LOC110520428


Basic Information

Item Value
gene id LOC110520428
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66228399 ~ 66232190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472978.2
tttttggggggggggtggggggttgtaTGTGTGTTAGTGAGCACTTGCTTGTTGTGTGTGTACTTCATCTGTATATTTGTGTCGCTTGTAAGCATGTATCACCATTGTAGGACTATGGTGTGGGGCGTGGTGGGACTTAATGCATTATTGATTTACTGAAACGTTTTGCACATGTCGCCCCTCTGGTTCGCCTCACTACTTTCCCTGCTCCACACCAGCATGCCTGCGCCCACCCGCCGGGGACACAGGCAGGCTTTAAATATTTCATAAGCCGGTTTTCATTAATATAATGGGAATTATCCAAGTCACTAAATCTAATTATCAAGTGTGAAGTTCACTCACCCATCCCTTTCCCTCAACCTTACCTTAGCCCAAACACAGAAAAATGTAGGCTCAACCTAATCCTCCACTCTCCACGTCTACCGTCGCTCTTTATTTTCTCAATACCTTTTGATGTCCTTCTAGTCCTCCCTCTCTATTTTCATCCTCTCCTAGTTTCTTCTTGTGCATATATTATAAAGACATTTTGTGATATTTTGGTTAGTTTTGGTCTTCGTTAAGGGTTTTGTTAATCTGTTCGTGCACACAATGTTTTGACGAAGCAAGCCGAAGTTTGATAGCCGAAGTCTACACCCCTTCGTTGGCGATTGGTCAACTGTAGGGGTGGCGCGAGTTTTTTCTCGATTTAGTCCGAAAACTCAGTGTGATTCAACATGGCGAACGACAACTTCAAGCGTTTCTTAGCCAAGGAGGGACAGAAGTAAGCAAGACGGAAAGCAACATGCCAACTTCACCAGAGAATGAGGCACAAACACCAGTGAATGGGGACAGCACCAGGTTTTGTTCTCTGCTCCCCAGCACTGACTGGTCATTAACCCCCAGCCCATCTCCCGCACTGAGCTGCAGTGCAGAATGGAAAACCATCTCTATGAAGGACCTGGGAAACCCTATCCTGAGCCCACCTCCAATACCTACTCCACTGGCTTGCTCCTCACCAATGCcacagagcagcagcagtagtagcaggaaTGTGAGAAGAAGGGAGAAAAGAGCTGCAGACTCAGACACATCACTCGTAAAGGCGTTGCAAAGACCGATCTCAAGATCTGGAGAACGTCATGCATTGAACCACCCAGAGGGCCCTGGCACCTATAGCTGATTTCATGGATGAACTATTGGCAAAACTCTGGTTGGAATTCGATCACCAGCtgcatgaatttgtgcatgactTCAAGAAGACATGGACCGAACGACTGGGACCACAGTGAAATGAACAACTTGTTGTTCAGACATCTCAGGAGTCAGACTCTAGACAATTTTATTCCATAGACACTTGTCTTGTTGTTTGCACTTGTTGTTTGCGTGTCTGTTTTTCACAGACACATTTGTACTATTCTTCAAATAATTCCATTTGTCTGACACTTTAATGATATTTCAATGATGTGTTGTTTACATGTCTGTTCTTAGCAGGCACTGTTGTATTGTGGTTTACTTTCAGAGCCCAGATGCAAGAATAaggtttatttttttgtgtgctgaAAAAGCTCTGTTTCTTCATCTCGATACAAGGTGTTTCAATGCATTCTATTTGATAATCAAGTACTGACAATGTTGAGAAGAGCTATGTGCTGCAGACCTTACAGGCTCTTTTGTGTGGTGTAGTTCAATCTAAATTAACGCACACAGACATCATAAAAATGTGGTTAAAAAATTAATTAACAAGATTAAAACTACATTTTAGTACGAAATACTTTGGTTCACAGTGCACACAAAGAATGTGTGCCTCcaaggggtgtgtgtgagagcaggTCAAACAAAGTCCTATTCTGCATGATTGGCTGGTCATGGGTTGAGTTGTCCTCTCCTAACCATGTCTTTTTGCACACATGCGGAGGGGAGAAGACATCCCTGAGCTTGTTTCTTGTTTCGCTTGCAAGCTGTGTCGCCCTGGCACGGGAGAGTCTGCCTGGCTCTTGAGGATTGTTGTCCCCTGGCCACAACCCACTTCCACTCTCCAGGTTGGTAGTTGCCAGAAGGGAGGGGAGTGTCCCCAAAAGCGGGAGACACTTATCTTGCGTTTCGGTTCATGAGTTTCATCTGTGGAGGACAGGTAGTTGTGGAAGGCTAGACAAGCCTTCAGACTGTCTTTAGCCTTTTCAGGGGTACACTCGATTAGCCGAACAAGAGTCCTCATCCTTGCAGCCATGATGCCGAATGCATTCTCTATGACAACAAGAGTGGCGGTAGTTGTAGGTACGCCCAGGATAATTGAGATGGACACCTGTGAATGAGAGATAATAAGAATATATGTTAGATATAAAATATAGCctatttggttaaaaaaaaagaaaaaaaaatccagaaccATATTCCAAAAGCCTTAATAAAATGGCATTTCTCATACAGATATgcatacatctatacagtaacaaGGGAAATTAGAAACAGAAAAATTGATTCCAACATTCTATTATCAACATATCTGGATAAGGGTGACTCAGTTTCTCATGTAGGGAGAGAGCTGCATCTCCCAGAAAAACATGGACTTGGTGTTGTGGTGCCTAGTAGGACAGCTGGTGGTGGTAAATCAAGAGTCTTCTGCAGCAGTTTGGACCCAAAATAACTATCTTGAAACactcaacccttgctctcttgGCCGTATGTCCCTACATCCGTTTCTGTATCTTTCCTATTATATGTCTTGCTAGGTAAAACAAATCTAGTAGATCCTGGGCAAGAGGAGACGGTGAGGTAATGGAGGTAAAGGGGATGGGTGAGGGTGAAGAGGGGTTAGGCAGAGGGTGAAGTGggatgaggtagaggaggaggatgggtgaGGGGTGAGGAAGAAGGGGATGGGTGAGGTAGAGGTCAATGGTTAAGAGTGGTGAGATAGATGAGGATGGGTGAAGAGAGGTGCGGTAGAGGAGGAGGCAGTGAAGAGGGGTAAAGCCGGGTCCTCTGTGCCTTAAAGCCCCTGGTAACCGGCTTAGCAACAAACAGCTGTGCATTTAATTAGGCCTGTCTggtaccacaaacacacacacacacagtttaccatTTGAAAAATACGTACTCATCAAGGTTTTATTTTTTTGGTGGGGGTAGATCAGATTGAATATTGCagattgatggaagccacaatgtaattatctgcataatttccaatcccccaaaaatatatttttgtaaataaacagtaccagtcagaattttggacacatctactcattcaagggtttttc

