popdc2 (popdc2)


Basic Information

Item Value
gene id popdc2
gene name popdc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65491959 ~ 65503791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974952.1
ctcactcctccctctctccagcagtGTTATGTTAAGTAGCTGGTCTGCTTTCTGTCTGTGGCTGTACTCCTTGGGTTTCAATTCCAAACATGGTTATCTTTCTAGgggtctttctcctctctctctctctctctctctctctctgctgccaaCTGTGAGCACTCCAGAGCAAACAAATGGACAACTCTACCCTGTTGGAGGCGGTTCTCTACGGCCATCCACCATGCGATGGCTGGACCAACAACACTGAGGGGGCCTTCTACCACCTGGGCAACACCGTCTTGTTTCTTGGGTACATGGGAGGCAGTGGCGCCTATGGCTGCCTGTTCATATTTGGTTTCCTGACGATTGCCTTCACCTGCCTGGCCCTGTGGGGCTGGATGACCATGTGTGGGGTGGATGTGTTCACCTGGAACTTGCTACTGCTGGTGGCCTGTGTGCTCCAGATCTGCCACCTCGTATACAGGCTGCAACAGGATGGCCTGGCCAGCGAGGAGCTGTTGGCCCTCTACTCAGCCGTCTACCAGCCCCTGGACGTTCCCGTACAGGTGTTCAAAGATATTGTGGGGGCCTGTGAGAACAAAGTGCTAGCACTAGGGGTAGAGGAGACGTATGCGGTGGAGGGCAAGACGCCCATCGACCAGCTCTCCTTTCTGCTGTCTGGGAGGATCCGTGTGTCTCTGGATGGACAATTCCTCCATTACATCTTCCCCCACAAGTTCCTGGACTCTCCTGAGTGGGAGTCTCTCCGACCCAACGAAGAGGGGAACTTTCAGGTGACCCTGACAGCGGAGACGGACTGCCGCTACATCTCATGGCGTCGGTGCCGCCTTTACATGCTTCTGTCCAAGGAGCGCTACATTGCCCGCCTCTTCTCCATTATGCTGGGCAGCGACATCGCCGACAAGCTCTACTCACTCAACGACAAGCTCTTCGCAAAGAGCGGTGTGCGCCTCGACATCCGCTTGCCCAGCCTCTACCACGTCCTGGCCCCCTCCTCCCTGGGCAGCGAGGGTGAGGTCTATAGCGGCAGTGGTAGTGGGAGTGCCAGGGACCAGGTAGCCCCAGTGGAGCAGCAGGAAGCAGCAGTGGTAGATGTGGACCCGGTTCCAGCCTACCAGAGGTCAGAGCCTCcaacaccccccaccccccggCTGCAGATCCGAGAGAAGACCCCCACCCCATCTCGGCCAACCCCCTGCCAACCATCCCAGCGCCAGCCCTCAGACATGGAGATGCCATCTGGTGAGGACTCTACCAGCCTGGTCCTGGAAGACTTTGCGGATATGACCGGGTCCTTAATGGATTATGGGAGTGAGAGGGATTATTTGAGGTAGATGGCAGGTTGCTGGAGCTAACACACTGGGCCACTACTTAAGATACATTTGATTCCACAGGAGAGGAAACCACTGGGAGTCTACCATTGCGAtaccagagagggagagcttcCTTGGCCCCTACCGGACACCTCTATGCTGTGATGGTTTCAACCGGATTGGAAACAGTGGACACGTtccaggatttttttttacagtcaGGCTATGCAGATTATCAGATGTCACAACACCTGGCAAAGTGTTTAACATCTCAGGAACCACATTAATATAATTTAGCATTCTTCTGAGGTGAGCAGTGCGACTGCAAAAAAGATGCCCTGGAACACAACCATCACTGCCCTGGGTGGAATCAGACCTCCCCAACACCAAATCCCACTCTCTCACCTTACCTCACTTCCTCTGGTGTCATCTGTGCGTGACAATATAGGAAGGAGTGAACCCCTGGACACTGGACAGAATTATGTTATAAATCTGAATTTATTAGTTAAGGTCACAGACCTCTTTTTATTATTTCACTCACATGTCTCCCATTCATCTGGATGGAAAGCCTTTTGATGTGGATATTGTGTTAGATAGGATTATGATTCAACATTAAAGCAATcatgtgtattttattttttaacaacCGTGGTTGGGTTGGCTAGGCTAGGGGCACGTTAATCGTGTTTGTTTGTGCAGACATAATCTGAGAGAATAAAGTTTGACAGACAGCATGCTAGAAAGGGATTTATCTTCATACTCACATTTTCCAAAACACGATTCCAAATTTAACAGGCATTTGTTTATGTGAATGTGAGATGTCTCACACATTGTACATTTATTTAGTCATTAACATAGAACAAGAGTGTTATGTTTTTGTAAATAAAAATGGGACTACATATACAGATATTTTCATGGGGCCAATGTTTCTTGATAAAGCTCTTGGTGAAAA
>XM_021597715.2
