pla1a (pla1a)


Basic Information

Item Value
gene id pla1a
gene name pla1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65503985 ~ 65508384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472975.2
CTCTTAAGTAGATTCCTGCCCTTTTGTGGCCACTGTTGACCAGTAGAGGGTTGAATGACATTTCTAGAACCAAAGTGAATTATTGCATAGCTACAAGGACTGCTGAGAGGGAAAATAAAGTTTCCAAAGCTAAGGATCCGAGGCACAGTTCACCAACACATTTCACCAACCTATCTGGTAAAGCCAAGTTACCATTCTTGATACTCTTCTTTCAAGACAATGGGCTGGAAACTGAAAACAGTGCAAACTATTCTCAGTATTCTAGCCTTCTACATTACATTTGCAGTCGGGGAAGATGAGGAGCCCAGATCAGAATGTGCTGACTTCAACAACACGACCTGGCTGGAGTACCATCAGCAGGGCAGCAAGCTACAGGTGCAGTACCTGCTCTTGACACGCAAGAATACAGACTGTGCCAGCCTCTTCGGTCAGGACTTCCTCAGCAACAACACCTACTTCAACTCCTCCCAACCCACCAAGATAATTGTCCATGGATACAGagcTCTGGGCAGTAAGCCATCCTGGGTGAAGCAGCTGGCCCAGGCTCTGCTGCGGGTGCAGGATGCCAacgtggtggtggtggactggaTCTATGGGGCCTCACTCGCCTACAACATGGTGGTGGAGAACTACAAGGAGGTGGCCATCCAGATCTCTGTCCTCATCAACCAGCTCCAGAACCATGGATGCAAACTGGAGTCATTTCACTTCATTGGGGTTAGTCTTGGGGCACATGTGTCTGGATTCGTGGGGACCCTGTTCAAGGGCAAGATAGGAAGAATTACAGGTCTGGACCCGGCTGGACCCATGTTTAAAAGAGCCGACACATTTGACCGTCTTGACCCCTCAGATGCACTGTTTGTGGAGGCCATCCACACTGACGCCGACTATTTCGGCATCTCCATCTCTGTCGGCCATGCAGACTTCTTCCTAAACGGCGGGATGGACCAAGCAGGTTGCTCGCGCTCCAGGTTTACGTCAATGTATAGCTATGTGATATGTGACCACATGAGGGCGCTCCACATCTACATAAGCGCACTGAACGGGACCTGCCCACTGACTGGCATCCCTTGTTCCAGCTATGAGGACTTCCTCAAGGGGCGCTGTTTAGGCTGCCCAGGCAGATGTCCACGAATAGGGTTATTGGAGAACAGTGGTTTAACAGTCTTTCCTCTTCCTCAACCAAAGAAGCTTTTCCTCCTGACAACCTCTGCACCTCCCTTCTGTGccCATCACATCCTGGTGCAGCTGGAGGTGTTCCTCCTGGACAAGAGCGCCGAGGTGCAGGTGATCCTGAGGACTGGGGGACATCCTGAAACAGAGCAGAGACTCAGGCTacagacggcacCATGTACAGGAGGGTGATAGCCCACCCAGTGCCACTGTGTGAGATAGACTCCATCCAGCTGAAGAACACTGGAGCGCACTTCTACAGGCAGGGAGACATCCACgttgtgtctgtctgcatatcAGAATTCCCCTCTGTCGGAGAAGTGGAGCCATTGTGCGTGAAGAAGATAAACGTAAGGCGAGGATCTCCATGGAACCATGATTTCGTACAGCTGTGTGAGAATTACTGATGtagtaaacacacacatatcCTATAAACCAGCAtgtttctttctctctagcaACCTCCCAATAGTCTGAAACGGtcctttcctcatctcctttccttcatcaTCAATGATGTGGAATGCTTTGATGGGTCTAAGCAGTAAGGAGGAAGCCTATCCTTATAGTTATCATTGGGAATGAAGGAAAGGAAATTAGAAGAGTTTTACTGGGACTAGCtcacgcagaaacacacacatgcagctaaTAGCTCCCATTGCAAACAGCTACACACAAACTTTGCCATCCTATAACCCTAGTCATATGTTACTGATGGACCACCTACAGCCAAACAGATTCCAGAACAGTTCCAAACTACTTCTTTACATTTCTTTAGTATATTCTAACAGCATTAGTATTGATGTACATAATCATTCCAACGCAGCTGAATGTTACTTTATTCAGAGCTTCTGTTGAAGCAAAACAATAAAAGGGTAACTCTGGAA
