LOC110520417 (gdap2)


Basic Information

Item Value
gene id LOC110520417
gene name gdap2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65777196 ~ 65813495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597727.2
ATATAGAAAATGCTCTCGAGGATTTACTTACCGATAGCTGCAATTCTAATAGGTCCTCTGAATGCTGTACTATGCGTTTTACACAAATATTGGGATTTATTGTACATCCCTGGGCATTATTCCGGAAGGGATTGTTATGCGTGTTTGGGTTCTTTGTAGTGAATCAGCTGATCAGGTACTCGCCTAACTATAGTAAACGTGACTGTGCGATGGGAATTGGCTTGATCAAATCAAGTTTTGCCATGTTTGTGATCATAACAAAATCATGAAGACTCCCTGCATTCGATGCTTTTTGTAATTCAGTCCTGCTCGGAGTAGACAACATATTCGTGGACGAAGGAAAACGGTGGGGAGCATTGAGGTGTAGGCCAGCGAAGTGCAGGAATGGATCCTCTGGGAGCACGCTCTCAGTTTGTGGAGGTACAGACTCTGTCCACCTGGGAGCGGCAGCCAGACTCtgagggagaagagacagagaaggagtaTACCGACAGCCTGGTCAGCCAGGAGGCCTTCCCCTCCCCTTTTCCCTACAGAGAGGACATCAACAGGAAGATCGTGCTCTATAATGGCGACGTGGCCCTGCTGAACTGCACAGCGATTGTCAACACGAGTAACGAGACTCTGACGGACAAAAACCCCATCTCTGAGAGCATCCTCTTACACGCTGGGCCTGAGCTTCGAGATGAGCTGCTCAAACTGAACGGATGTCGGACAGGCGAGGCGAAAATGACCAAAGGCTTTAACCTGGCGGCACGCTTTATCATCCACACGGTGGGCCCCAAGTACAAAGCCAAGTACAGGACGGCTGCTGAGAGCTCACTGTACAGCTGCTATAGGAACGTCATGCAGCTCGCCAAAGAGCAGGCCATGGCATCTGTGGCCTTCTGTGTGGTAAGCACAACTAAGAGAGGATACGCACTAGAGGACGCCACACACATCGCCTTCAGAACGGTCCGCAGGTTTCTCGAGAACCATGGAAAGAGCATAGAGATGGTGGTGTTCGCTGTGACGGATACGGAAGAGCCTACATACAGGAAGCTGCTTCCTCTCTACTACCCTCGTTCTGAGGAAGAGGAGCGCGCCAGCCTGCCCCTAATCCCTGCCGACATTGGCAACTCGGAGGGTGAGCCTGTCGTCCCAGAGAGACAGATCCGCATCGCTGAGAAACCAGGCAGTCTGGAAGATGACTGTGAGGAGGAGACTCTGGACTCAGACCTGGGCCAGGTGGGGAATCATGCGTTTGCCCGGATGGAGGGAGATGTGGACAAACAGCGCAAACTCATCCTGCAGGGCCAGCTGTCTGACGCAACCATTCACAAACAGCACCAGAGAAATTATAACCGTTGGTTATGTCGAGCCAGGGCAGAGGACTTGTCTGACATAGCAGCACTGAAAGCCTTATATCAAACTGGTGTTGATATGTGTGGCAGGACGGTGATGGTTCTTGTTGGCAGAAATATTCCTGTGACCCTCATCGACATGGAAAAGGCCCTGCTGTACTTCATCCATGTCATGGACCACATCACAGTGAAGGAGTATGCAATGGTTTACTTCCACACTCTGACCGGAGAACACAACCATCTGGACTCTGAATTCCTTAAGAAGCTCTACGAGATTGTAGATGCCAAGTTTAAGAAGAACTTGAGGGCTTTCTACTTTGTACACCCCTCGTTTCGCTCCAAGGTGTCCACCTGGTTCTTCACAAGATTCACTGTGTCAGGGATGAAAGAGAAAGTCCATCATGTAGAGACCCTCCAGCAGCTCTTCACCTGTATTCTGCCTGAACAGATAGACATCCCCCCCTTCATCCTGGAGTACGACGCACGGGTGAATGGGGCTTACCGCCCCGCCCACTCCTCCAGCCTATGAATGGACCAATCAGAACTCTGACTGAGATCAAAGGCCAAGGACTATTTTAGACTCACTTCATCTACAGTCACATAACTGGCTCCACTTCCTGGTTCTGACCAGCAGGAACTCTGTGGTTTAGCTCCTTTACCAGATTATAAGCCACCCAGGACCTCAGTGGGCCTAGGTGGACTTTTGAGTTGATTTTGCTCTGCCTGGGACCTCACAAGGACAGTATGATGGACGATGACACTCTCTGAGAAGCCTGGATACTAATGAACCTAGGATTGTTTTTTATTAGCAGTGCGATACAATCAGATGACAGACAGACGAATGGGTTTCTCTGTGACGGAGCCTGTGTGAACTCGCCAACCTATCCCAGGACACACTGGTGGCCTGTCTTAAaatcctgcctgtgtgtgtgagaacgcGGAGAGACATCACTCAtgtttcaaatgttttatttttgcaCAACTTCACCAAATGGTAGGTGGAAGGTTGTGTTCACAATCACAAGCTGCTTAATTGTGAAGTTGTTTTTAGGTGTCCCAGAACCTAGTGTCCACACTATCCCTTTCCATCTACTCTGTTTCTTATTTAACGCACACAGTTGAAATCATTTATCAAGTTTATGGAAACTAGAATGTGCCTCACATGAAACACAATGATTCCGTAAACATAATTATACTACATTCAAACCTACTGCTTTTTTCTGAATACCAAATCAACTTTGTGTTAGCCATGCAGTCAGATTCTTCATATGTATGTTAACTTGATTTCTCCTTTGTTATCTACTCTGTTTATATTGTGCTATTATTTCAATGTATACCAGCTTTGCGCTTCTGTCATTGAACGCACACGCTTTCCTGAGACATGTTAGTGAATAAAAGACTGTATTGAGAGCCACACATTGTATAGGCTATACAGTAGTTCATGGTTGACTATCAGCTGAAGTTAATCTTGTTTTAGTGGCCCATAGAGAAAGGATGTAGTCATCTGAGATTTGAGCTGCGTCTCGATACATTCTGTCTCAATACATTCTTTGCCAAGATGTAGAGTTTTTAATTTTCAGGTAAAGATGTGAAAATAAACATTGTGATTTCTGCTGTT