Function

NR:

description
PREDICTED: putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472978.2 True 3245 mRNA 0.44 3 66228399 66232190

Neighbor

gene id symbol gene type direction distance location
LOC110504495 LOC106586612 coding upstream 66980 66107867 ~ 66161419 (+)
LOC118964312 LOC106586611 coding upstream 192100 66027633 ~ 66036299 (+)
LOC110520417 gdap2 coding upstream 414904 65777196 ~ 65813495 (+)
LOC110520416 tbx15 coding upstream 591313 65614185 ~ 65637086 (+)
wars2 wars2 coding upstream 628536 65583035 ~ 65599863 (+)
LOC110504505 LOC106586617 coding downstream 137867 66370057 ~ 66387340 (+)
LOC110520430 mspd2 coding downstream 180263 66412453 ~ 66434626 (+)
LOC110520432 LOC106586618 coding downstream 244847 66477037 ~ 66489419 (+)
LOC118964315 LOC106605670 coding downstream 322364 66554554 ~ 66555551 (+)
LOC110520433 LOC106586620 coding downstream 330598 66562788 ~ 66630141 (+)
G287546 NA non-coding upstream 137419 66090647 ~ 66090980 (+)
G287543 NA non-coding upstream 141816 66086357 ~ 66086583 (+)
G287534 NA non-coding upstream 158756 66069328 ~ 66069643 (+)
G287531 NA non-coding upstream 164268 66063824 ~ 66064131 (+)
G287530 rnf17 non-coding upstream 165032 66063133 ~ 66063367 (+)
G287817 NA non-coding downstream 3905 66236095 ~ 66243001 (+)
G287818 NA non-coding downstream 5444 66237634 ~ 66244230 (+)
G287831 NA non-coding downstream 29514 66261704 ~ 66262108 (+)
G287834 NA non-coding downstream 40949 66273139 ~ 66273431 (+)
G287835 NA non-coding downstream 41297 66273487 ~ 66273723 (+)
zmym2 LOC106586592 other upstream 942843 65260200 ~ 65311166 (+)
LOC110520396 LOC100136409 other upstream 1061819 65161342 ~ 65166580 (+)
G286679 NA other upstream 1118762 65109256 ~ 65109637 (+)
G285763 NA other upstream 1921039 64306512 ~ 64307360 (+)
G288252 NA other downstream 317632 66549822 ~ 66550487 (+)
G288430 NA other downstream 499096 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 551183 66783373 ~ 66787442 (+)
G288674 NA other downstream 760981 66993171 ~ 66994131 (+)
LOC110520448 LOC106586634 other downstream 1165767 67397151 ~ 67409646 (+)

Expression


Co-expression Network