>XM_021597713.2
CTCTTAAGTAGATTCCTGCCCTTTTGTGGCCACTGTTGACCAGTAGAGGGTTGAATGACATTTCTAGAACCAAAGTGAATTATTGCATAGCTACAAGGACTGCTGAGAGGGAAAATAAAGTTTCCAAAGCTAAGGATCCGAGGCACAGTTCACCAACACATTTCACCAACCTATCTGGTAAAGCCAAGTTACCATTCTTGATACTCTTCTTTCAAGACAATGGGCTGGAAACTGAAAACAGTGCAAACTATTCTCAGTATTCTAGCCTTCTACATTACATTTGCAGTCGGGGAAGATGAGGAGCCCAGATCAGAATGTGCTGACTTCAACAACACGACCTGGCTGGAGTACCATCAGCAGGGCAGCAAGCTACAGGTGCAGTACCTGCTCTTGACACGCAAGAATACAGACTGTGCCAGCCTCTTCGGTCAGGACTTCCTCAGCAACAACACCTACTTCAACTCCTCCCAACCCACCAAGATAATTGTCCATGGATACAGagcTCTGGGCAGTAAGCCATCCTGGGTGAAGCAGCTGGCCCAGGCTCTGCTGCGGGTGCAGGATGCCAacgtggtggtggtggactggaTCTATGGGGCCTCACTCGCCTACAACATGGTGGTGGAGAACTACAAGGAGGTGGCCATCCAGATCTCTGTCCTCATCAACCAGCTCCAGAACCATGGATGCAAACTGGAGTCATTTCACTTCATTGGGGTTAGTCTTGGGGCACATGTGTCTGGATTCGTGGGGACCCTGTTCAAGGGCAAGATAGGAAGAATTACAGGTCTGGACCCGGCTGGACCCATGTTTAAAAGAGCCGACACATTTGACCGTCTTGACCCCTCAGATGCACTGTTTGTGGAGGCCATCCACACTGACGCCGACTATTTCGGCATCTCCATCTCTGTCGGCCATGCAGACTTCTTCCTAAACGGCGGGATGGACCAAGCAGGTTGCTCGCGCTCCAGGTTTACGTCAATGTATAGCTATGTGATATGTGACCACATGAGGGCGCTCCACATCTACATAAGCGCACTGAACGGGACCTGCCCACTGACTGGCATCCCTTGTTCCAGCTATGAGGACTTCCTCAAGGGGCGCTGTTTAGGCTGCCCAGGCAGATGTCCACGAATAGGGTTATTGGAGAACAGTGGTTTAACAGTCTTTCCTCTTCCTCAACCAAAGAAGCTTTTCCTCCTGACAACCTCTGCACCTCCCTTCTGTGccCATCACATCCTGGTGCAGCTGGAGGTGTTCCTCCTGGACAAGAGCGCCGAGGTGCAGGTGATCCTGAGGACTGGGGGACATCCTGAAACAGAGCAGAGACTCAGGCTacagacagacggcacCATGTACAGGAGGGTGATAGCCCACCCAGTGCCACTGTGTGAGATAGACTCCATCCAGCTGAAGAACACTGGAGCGCACTTCTACAGGCAGGGAGACATCCACgttgtgtctgtctgcatatcAGAATTCCCCTCTGTCGGAGAAGTGGAGCCATTGTGCGTGAAGAAGATAAACGTAAGGCGAGGATCTCCATGGAACCATGATTTCGTACAGCTGTGTGAGAATTACTGATGtagtaaacacacacatatcCTATAAACCAGCAtgtttctttctctctagcaACCTCCCAATAGTCTGAAACGGtcctttcctcatctcctttccttcatcaTCAATGATGTGGAATGCTTTGATGGGTCTAAGCAGTAAGGAGGAAGCCTATCCTTATAGTTATCATTGGGAATGAAGGAAAGGAAATTAGAAGAGTTTTACTGGGACTAGCtcacgcagaaacacacacatgcagctaaTAGCTCCCATTGCAAACAGCTACACACAAACTTTGCCATCCTATAACCCTAGTCATATGTTACTGATGGACCACCTACAGCCAAACAGATTCCAGAACAGTTCCAAACTACTTCTTTACATTTCTTTAGTATATTCTAACAGCATTAGTATTGATGTACATAATCATTCCAACGCAGCTGAATGTTACTTTATTCAGAGCTTCTGTTGAAGCAAAACAATAAAAGGGTAACTCTG