Function

symbol description
gdap2 Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 27. Orthologous to human GDAP2 (ganglioside induced differentiation associated protein 2).

NR:

description
ganglioside-induced differentiation-associated protein 2-like

GO: NA

KEGG:

id description
K24997 GDAP2; ganglioside-induced differentiation-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597727.2 True 2961 mRNA 0.47 14 65777196 65813495

Neighbor

gene id symbol gene type direction distance location
LOC110520416 tbx15 coding upstream 140110 65614185 ~ 65637086 (+)
wars2 wars2 coding upstream 177333 65583035 ~ 65599863 (+)
popdc2 popdc2 coding upstream 273405 65491959 ~ 65503791 (+)
LOC110520411 NA coding upstream 286129 65489157 ~ 65491432 (+)
ift88 ift88 coding upstream 390490 65362736 ~ 65386706 (+)
LOC118964312 LOC106586611 coding downstream 214138 66027633 ~ 66036299 (+)
LOC110504495 LOC106586612 coding downstream 294372 66107867 ~ 66161419 (+)
LOC110520426 LOC106582091 coding downstream 395618 66209113 ~ 66268815 (+)
LOC110520428 NA coding downstream 414904 66228399 ~ 66232190 (+)
LOC110504505 LOC106586617 coding downstream 556562 66370057 ~ 66387340 (+)
G287334 NA non-coding upstream 7635 65769192 ~ 65769561 (+)
G287309 NA non-coding upstream 20659 65756337 ~ 65756537 (+)
G287300 NA non-coding upstream 31850 65745022 ~ 65745346 (+)
G287297 NA non-coding upstream 37188 65739779 ~ 65740008 (+)
G287295 NA non-coding upstream 38237 65738726 ~ 65738959 (+)
G287383 NA non-coding downstream 47030 65860525 ~ 65861536 (+)
G287470 NA non-coding downstream 145691 65959186 ~ 66022656 (+)
G287513 ttf2 non-coding downstream 210948 66024443 ~ 66024967 (+)
G287530 rnf17 non-coding downstream 249638 66063133 ~ 66063367 (+)
zmym2 LOC106586592 other upstream 491640 65260200 ~ 65311166 (+)
LOC110520396 LOC100136409 other upstream 610616 65161342 ~ 65166580 (+)
G286679 NA other upstream 667559 65109256 ~ 65109637 (+)
G285763 NA other upstream 1469836 64306512 ~ 64307360 (+)
G285203 NA other upstream 1693214 64071432 ~ 64083982 (+)
G288252 NA other downstream 736327 66549822 ~ 66550487 (+)
G288430 NA other downstream 917791 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 969878 66783373 ~ 66787442 (+)
G288674 NA other downstream 1179676 66993171 ~ 66994131 (+)

Expression


Co-expression Network