AATAGAAAATCTATAGACAGACAAATCATTGAagggacgagagggagggagagacacacaatgTGAGAAATCCATTCCAATTGTGTTTATGGTGTAATAACCGAATAAAGACACTGTGTACTCCAGCTGTATGTAAGGGAAAAGGGAACAATTTTTTTCAACATTTTCTCAGTTTTGACTGAACTTTTGCAAAATAGACCAACTCCAGTGACAATTGTTCAGTCTCACTGATAAAGCAACAAAAACTTCAAGATTTAGTGGAGGACAACCTTTTTCTACCAGCTTTGACCTCTGGTATCTTTTGTAAACTTTGGAATATAACACATTTTTTTAACTTATTGAACAACTAGATGTTTGGTTTGGAATAACCGCCTCCCTTACCATGTGTGCAGACAACTCTACCCTGTTGGAGGCGGTTCTCTACGGCCATCCACCATGCGATGGCTGGACCAACAACACTGAGGGGGCCTTCTACCACCTGGGCAACACCGTCTTGTTTCTTGGGTACATGGGAGGCAGTGGCGCCTATGGCTGCCTGTTCATATTTGGTTTCCTGACGATTGCCTTCACCTGCCTGGCCCTGTGGGGCTGGATGACCATGTGTGGGGTGGATGTGTTCACCTGGAACTTGCTACTGCTGGTGGCCTGTGTGCTCCAGATCTGCCACCTCGTATACAGGCTGCAACAGGATGGCCTGGCCAGCGAGGAGCTGTTGGCCCTCTACTCAGCCGTCTACCAGCCCCTGGACGTTCCCGTACAGGTGTTCAAAGATATTGTGGGGGCCTGTGAGAACAAAGTGCTAGCACTAGGGGTAGAGGAGACGTATGCGGTGGAGGGCAAGACGCCCATCGACCAGCTCTCCTTTCTGCTGTCTGGGAGGATCCGTGTGTCTCTGGATGGACAATTCCTCCATTACATCTTCCCCCACAAGTTCCTGGACTCTCCTGAGTGGGAGTCTCTCCGACCCAACGAAGAGGGGAACTTTCAGGTGACCCTGACAGCGGAGACGGACTGCCGCTACATCTCATGGCGTCGGTGCCGCCTTTACATGCTTCTGTCCAAGGAGCGCTACATTGCCCGCCTCTTCTCCATTATGCTGGGCAGCGACATCGCCGACAAGCTCTACTCACTCAACGACAAGCTCTTCGCAAAGAGCGGTGTGCGCCTCGACATCCGCTTGCCCAGCCTCTACCACGTCCTGGCCCCCTCCTCCCTGGGCAGCGAGGGTGAGGTCTATAGCGGCAGTGGTAGTGGGAGTGCCAGGGACCAGGTAGCCCCAGTGGAGCAGCAGGAAGCAGCAGTGGTAGATGTGGACCCGGTTCCAGCCTACCAGAGGTCAGAGCCTCcaacaccccccaccccccggCTGCAGATCCGAGAGAAGACCCCCACCCCATCTCGGCCAACCCCCTGCCAACCATCCCAGCGCCAGCCCTCAGACATGGAGATGCCATCTGGTGAGGACTCTACCAGCCTGGTCCTGGAAGACTTTGCGGATATGACCGGGTCCTTAATGGATTATGGGAGTGAGAGGGATTATTTGAGGTAGATGGCAGGTTGCTGGAGCTAACACACTGGGCCACTACTTAAGATACATTTGATTCCACAGGAGAGGAAACCACTGGGAGTCTACCATTGCGAtaccagagagggagagcttcCTTGGCCCCTACCGGACACCTCTATGCTGTGATGGTTTCAACCGGATTGGAAACAGTGGACACGTtccaggatttttttttacagtcaGGCTATGCAGATTATCAGATGTCACAACACCTGGCAAAGTGTTTAACATCTCAGGAACCACATTAATATAATTTAGCATTCTTCTGAGGTGAGCAGTGCGACTGCAAAAAAGATGCCCTGGAACACAACCATCACTGCCCTGGGTGGAATCAGACCTCCCCAACACCAAATCCCACTCTCTCACCTTACCTCACTTCCTCTGGTGTCATCTGTGCGTGACAATATAGGAAGGAGTGAACCCCTGGACACTGGACAGAATTATGTTATAAATCTGAATTTATTAGTTAAGGTCACAGACCTCTTTTTATTATTTCACTCACATGTCTCCCATTCATCTGGATGGAAAGCCTTTTGATGTGGATATTGTGTTAGATAGGATTATGATTCAACATTAAAGCAATcatgtgtattttattttttaacaacCGTGGTTGGGTTGGCTAGGCTAGGGGCACGTTAATCGTGTTTGTTTGTGCAGACATAATCTGAGAGAATAAAGTTTGACAGACAGCATGCTAGAAAGGGATTTATCTTCATACTCACATTTTCCAAAACACGATTCCAAATTTAACAGGCATTTGTTTATGTGAATGTGAGATGTCTCACACATTGTACATTTATTTAGTCATTAACATAGAACAAGAGTGTTATGTTTTTGTAAATAAAAATGGGACTACATATACAGATATTTTCATGGGGCCAATGTTTCTTGATAAAGCTCTTGGTGAAAA

