hsd3b1 (LOC106586600)


Basic Information

Item Value
gene id hsd3b1
gene name LOC106586600
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65510598 ~ 65512345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597717.2
GCCTGTAGACCTTGCCTCACTTCTCACCCCAGAGTGGCAGTTACCGGCACTTCTAGCACATTCCCTCAGGCTAGAAAAAGGGAGTtttcagagaggggagaggggtgttAAGTTAGTGTCTGCCATGCCCTCGGGATAGCAGAGGAGTTTTAGGACGGGACAAAGTCCGGAGCATTGATCATTCCCAGTGCTTAGGAAAGGGAGTTTTCTGAAAGTGGTAGTAGTTTCAGATTTTGGACTGGGCCATGTCTCTGCAaggtgatgtgtgtgtggtgACAGGAGCCTGTGGGTTCCTGGGAGAGAGGCTGGTACGGCTGCTGCTGGAGGAAGACAAGCTCACAGAGATTCGTATGCTGGACATAAATGTCCGACCACAACTCATACAGTGTCTGGAAGAGATCAGAGGGGACACGCTGGTAAGTGTATTTGAGGGGGACATTAGTGATAGTGAGCTGCTGAGGAGAGCGTGCAAGGGAGCATCGCTGGTCTTCCACACTGCGTCCCTCATTGACGTCACCGGGAAGGTGTTATACAGTGAGCTTCACAGGGTCAACGTCAAAGGAACCCAGCTCCTTCTGGAGACGTGCGTCCAGGAGAATGTGGTGTCCTTCATCTACACCAGCAGCATCGAGGTCGCCGGCCCCAACGCCAACGGAGACCCCATCATCAACGGTGATGAGAACACACCCTACACATGCTCCCTAAAGTTCCCCTACAGCAAGACCAAGAAGGAGGCCGAGCAGGTCACCCTGCAAGCCCAGGGTGAGGTGCTCCAGAATGGGGGCCGGCTGGCCACCTGCGCCCTCCGACCCATGTACATCTATGGAGAGGGCTGCCGTTTCCTGCTGGGCCATATGGGAGACGGGATTCGGAACGGGGATATGTTGTACCGGACCTCCCGCCCGGAGGCCCAGGTGAACCCTGTATACGTGGGGAATGCGGCCCTGGCCCACCTCCAGGCCGCCCGTGCCCTGCGAGACCCCCAGCGGAGAGCCGCCATCGGAGGGAACTTCTACTACATCTCAGATGACACGCCGCCTGTCAGCTACTCTGACTtcaaccatgctgtgttgtcgccGCTGGGCTTCAGCATCCAGGAGAAGCCTATCCTGCCCATCCCAGTCCTCTACCTCCTCTGTTTCCTCATGGAGATGCTGCAGATACTGCTCTGCCCCTTCAAGCGCTTCACACCGCCCATAAACCGGCAGCTCCTCACCATGCTGAACACACCCTTCAGCTTTTCCTATCGGAGGGCTCAGAGGGACATGGGGTACGCTCCACGGTACAGCTGGGAGGAGGCACGCAAGCGGACCATGGATTGGGTGGCTTCCCAGTTacccaaggagagagagagaataaaggttaaataattgcCCCACGATCTGCTAATAACACATAACATATAGCTCACCATCCCCAGTCCAAGTGTCTAATCCTCATTACTGCACTCTGTAAAAGTTGATATTAAAGTTGTGTGAAAAACAA

Function

NR:

description
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase

GO: NA

KEGG:

id description
K00070 HSD3B; 3beta-hydroxy-Delta5-steroid dehydrogenase / steroid Delta-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597717.2 True 1485 mRNA 0.55 3 65510598 65512345

Neighbor

gene id symbol gene type direction distance location
pla1a pla1a coding downstream 2214 65503985 ~ 65508384 (-)
LOC118944602 NA coding downstream 23797 65485884 ~ 65486801 (-)
hcn5 LOC106586566 coding downstream 25813 65480140 ~ 65484785 (-)
ska3 ska3 coding downstream 34088 65472285 ~ 65476510 (-)
LOC110520406 LOC106586596 coding downstream 51598 65437563 ~ 65459000 (-)
LOC110520412 LOC106586598 coding upstream 7869 65520214 ~ 65535280 (-)
LOC110520413 LOC106586602 coding upstream 23469 65535814 ~ 65549415 (-)
trnaa-ugc-4 NA coding upstream 30689 65543034 ~ 65543108 (-)
LOC110504464 NA coding upstream 184233 65696578 ~ 65697411 (-)
LOC110505400 NA coding upstream 197259 65709604 ~ 65710566 (-)
G287043 NA non-coding downstream 62181 65448068 ~ 65448417 (-)
G287041 NA non-coding downstream 64296 65446079 ~ 65446302 (-)
G287005 NA non-coding downstream 170703 65338173 ~ 65339895 (-)
G286979 NA non-coding downstream 206100 65290732 ~ 65304498 (-)
G287067 NA non-coding upstream 14603 65526948 ~ 65532451 (-)
G287081 NA non-coding upstream 42185 65554530 ~ 65554731 (-)
G287083 NA non-coding upstream 44082 65556427 ~ 65556658 (-)
G287097 NA non-coding upstream 55675 65568020 ~ 65568248 (-)
G287110 NA non-coding upstream 66927 65579272 ~ 65579563 (-)
G287042 NA other downstream 63315 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 210181 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 274690 65235180 ~ 65235908 (-)
G286638 NA other downstream 434613 65054700 ~ 65075985 (-)
G286580 marco other downstream 480862 65014259 ~ 65029736 (-)
G287112 NA other upstream 67446 65579791 ~ 65580495 (-)
G288578 NA other upstream 1330326 66842671 ~ 66842881 (-)
G289678 NA other upstream 2114487 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 2371407 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2694245 68206330 ~ 68208674 (-)

Expression


Co-expression Network