LOC110520412 (LOC106586598)


Basic Information

Item Value
gene id LOC110520412
gene name LOC106586598
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65520214 ~ 65535280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597718.2
atgcCGGAAGAAGGCCGTCCGGTTAGGGAGAACCTGTTGAAAATAATCACTTCAAGGAACCTTTCACAGAGGGGCAGCAGGACATCCAGCAAGACACCAACTGAGATGGGgggcagtggagaggagaaggagagtgtgcAGGGGAGGTTTCACAGGAGACTGTCTCGTCTGGGGAGCAGAGGCTCTATTAGAGATCCACCCAGACCTCCACCCCAACCTGTCCAACCCTCAGCCACATCTCCGCCCCTAGCCCcggccccagctccagccccggCCACAGTTGAAAGTCCCACTCCCCCAGCAGCGAAACCTCCAACCCCTACAGCCCCAGCCCCTAAACCCTTGGAGCTTCCCCCGAAACCCACTGATATAAGCCTGAAGCCAAGCCTCCCTCCAAGGCCTCTAACCAGGTGGTTCAGCAGCAATGAGCATGGCACCACAGTCCTACAGGGGTTTGAGTTGTTCCGTGGTGATGAGACTCTGTGTGATGTCATCCTGGTGCCTGGGGACAGCAGTGACACCTTCCCCGTGCACAGAGTCATTATGGCCTCTGCCAGCAACTACTTCAAAGCCATGTTCACTGgGGGTATGAGAGAACAGGATATGAGGGAGATTAAGCTCCATGGGGTGAGTAAAACAGGTCTGAAGAACATCATAGAGTTCATCTACACATCCCGGCTGAGTCTGAGCATGACCAACCTGCAGGACACTCTGGAGGCTGCCAACTTCCTCCAGGTCCTCCCCGTCCTCGGCTTCTGCAACAAGCTGCTCAGCACTGAGATCACCATTGATAACTGTATGGAGGTGGAGCGCATCGCCGGGGACCTGCTCCTGGAGGATGTACAGGCCCACATTGGGAAGTTTGTATGTCAGAACCTGTCAGCATTGCTACAGTCTGGCCACTACCTGCAGCTCTCTCAGCCCAGCCTGGCCAACGCCCTGGCCAGCGACAGCCTCAAGGGCTTCTCTGAGATGGAGCTGTACCGCATCGCCCGCTCCTGGCTGGACCACGACCCCCCCACTCGCCGCTCCGCCGCCTACTCCCTGATGAGCCAGGTCCGCTTCCCCCTCATGACCCCCACTGAGCTGCTCGAGATCTCCCAGGAGGATGAGGGGCACGATGATGGCGGAGCGGCCATGATGCGCTCGGACACGGCCTGCGTCAACCTCCTGCTAGAGGCCAGCAACTACCAGATGATGCCCTTCCTCCAGCCTTCCTTACAGACGGAGCGCACACGCATCCGGTCGGACGCCAAACACCTGCTGGCGCTGGGCGGGGTGATGAAGCAGCAGCTGGTGGTGAGCAGGGAGCTGAGACTGTATGATGAGGAGATCGGCCATTGGAGGGCGCTGAGGCCTATGGAGGTTCCCCGCTACCAGCACGGCGTTGCCCTGCTCGGGGGCTTTCTCTACATCGTAGGCGGCCAGAGCACCTACGACACCAAGGGCAAGACGGCGGTGGACAGCGCCTACCTCTACGACCCGCGCTTCGACCGGTGGTTGCAGGTGGCCTCGCTCAATGAGAAGAGAACCTTCTTCCACCTGAGCACCCTGAAAGGGAAGCTGTATGCTGTTGGGGGCCGGAACGCCTCAGGAGAGATTGACACCATGGAGTGCTACAACCTTAGAAGAAATGAGTGGACATTCGTGTCTCCCATGGTCGACCCCCACTACGGGCATGCTGGGACAGTCCATGGTGACCTGATGTATGTCTCAGGCGGAATCACAGGGGACACGTTCCAGAAGGAGCTGTTGTGTTATGACCCTGAGACTGACGCATGGAGTCGCCGTGCCGACATGATGGAACTGCGTGGCCTACACTGCATGTGCACAGTGGGCGATCGGCTCTATGTGATGGGAGGGAACCACTTCCGGGGCAGCAGCGACTATGATGACGTACTTAACTGTGAATTCTACAGCCCTGAGGTGGACCAGTGGACGGTGGTGGCGGCCATGCCACGAGGCCAGAGTGATGTAGGGGTGGCCGTGCTTCAGGGCCAGATCTACGTGGTTGGGGGCTACTCCTGGAACAGCCGCTGCATGGTGGACATCGTGCAGCGCTACGACCCAGAGAAGGACGAGTGGGACCGGGTGTTCAATGTGCTGGAACCCCTGGGCGGCATCCGGGCCTGCACCATGACTGTGCATCTGCCTGAGGGTGCCGTGGACGACGGCCAGATGCAGGAGTGCCCGCTGGACACTGCCAAGAACTGAAAGCTGAGATCAAGAACATATAGATTTAGCTTCTCTGTGTTTGAGATGCTGGAAAGTGTGACTTTTTTGTGGGAGAAGTGGAAAATGTGCAGTAGAATCTCTCGAATAGGTCCCACAAGGGGTTGGAACTGGTTCAGGAAACACAACAGAAAACCGgaaaataacaaaacatttcaaaGAACAGAATTGGAACCGGGAATGAAAGTGATCCATACTGTTCCGGAACTGAAccgttatttttttaaatgcatggcaaccggttaataacgttattttactttcctggcattttttttttttgtcccacAAAAAAATGCAACAAAGTATCTATGGAAAGCCCTCACTCTGCCGCTCTACACACACGAGTTTGTTATCTAACTAGCTCAAGCTTGTTAGCAAGCTAGCTCAAAGGACAGTCAGTTTCTCCATACAAGCCGCTACTcataggtataattctgtggacctaattcagataatgcatgtcataacaagatgcccagatcttcaagcctcctcctcaaccctctctccccaccagTAAAATATCAGTTGCATCTTCCGTTATAGGCTACATTTCTGTCCATCACGCATGTAAACAACTAGTTTGCCTGTTCTATccacactgattggtgaagtaatttaatgagctaaatgtaaaaaaaaaaaacggttgaTTTCACAGGTTAAAAAAGAAACaggggcactgcattgcagtgctagctgtgccaccagagactctgggttcgagcccaggctctgtcgcagccggccgcaacctggaggtccatggggcgatacacaattggcctagcgtcgtccgcgctagggagggtttggccagtagggatatccttgtcccatcgcgcactagaaactcctgtggcgggccgtgcgcagtgcacgctagccaggtcgccaggtgcacggtgtttcctccgacacattggtgagactggcttccgggttggatgcgcgctgtgttaagaagcagtgcggcttggttgggttgtgttttggaggacccatggctttcgaccttcgtctctcccgagcccgtacgggggttgtagcgatgagacaagatcttAACTACTAACAATTGTATACCACgaaaattggagagaaaaggggg
>XM_036974954.1
TGAGCTCTCGGTTAGCTGTGAGAAACTGACTGTGCTGCTGTTTACCACGCTCTACATAACGGTTCCACTCTGCATCCAGCTGCTGCAGGAAGACATTTAGTGATCTGTAAAGCATTAAACAGATTgctgtatgtttatgtgtgtatgcCGGAAGAAGGCCGTCCGGTTAGGGAGAACCTGTTGAAAATAATCACTTCAAGGAACCTTTCACAGAGGGGCAGCAGGACATCCAGCAAGACACCAACTGAGATGGGttttataaCTGGAATGTGATACCAAATGAgacaacggtgtgctttagggcCATGCAGATGCCTCCGAgcagtcgggtaggctgtttggaatgTTTCTCCGATAGGataattttttaaattataatTATGCCCccacacttctaaaaccaaagttgcgcccctgattTTTGTATATGAATCAATGTGCGAATTCAAAAGACGAGCCACTGTAAACCTTAATGTAAATGGACAAAAATCCAATATATGCACTTTTCAGCACTGAAGATATGAGTTTATGTGAAAAACAATGTCATAGACAGATTAATGTGATAAAGGGTGgagttaatttatactgtagctgAGGATGATACAGCAGCTCTCAGACCCGTCGTTGTGTTCCAggggcagtggagaggagaaggagagtgtgcAGGGGAGGTTTCACAGGAGACTGTCTCGTCTGGGGAGCAGAGGCTCTATTAGAGATCCACCCAGACCTCCACCCCAACCTGTCCAACCCTCAGCCACATCTCCGCCCCTAGCCCcggccccagctccagccccggCCACAGTTGAAAGTCCCACTCCCCCAGCAGCGAAACCTCCAACCCCTACAGCCCCAGCCCCTAAACCCTTGGAGCTTCCCCCGAAACCCACTGATATAAGCCTGAAGCCAAGCCTCCCTCCAAGGCCTCTAACCAGGTGGTTCAGCAGCAATGAGCATGGCACCACAGTCCTACAGGGGTTTGAGTTGTTCCGTGGTGATGAGACTCTGTGTGATGTCATCCTGGTGCCTGGGGACAGCAGTGACACCTTCCCCGTGCACAGAGTCATTATGGCCTCTGCCAGCAACTACTTCAAAGCCATGTTCACTGgGGGTATGAGAGAACAGGATATGAGGGAGATTAAGCTCCATGGGGTGAGTAAAACAGGTCTGAAGAACATCATAGAGTTCATCTACACATCCCGGCTGAGTCTGAGCATGACCAACCTGCAGGACACTCTGGAGGCTGCCAACTTCCTCCAGGTCCTCCCCGTCCTCGGCTTCTGCAACAAGCTGCTCAGCACTGAGATCACCATTGATAACTGTATGGAGGTGGAGCGCATCGCCGGGGACCTGCTCCTGGAGGATGTACAGGCCCACATTGGGAAGTTTGTATGTCAGAACCTGTCAGCATTGCTACAGTCTGGCCACTACCTGCAGCTCTCTCAGCCCAGCCTGGCCAACGCCCTGGCCAGCGACAGCCTCAAGGGCTTCTCTGAGATGGAGCTGTACCGCATCGCCCGCTCCTGGCTGGACCACGACCCCCCCACTCGCCGCTCCGCCGCCTACTCCCTGATGAGCCAGGTCCGCTTCCCCCTCATGACCCCCACTGAGCTGCTCGAGATCTCCCAGGAGGATGAGGGGCACGATGATGGCGGAGCGGCCATGATGCGCTCGGACACGGCCTGCGTCAACCTCCTGCTAGAGGCCAGCAACTACCAGATGATGCCCTTCCTCCAGCCTTCCTTACAGACGGAGCGCACACGCATCCGGTCGGACGCCAAACACCTGCTGGCGCTGGGCGGGGTGATGAAGCAGCAGCTGGTGGTGAGCAGGGAGCTGAGACTGTATGATGAGGAGATCGGCCATTGGAGGGCGCTGAGGCCTATGGAGGTTCCCCGCTACCAGCACGGCGTTGCCCTGCTCGGGGGCTTTCTCTACATCGTAGGCGGCCAGAGCACCTACGACACCAAGGGCAAGACGGCGGTGGACAGCGCCTACCTCTACGACCCGCGCTTCGACCGGTGGTTGCAGGTGGCCTCGCTCAATGAGAAGAGAACCTTCTTCCACCTGAGCACCCTGAAAGGGAAGCTGTATGCTGTTGGGGGCCGGAACGCCTCAGGAGAGATTGACACCATGGAGTGCTACAACCTTAGAAGAAATGAGTGGACATTCGTGTCTCCCATGGTCGACCCCCACTACGGGCATGCTGGGACAGTCCATGGTGACCTGATGTATGTCTCAGGCGGAATCACAGGGGACACGTTCCAGAAGGAGCTGTTGTGTTATGACCCTGAGACTGACGCATGGAGTCGCCGTGCCGACATGATGGAACTGCGTGGCCTACACTGCATGTGCACAGTGGGCGATCGGCTCTATGTGATGGGAGGGAACCACTTCCGGGGCAGCAGCGACTATGATGACGTACTTAACTGTGAATTCTACAGCCCTGAGGTGGACCAGTGGACGGTGGTGGCGGCCATGCCACGAGGCCAGAGTGATGTAGGGGTGGCCGTGCTTCAGGGCCAGATCTACGTGGTTGGGGGCTACTCCTGGAACAGCCGCTGCATGGTGGACATCGTGCAGCGCTACGACCCAGAGAAGGACGAGTGGGACCGGGTGTTCAATGTGCTGGAACCCCTGGGCGGCATCCGGGCCTGCACCATGACTGTGCATCTGCCTGAGGGTGCCGTGGACGACGGCCAGATGCAGGAGTGCCCGCTGGACACTGCCAAGAACTGAAAGCTGAGATCAAGAACATATAGATTTAGCTTCTCTGTGTTTGAGATGCTGGAAAGTGTGACTTTTTTGTGGGAGAAGTGGAAAATGTGCAGTAGAATCTCTCGAAT

