wars2 (wars2)


Basic Information

Item Value
gene id wars2
gene name wars2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65583035 ~ 65599863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597724.2
AACGCGCTGTTTGGCCTATGTTAGCCACCGTAGTTTCTTATTCCAAGATGGCGCTCCCGATCAGGGGTAATGTGAAATATCTCCTTCAATTCATTCAAAAGAGTCGTTCTCCAAAAAGACTATTCTGCGCTGGACAATGTGCAGACGGAAAGGAGCCTCCAGGTGGGCGTGTGTTCTCAGGAATCCAGCCCACGGGTGTGCCCCACCTGGGGAACTACCTTGGGGCTCTGGAGAGCTGGGTGTCCCTGCAGAACCAGTACCCCTCAGTGCTCTACAGCATAGTGGACCTGCACGCCATCACCCAGCCCCAGGACCAAGCCCTGCTGCGGGTTAACATACTGGACATGGCTGCCAGCCTGCTGGCCTGTGGCATCAACCCAGAGACATCTATCCTCTTCCAACAGTCACAGGTCTCTGAACACGCTGAACTGTCCTGGATCCTAGGCTGTCTTACCAGTATGCCTCGACTCAGACATCTGCCTCAGTGGAAGATGAAGAGTAAACAGAGGAATGAGGGGAGTGTGGGGCTGTACACTTACCCCGTCCTGCAGGCTGCAGATATTCTCCTCTACAAGTCCACTCACGTCCCAGTAGGAGAAGATCAGGTTCAACATCTGGAGCTGGCTCAGGACCTGGCCCGCATTTTCAACAACACCTACGGAGACTTCTTCCCTGAGCCACGTGCTCTGCTTAGCTCCACGCGGAAGGTGAAATCCCTCCGTGACCCCTCCTCCAAGATGTCCAAATCAGACCCCCAGAAGATGGCCACTGTCAACCTCACCGACTCTCCCGACGACATCGTCCTCAAGATCCGCCGCTCCGTCACAGACTTCACCTCTGAGGTGACATTTGACCCTGAGGTTCGTCCGGGCGTGTCCAACCTGGTGCTGATTCATGCGGCAGTGGCGGGGTGCACAGTAGAGGAGGCAGTAGCGTGGGCCAAGGGGCTGGACACGGGAAAGTACAAACAGCTGGTAGCGGATGCCGTGGTGCAGCGGCTCACACCAATCAAGGAGGAGATTGAGAGGCTGAGGGGGGACAGGGGGCACCTGGAGAGGCTGCTGGCCCACGGAGCCCAGAGGGCCAGGGAGCTGGCTGCACCTGTACTCAAGGAGGTCCGCCACAGAGTAGGCTTCTGctgaggggaaaaggggggatCAAATTGCCTGTTTTCTATGGTTtgtcaattaattaattaaatttaCTTCTGAATAATCCCAAtccagaaagtgtgtgtgtgtgtgtgactgactgtaaGATTGGCTATGGTGCTTGACTATGTGTTGTCATTTATGAGGCTCTGTGCCTTGTTTCATATTGCTGATAAtgcttttttttattatttaaagaATAAATATGTGCAATATA
>XM_021597723.2
TCTTATTCCAAGATGGCGCTCCCGATCAGGGGTAATGTGAAATATCTCCTTCAATTCATTCAAAAGAGTCGTTCTCCAAAAAGACTATTCTGCGCTGGACAATGTGCAGACGGAAAGGTCCCTATGcgagagtgggatggagagaaagagggatgatggagaggggggagacgaAGGAGGTGGTGGGAGCGGCAGGACCGAGGCCTGTTTTAGAGGAGCCTCCAGGTGGGCGTGTGTTCTCAGGAATCCAGCCCACGGGTGTGCCCCACCTGGGGAACTACCTTGGGGCTCTGGAGAGCTGGGTGTCCCTGCAGAACCAGTACCCCTCAGTGCTCTACAGCATAGTGGACCTGCACGCCATCACCCAGCCCCAGGACCAAGCCCTGCTGCGGGTTAACATACTGGACATGGCTGCCAGCCTGCTGGCCTGTGGCATCAACCCAGAGACATCTATCCTCTTCCAACAGTCACAGGTCTCTGAACACGCTGAACTGTCCTGGATCCTAGGCTGTCTTACCAGTATGCCTCGACTCAGACATCTGCCTCAGTGGAAGATGAAGAGTAAACAGAGGAATGAGGGGAGTGTGGGGCTGTACACTTACCCCGTCCTGCAGGCTGCAGATATTCTCCTCTACAAGTCCACTCACGTCCCAGTAGGAGAAGATCAGGTTCAACATCTGGAGCTGGCTCAGGACCTGGCCCGCATTTTCAACAACACCTACGGAGACTTCTTCCCTGAGCCACGTGCTCTGCTTAGCTCCACGCGGAAGGTGAAATCCCTCCGTGACCCCTCCTCCAAGATGTCCAAATCAGACCCCCAGAAGATGGCCACTGTCAACCTCACCGACTCTCCCGACGACATCGTCCTCAAGATCCGCCGCTCCGTCACAGACTTCACCTCTGAGGTGACATTTGACCCTGAGGTTCGTCCGGGCGTGTCCAACCTGGTGCTGATTCATGCGGCAGTGGCGGGGTGCACAGTAGAGGAGGCAGTAGCGTGGGCCAAGGGGCTGGACACGGGAAAGTACAAACAGCTGGTAGCGGATGCCGTGGTGCAGCGGCTCACACCAATCAAGGAGGAGATTGAGAGGCTGAGGGGGGACAGGGGGCACCTGGAGAGGCTGCTGGCCCACGGAGCCCAGAGGGCCAGGGAGCTGGCTGCACCTGTACTCAAGGAGGTCCGCCACAGAGTAGGCTTCTGctgaggggaaaaggggggatCAAATTGCCTGTTTTCTATGGTTtgtcaattaattaattaaatttaCTTCTGAATAATCCCAAtccagaaagtgtgtgtgtgtgtgtgactgactgtaaGATTGGCTATGGTGCTTGACTATGTGTTGTCATTTATGAGGCTCTGTGCCTTGTTTCATATTGCTGATAAtgcttttttttattatttaaagaATAAATATGTGCAATATA

