTCAACCATGTTGTATAAGGAAGGACAGAGTAGGACATACGTGAATCGGAGTCGCTGTGCAAGAGGGCTTACCAGCTAGTTAACCAGAAAAATGTCCACCGTATCTGCTGCCAGCGTCGAGCCCGTTGCAATTGAGGGCACGGAGAAGAAACCAATGAAACCCTGTTGTGCGTGCCCAGAGACGAAGAAAGTTAGGGATGCGTGCATCATTGAGAAGGGCGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGAtttaatataactttatataaTGAGTCATTGTGTTGTTGCTGGCTGGCTGTCTTATAAAGGGACCTGGGATATTCCTCGTGTTTTTATTTATACCTCAACATGAAAGGAAGATGTGATCGCTGCACAGATGGTCATGATGGAAGATATGTTCCACTGAGTGATGTGTTTTTTAATGCTCTGAATTTCAGAATTATGTGAATGTTGTTCTGCTGATTTGAGTGACATAAATATCCTATGCAATT

Function

NR:

description
cytochrome c oxidase copper chaperone-like

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0006825 copper ion transport biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0016531 copper chaperone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597716.2 False 597 mRNA 0.43 4 65489206 65491067
TU325201 False 642 lncRNA 0.42 4 65489157 65491063
TU325199 False 899 lncRNA 0.41 4 65489269 65491432
TU325200 True 530 lncRNA 0.43 4 65489269 65491063

Neighbor

gene id symbol gene type direction distance location
ift88 ift88 coding upstream 102500 65362736 ~ 65386706 (+)
zmym2 LOC106586592 coding upstream 178040 65260200 ~ 65311166 (+)
LOC110520400 NA coding upstream 246559 65241290 ~ 65242647 (+)
LOC118964311 LOC106586591 coding upstream 257861 65217057 ~ 65231345 (+)
LOC110520399 LOC106586589 coding upstream 276392 65192057 ~ 65212814 (+)
popdc2 popdc2 coding downstream 892 65491959 ~ 65503791 (+)
wars2 wars2 coding downstream 91968 65583035 ~ 65599863 (+)
LOC110520416 tbx15 coding downstream 123118 65614185 ~ 65637086 (+)
LOC110520417 gdap2 coding downstream 286129 65777196 ~ 65813495 (+)
LOC118964312 LOC106586611 coding downstream 536566 66027633 ~ 66036299 (+)
G286869 LOC106586566 non-coding upstream 6946 65481281 ~ 65482260 (+)
G286849 LOC106586596 non-coding upstream 34865 65453705 ~ 65454341 (+)
G286843 NA non-coding upstream 44652 65444312 ~ 65444554 (+)
G286824 xpo4 non-coding upstream 78289 65407736 ~ 65410917 (+)
G286726 LOC106582068 non-coding upstream 94421 65394376 ~ 65394785 (+)
G286875 LOC106582073 non-coding downstream 16611 65507678 ~ 65508356 (+)
G286882 LOC106586600 non-coding downstream 19540 65510607 ~ 65512345 (+)
G286879 NA non-coding downstream 42535 65533602 ~ 65534662 (+)
G287085 NA non-coding downstream 67011 65558078 ~ 65558292 (+)
G287093 NA non-coding downstream 73602 65564669 ~ 65564900 (+)
LOC110520396 LOC100136409 other upstream 322626 65161342 ~ 65166580 (+)
G286679 NA other upstream 379569 65109256 ~ 65109637 (+)
G285763 NA other upstream 1181846 64306512 ~ 64307360 (+)
G285203 NA other upstream 1405224 64071432 ~ 64083982 (+)
G288252 NA other downstream 1058755 66549822 ~ 66550487 (+)
G288430 NA other downstream 1240219 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 1292306 66783373 ~ 66787442 (+)
G288674 NA other downstream 1502104 66993171 ~ 66994131 (+)

Expression


Co-expression Network