Function

symbol description
popdc2 Predicted to enable cAMP binding activity. Acts upstream of or within cardiac conduction; heart looping; and striated muscle cell differentiation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in sarcolemma. Is expressed in heart rudiment; musculature system; pectoral fin bud; pericardial region; and somite. Orthologous to human POPDC2 (popeye domain containing 2).

NR:

description
popeye domain-containing 2-like isoform X2

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974952.1 False 2268 mRNA 0.50 5 65491959 65503791
XM_021597715.2 True 2480 mRNA 0.48 4 65492148 65503791

Neighbor

gene id symbol gene type direction distance location
LOC110520411 NA coding upstream 892 65489157 ~ 65491432 (+)
ift88 ift88 coding upstream 105253 65362736 ~ 65386706 (+)
zmym2 LOC106586592 coding upstream 180793 65260200 ~ 65311166 (+)
LOC110520400 NA coding upstream 249312 65241290 ~ 65242647 (+)
LOC118964311 LOC106586591 coding upstream 260614 65217057 ~ 65231345 (+)
wars2 wars2 coding downstream 79244 65583035 ~ 65599863 (+)
LOC110520416 tbx15 coding downstream 110394 65614185 ~ 65637086 (+)
LOC110520417 gdap2 coding downstream 273405 65777196 ~ 65813495 (+)
LOC118964312 LOC106586611 coding downstream 523842 66027633 ~ 66036299 (+)
LOC110504495 LOC106586612 coding downstream 604076 66107867 ~ 66161419 (+)
G286869 LOC106586566 non-coding upstream 9699 65481281 ~ 65482260 (+)
G286849 LOC106586596 non-coding upstream 37618 65453705 ~ 65454341 (+)
G286843 NA non-coding upstream 47405 65444312 ~ 65444554 (+)
G286824 xpo4 non-coding upstream 81042 65407736 ~ 65410917 (+)
G286875 LOC106582073 non-coding downstream 3887 65507678 ~ 65508356 (+)
G286882 LOC106586600 non-coding downstream 6816 65510607 ~ 65512345 (+)
G286879 NA non-coding downstream 29811 65533602 ~ 65534662 (+)
G287085 NA non-coding downstream 54287 65558078 ~ 65558292 (+)
G287093 NA non-coding downstream 60878 65564669 ~ 65564900 (+)
LOC110520396 LOC100136409 other upstream 325379 65161342 ~ 65166580 (+)
G286679 NA other upstream 382322 65109256 ~ 65109637 (+)
G285763 NA other upstream 1184599 64306512 ~ 64307360 (+)
G285203 NA other upstream 1407977 64071432 ~ 64083982 (+)
G288252 NA other downstream 1046031 66549822 ~ 66550487 (+)
G288430 NA other downstream 1227495 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 1279582 66783373 ~ 66787442 (+)
G288674 NA other downstream 1489380 66993171 ~ 66994131 (+)

Expression


Co-expression Network