LOC110504474 (wdr3)


Basic Information

Item Value
gene id LOC110504474
gene name wdr3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65769314 ~ 65777312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504474
ATGCCCAGGGATGGCTCTGACGCGGTGCTGGAGGTGTTCAGTGTGCTGCCAGGACGAGGTGGAGAGGGTGATGGCCAAGAAGCTGAAGAGAGCCAAGAAGAAGGCCAGGGATGTGCAGGGTGCAGAGGAGTAGGAAGCCCCAGAGCCTGTGGTGAAGAGGAAACTGGCTTATGAGATTGTGAGACTGACCAACATCAAGGCCTCTGCCAAGattagATGGGTGGACTGCCTGCTGTTTGCGGGTGGGGAGTTGAAGGTAGCCATGCTGCTCCAGAACAACACAGTGGAGCCTTACAGCCTCAAGACGTCTGATAAGAACCCCACGGGCACTAAGATCTCCAGGCTCGCCCTGGGAGACCAGGGTGCCCGCACATTGGCCTTCAGCTCAGACAACATTGCTGTCCCTTCCGCCTCTCCGGGGACACTGTCAAAGTCTGGAACAGGTCTACCCTGCAGGTGATTCGCACCATGGCGTGTGAGTATGCCCTCTGCTCCCTGTTCGTCCCTGGAGAAATGCAGATGATCCTAGGAACCAAGagTGGTAAGATTCAGATCTTTGACTTGGCATCAGGAACCCTCCTGGAGACTGTCAATGCCCATAACGGAGCTCTGTGGACCATCTGTCCGTCTCCTGATcagGGGATAGTGACGTCAGAGTTTCAGCTGATTAAGGATGGAGAGGCTGCACAGAAgaggCTGACGATGAAACGCATGCGTACACTGCAGCTGGATGAGGATGTGTTGCATGTGTGAAATATTCTCCTGACCAGAGATTGTTGGCTGTCTCCCTGCTGCACTGTACCGTCAAGGtcttctacactgacacactcaagttcttcttctctctgtatgGACACAAGCTCCCTGTGTTCTGCCTGGACATCTCTCATGACAGTGCCATGATAGCAACCGGTTCTGCAGACAGAAACGTCAAGATCTGGGGTCTGGATTTTGGGGACTGTCACCGATCTATGTTTGCCCATGATGACAGCATCATGTACCTTCAGTTTGTTCCCAAAACCATCTGTTCTTCACAGCGGGGAAGGAAAAGAAGATACAACAATAAGATGCAGTCAAGTTTGAGCACATCCAAACTCTAGAGGTGACATTCACTCCCATGCTGTTACATTTCCCATATGGAGAGGAGGCCtcgagttccattattaaaaatgtGTTGAATATTGATGATTGGTTCCTGGAGAGACCAAAAGCAGCAGAAGTGGCGAAGAAGAACATAGAGACAtgtgtatacagtatatgtgtctCTCTTCAGGCTGAGCTTGTCATGAAGGCTCTGGAGCTGTACAGATCAGAGATAAGGAAAATGTAGGAGCATCAGCCTGCCAGTCAGCCGGCAAACAGTTGCCTCCAACTAAAGTCAATCTTATCCTTGTGGCCTTTGGAAACGTTTCTCCGTCTCACTATGTCATGGCACGTGATGAAGAAGGCCCATTCCAGTGAGCCAGAGGTGTCTCTGCTGGTCCTGCCGTTCCCCTACgtcccagacctgctgtctcTCTTCAACAGCTATGTCCAGGATGGCCTGGAGGTCGAGCTAGTGTGCCGCTTCTTTCTGCTCAGGGTCCACTTTGGCCAAATCTCCAGTAACCAGATGCTGCCAACCGTCATAGATGAGCTAAGAAGCAACACCCTCTTTAAAGTCTGAGAGTTCAGGTTTCTCCAGGTGGAGGTCGAGAGCAAAGAGGACATCATGTTCTTTGCCGACGCCGCCTCGatgagaagcgagagagagaagagagctctACTCATCATCGCCTGAATCACTCTCTCTCTAGAGGCTGGTAGGATGACCTATAGGAGGACGGGTTCATTGTAActgctggaatggaattaatggaacggagtcaaacatgtcaTTTCCATATGTTTGTTTGATACTGTTCcgtttattccattccagccatgacaatgagcccgtcctcctcgcACCAGCTTCTTCTGATATCTACCCCACATCATGACTAGTAGGCTACTGCAGGCAAGGCCTTTAGCAGAGATTTACACTGTTTAGTTTTATATTTCAACTGTTATAGGATCCTGATAGGACATAACACTGTTGTTCAATGACATGCTTCATTTCCTAAATAAACTGTGTCTGAG
>TU326009
CATAGTTTATAGGAGATAGATTATCTTATACctcctaaaatcacattcctatcttaacaacaatattttaaacattttTCATACTACATGCACAACGTATTGGATGGAAACTTGACAGATAAAGGGgatatactttccaagttacagtattttgtccatacagtttttaatgacatcacgAAAACGAAAAGCAATATCATTAGTTTTCCATAGCTCCCCACTGACCATTCCCCACGCCACATTATGTTacaaatattgttccagtattcacgTTTGACCGAGTTAGAGTTTGTCGGGAAAAGTCTGTGAAACAGAGATTCCTTTGTTCATACTGGAGGGGAATAAAGAAAGTCTTCTCCTTAAATTTACGACAGGGTGTGGAGGTGTCAAAACCCCCACACCAGATCCCTCCTCCACTCTGCAGGTGAGAGAAGGTCTGTTATTGTCAGCCATTTCCAAGCTGATCTGTCCCATtgtgatcctcacaggacagtcatgacagctgtgagtctccaCGTCAAGTAACTAGACTGCAGAGATGGAGAGGTTGTATGTGTGTAatctgtaatggtgtgtgtgtgtgtatacagtatatgtgtctCTCTTCAGGCTGAGCTTGTCATGAAGGCTCTGGAGCTGTACAGATCAGAGATAAGGAAAATGTAGGAGCATCAGCCTGCCAGTCAGCCGGCAAACAGTTGCCTCCAACTAAAGTCAATCTTATCCTTGTGGCCTTTGGAAACGTTTCTCCGTCTCACTATGTCATGGCACGTGATGAAGAAGGCCCATTCCAGTGAGCCAGAGGTGTCTCTGCTGGTCCTGCCGTTCCCCTACgtcccagacctgctgtctcTCTTCAACAGCTATGTCCAGGATGGCCTGGAGGTCGAGCTAGTGTGCCGCTTCTTTCTGCTCAGGGTCCACTTTGGCCAAATCTCCAGTAACCAGATGCTGCCAACCGTCATAGATGAGCTAAGAAGCAACACCCTCTTTAAAGTCTGAGAGTTCAGGTTTCTCCAGGTGGAGGTCGAGAGCAAAGAGGACATCATGTTCTTTGCCGACGCCGCCTCGatgagaagcgagagagagaagagagctctACTCATCATCGCCTGAATCACTCTCTCTCTAGAGGCTGGTAGGATGACCTATAGGAGGACGGGTTCATTG