Function

symbol description
wars2 Predicted to enable tryptophan-tRNA ligase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in mitochondrial matrix. Orthologous to human WARS2 (tryptophanyl tRNA synthetase 2, mitochondrial).

NR:

description
tryptophan--tRNA ligase, mitochondrial isoform X1

GO:

id name namespace
GO:0006436 tryptophanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004830 tryptophan-tRNA ligase activity molecular_function

KEGG:

id description
K01867 WARS, trpS; tryptophanyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597724.2 False 1368 mRNA 0.53 6 65583035 65599863
XM_021597723.2 True 1431 mRNA 0.54 7 65583070 65599863

Neighbor

gene id symbol gene type direction distance location
popdc2 popdc2 coding upstream 79244 65491959 ~ 65503791 (+)
LOC110520411 NA coding upstream 91968 65489157 ~ 65491432 (+)
ift88 ift88 coding upstream 196329 65362736 ~ 65386706 (+)
zmym2 LOC106586592 coding upstream 271869 65260200 ~ 65311166 (+)
LOC110520400 NA coding upstream 340388 65241290 ~ 65242647 (+)
LOC110520416 tbx15 coding downstream 14322 65614185 ~ 65637086 (+)
LOC110520417 gdap2 coding downstream 177333 65777196 ~ 65813495 (+)
LOC118964312 LOC106586611 coding downstream 427770 66027633 ~ 66036299 (+)
LOC110504495 LOC106586612 coding downstream 508004 66107867 ~ 66161419 (+)
LOC110520426 LOC106582091 coding downstream 609250 66209113 ~ 66268815 (+)
G287095 NA non-coding upstream 15260 65567475 ~ 65567775 (+)
G287093 NA non-coding upstream 18135 65564669 ~ 65564900 (+)
G287085 NA non-coding upstream 24743 65558078 ~ 65558292 (+)
G286855 NA non-coding upstream 28861 65460996 ~ 65554174 (+)
G286879 NA non-coding upstream 48373 65533602 ~ 65534662 (+)
G287133 NA non-coding downstream 11155 65611018 ~ 65611305 (+)
G287215 NA non-coding downstream 76245 65676108 ~ 65676375 (+)
G287281 NA non-coding downstream 126034 65725897 ~ 65726577 (+)
G287295 NA non-coding downstream 138863 65738726 ~ 65738959 (+)
LOC110520396 LOC100136409 other upstream 416455 65161342 ~ 65166580 (+)
G286679 NA other upstream 473398 65109256 ~ 65109637 (+)
G285763 NA other upstream 1275675 64306512 ~ 64307360 (+)
G285203 NA other upstream 1499053 64071432 ~ 64083982 (+)
G288252 NA other downstream 949959 66549822 ~ 66550487 (+)
G288430 NA other downstream 1131423 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 1183510 66783373 ~ 66787442 (+)
G288674 NA other downstream 1393308 66993171 ~ 66994131 (+)

Expression


Co-expression Network