Function

NR:

description
kelch-like protein 9 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597718.2 False 3346 mRNA 0.55 9 65520214 65535136
XM_036974954.1 True 2846 mRNA 0.55 9 65521239 65535280

Neighbor

gene id symbol gene type direction distance location
hsd3b1 LOC106586600 coding downstream 7869 65510598 ~ 65512345 (-)
pla1a pla1a coding downstream 11830 65503985 ~ 65508384 (-)
LOC118944602 NA coding downstream 33413 65485884 ~ 65486801 (-)
hcn5 LOC106586566 coding downstream 35429 65480140 ~ 65484785 (-)
ska3 ska3 coding downstream 43704 65472285 ~ 65476510 (-)
LOC110520413 LOC106586602 coding upstream 534 65535814 ~ 65549415 (-)
trnaa-ugc-4 NA coding upstream 7754 65543034 ~ 65543108 (-)
LOC110504464 NA coding upstream 161298 65696578 ~ 65697411 (-)
LOC110505400 NA coding upstream 174324 65709604 ~ 65710566 (-)
LOC110504474 wdr3 coding upstream 234034 65769314 ~ 65777312 (-)
G287043 NA non-coding downstream 71797 65448068 ~ 65448417 (-)
G287041 NA non-coding downstream 73912 65446079 ~ 65446302 (-)
G287005 NA non-coding downstream 180319 65338173 ~ 65339895 (-)
G286979 NA non-coding downstream 215716 65290732 ~ 65304498 (-)
G287081 NA non-coding upstream 19250 65554530 ~ 65554731 (-)
G287083 NA non-coding upstream 21147 65556427 ~ 65556658 (-)
G287097 NA non-coding upstream 32740 65568020 ~ 65568248 (-)
G287110 NA non-coding upstream 43992 65579272 ~ 65579563 (-)
G287206 NA non-coding upstream 123373 65658653 ~ 65658911 (-)
G287042 NA other downstream 72931 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 219797 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 284306 65235180 ~ 65235908 (-)
G286638 NA other downstream 444229 65054700 ~ 65075985 (-)
G286580 marco other downstream 490478 65014259 ~ 65029736 (-)
G287112 NA other upstream 44511 65579791 ~ 65580495 (-)
G288578 NA other upstream 1307391 66842671 ~ 66842881 (-)
G289678 NA other upstream 2091552 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 2348472 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2671310 68206330 ~ 68208674 (-)

Expression


Co-expression Network