Function

symbol description
wdr3 Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human WDR3 (WD repeat domain 3).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504474 False 2121 mRNA 0.46 15 65769314 65777312
TU326009 True 1170 lncRNA 0.46 4 65769601 65771898

Neighbor

gene id symbol gene type direction distance location
LOC110505400 NA coding downstream 58748 65709604 ~ 65710566 (-)
LOC110504464 NA coding downstream 71903 65696578 ~ 65697411 (-)
LOC110520413 LOC106586602 coding downstream 219899 65535814 ~ 65549415 (-)
trnaa-ugc-4 NA coding downstream 226206 65543034 ~ 65543108 (-)
LOC110520412 LOC106586598 coding downstream 234034 65520214 ~ 65535280 (-)
LOC110520418 fam46c coding upstream 44143 65821455 ~ 65840478 (-)
LOC110520419 man1a2 coding upstream 76409 65853721 ~ 65963713 (-)
LOC110520420 trim45 coding upstream 196168 65973480 ~ 65978709 (-)
LOC110520422 vtcn1 coding upstream 201513 65978825 ~ 65984444 (-)
ttf2 ttf2 coding upstream 242721 66020033 ~ 66027601 (-)
G287331 NA non-coding downstream 1109 65767995 ~ 65768205 (-)
G287311 NA non-coding downstream 11497 65757593 ~ 65757817 (-)
G287308 NA non-coding downstream 13282 65755830 ~ 65756032 (-)
G287287 NA non-coding downstream 37278 65731791 ~ 65732036 (-)
G287207 NA non-coding downstream 108886 65660207 ~ 65660428 (-)
G287556 gdap2 non-coding upstream 5599 65782911 ~ 65783661 (-)
G287664 NA non-coding upstream 216461 65993773 ~ 65997590 (-)
G287666 NA non-coding upstream 220656 65997968 ~ 66000189 (-)
G287112 NA other downstream 188819 65579791 ~ 65580495 (-)
G287042 NA other downstream 322031 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 468897 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 533406 65235180 ~ 65235908 (-)
G286638 NA other downstream 693329 65054700 ~ 65075985 (-)
G288578 NA other upstream 1065359 66842671 ~ 66842881 (-)
G289678 NA other upstream 1849520 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 2106440 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2429278 68206330 ~ 68208674 (-)
G290542 NA other upstream 2801791 68579103 ~ 68580707 (-)
G287552 NA non-coding upstream 4667 65776565 ~ 65776792 (-)

Expression


Co-expression Network