Function

symbol description
pla1a Predicted to enable lipase activity. Predicted to be involved in lipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in diencephalon; hindbrain; and midbrain. Orthologous to human PLA1A (phospholipase A1 member A).

NR:

description
phospholipase A1 member A-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13618 PLA1A; phosphatidylserine sn-1 acylhydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472975.2 False 2060 mRNA 0.48 11 65503985 65508384
XM_021597713.2 True 2061 mRNA 0.48 11 65503988 65508384

Neighbor

gene id symbol gene type direction distance location
LOC118944602 NA coding downstream 17184 65485884 ~ 65486801 (-)
hcn5 LOC106586566 coding downstream 19200 65480140 ~ 65484785 (-)
ska3 ska3 coding downstream 27475 65472285 ~ 65476510 (-)
LOC110520406 LOC106586596 coding downstream 44985 65437563 ~ 65459000 (-)
xpo4 xpo4 coding downstream 71832 65392849 ~ 65432153 (-)
hsd3b1 LOC106586600 coding upstream 2214 65510598 ~ 65512345 (-)
LOC110520412 LOC106586598 coding upstream 11830 65520214 ~ 65535280 (-)
LOC110520413 LOC106586602 coding upstream 27430 65535814 ~ 65549415 (-)
trnaa-ugc-4 NA coding upstream 34650 65543034 ~ 65543108 (-)
LOC110504464 NA coding upstream 188194 65696578 ~ 65697411 (-)
G287043 NA non-coding downstream 55568 65448068 ~ 65448417 (-)
G287041 NA non-coding downstream 57683 65446079 ~ 65446302 (-)
G287005 NA non-coding downstream 164090 65338173 ~ 65339895 (-)
G286979 NA non-coding downstream 199487 65290732 ~ 65304498 (-)
G287067 NA non-coding upstream 18564 65526948 ~ 65532451 (-)
G287081 NA non-coding upstream 46146 65554530 ~ 65554731 (-)
G287083 NA non-coding upstream 48043 65556427 ~ 65556658 (-)
G287097 NA non-coding upstream 59636 65568020 ~ 65568248 (-)
G287110 NA non-coding upstream 70888 65579272 ~ 65579563 (-)
G287042 NA other downstream 56702 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 203568 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 268077 65235180 ~ 65235908 (-)
G286638 NA other downstream 428000 65054700 ~ 65075985 (-)
G286580 marco other downstream 474249 65014259 ~ 65029736 (-)
G287112 NA other upstream 71407 65579791 ~ 65580495 (-)
G288578 NA other upstream 1334287 66842671 ~ 66842881 (-)
G289678 NA other upstream 2118448 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 2375368 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2698206 68206330 ~ 68208674 (-)

Expression


Co-expression Network