LOC110504505 (LOC106586617)


Basic Information

Item Value
gene id LOC110504505
gene name LOC106586617
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66370057 ~ 66387340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583262.2
TGAAATAGTTTTTTAAAGGCCATCTTAGTCATTTAAATTACATATTGAAAACCACGTCCTCCAGTTGTTAATGGTGCGCTTGCGTGCAAATGAACCGGGAGCTGTCTAAGTGCTGAATCTAAAGACACGTCCACTCGTCTCCCATTCCAGCAGCGGACGGTCTTCAACCCAAGGAAATATTCTTCTTCAACACCACTATACTTTAGAGACCATAGTATACTTTAGAGACCATCTGTTTTCACTGAGTTTTTGAATGAAAGTGAGAACGCCTTCCTGAAGGCTCTATATTCCGCGTCTTGTGGATATTTCTCACCTCACAACGTCTTTTCCACAGGTTATTTTTAGGTGGCAATGACTCAGAATTGATGATTCTTTACACATTATCAACAACAATACCGCACCTGGGAATCAGTGTTTTTTCAAACTAAGCTATGATCCTACGGACTGGAATGCCTTATGTGTATTCTCTGTGTTTCACGAGAACACCCAATTGCGCTTTGGTCAGAAAGAAATCGATATTGCTGCTTGGATTGTGTGTTTGACCAACATTCATATATGGAAGAAATAAAGAAGTGAAGAAATCTAAAATCAAAAGGAATGAATCGCCCctttgtcaacgtcttgactgcTTTATTTGCATGTTTAATGGAGACCAACAACAGCAGGGTGGTGGATGCCAAGGAGCATGAGTCCAGATCAGGCTCTACTACTAACTTGTCTCCCTCAGACTTTCTGGACTCATTAATGGGTAGAACATCTGGTTATGATGCACGAATACGACCAAACTTCAAAGGTCCCCCAGTTAATGTTACCTGCAACATATTTATCAACAGCTTTGGTTCTATAGCAGAAACTACAATGGATTACAGAGTGAACATCTTCCTGCGACAGAAGTGGAGAGACCCTCGGTTGGCATACAGCAAATACCCAGACTCGTCTCTTGACCTGGACCCGTCCATGTTGGATTCTATTTGGAAACCTGATCTGTTCTTCGCCAACGAGAAAGGCGCCAACTTTCATGATGTCACCACAGACAACAAGCTCCTGAGGGTCTTCAAAGATGGGACCGTCCTGTACAGTATCAGGTTGACTCTCATTCTATCTTGTCCGATGGATCTGAAGAACTTTCCCATGGACATGCAGATCTGTACCATGCAACTGGAGAGCTTTGGCTACACCATGAATGATTTGATCTTTGAGTGGGAGAGCAAGGACAAAAATCCTGTACAGGTGGCCGCTGGGTTGACCCTCCCCCAGTTCATCATGAGAGATGAGAAGGAGCTTGGCTACTGTACCAAAAGCTACAACACCGGTAAATTCACCTGCATTGAGGTGAAGTTCCACTTGGAGAGACAGATGGGTTACTACCTGATCCAGATGTACATCCCCAGCCTCCTCATCGTCATCCTGTCCTGGGTCTCCTTCTGGATCAACATGGACGCCGCTCCCGCCAGGGTGGCACTGGGCATCACCACCGTGCTCACCATGACAACCCAGAGCTCCGGCTCCCGAGCCTCCCTTCCTAAGGTCTCCTATGTGAAGGCCATTGATATCTGGATGGCCGTGTGTCTTCTGTTTGTATTTGCTGCCCTACTGGAATACGCTGGGGTTAACTTTGTCTCCAGGCAACAGAAAGAGTTCCTTCGCTTGAGGCGAAGACAGAGGCGGACTCACAGGGATGACGACATGAGGGATGGCTTCAATTACTCGGGTTACGGCATGACTCATTGTCTGAAGGATGGGTCGGCTGTTAAAAACGCTGTCCCAAACCCCGGCCCAGCACCACCTACCTCTAAAGAAAAAGAGGTGATAAGGAAGAGGTTTGTGGACAGGGCCAAGAGGATTGACACTGTGTCCCGAGCAGCCTTCCCTATGgccttcctcctcttcaacaTCTTCTATTGGATAACATACAAGGTCATCAGGCATGAGGACATTGGCATGCAGTCAGGGTAGTCGCTCTGCCCTGCAGGTTTTACCTATGgaactctcagctctctctctttctctatcattTCTCTAAATGAGAAACGCTAGGACAGCACAGTGAGACTAATGTATCTTATGGGACTATACATGGAGGAGAGGCACAGGGAtgttgatggtgttggtgttctTTCAGGGAAAATATATAGGTGTTCATGCAAAATCTAAAAGACTAATGCACATGTTTAGGATTAACAATTGAACAATTGGTGAGTAACAGATGTATGTTTTCGATGTGTTCCTGTGAGCTAACGCATCCTGGAGATTCTAATGGGTTTTTACTCAAGGCACAGAACAATGATATGAAAAGGTGGACCAAATTTTATGAGACAATTCTGACTTTGCATTTGTACAACCTTGCAATGGAGCAACATTCCATGGATTTGTATGTGCAGTAGTCTGGGCCTTGTAGTTAAGGTGTGgtgaaaaaaaaagtttaataaaAAGGTTGATTAGAGCAGTTTTATACAATTGTACTGCAGTTCCTCACTGTGTCTACAAGCAGCAATTATTGTGTTTATTAGGCAgcgaacacaatacacacacacacacacacacacacacacacacacacacacacacacacacacaccatataagGCCTACATCTGTTAATATTACAGATGCATTTTCCAGGTCGATTTGGTTTTACAGTTGGAGTGTAAGTTTTGTAAATTTAACTGTAATGAAATGTTTATTGTAATGAAGGCAGATGACATGTTTCTAAAACAGAGATTTCTACTTCTAAAGATTCCTCTGAGGACTGTTGAATGCATCCCCTCACTTCCACACTGCAGTGCCCTCTTTGGGCAGTACGTATTACAGTTGACATTGTATACTATACAGTATTGCAACTATGAAGTAGATCTTTATActagggccctgtgttttggtaaatcatgtcacatgacctagatttgaacctttatttaaagcTTTTTCAACAAACGGTCCCCTTTTCGTTATATGTCAGATGGTCCAGCACATTCTTTAGACAATTGCTTTCATTTTTTTGTGAAATTCAAATTTCTGGAAAAGGCTTAAAGATGCattatgcagaaatcactctgccatttcctggttccAAAATTATTAATTGTTTGCCTAATTTCCTATTAAGTGacaaacaagcaagtatagtgtagagaatcattgtaccatctatactgctttgaaatatattttacataactaaaaatattgtattttcagctgtttgaagccgaaagtaaaagacaaaaaaaaaatcaactttaaaacgggaagcatagaaatagcgtacATAGACCATATCTACCGCTTCAATGAATATGACAGAtgtataactcacatttctatgtgaagtTTGTCAGGTCGCCCCAAAACATATTGCatctttaaaataaaatattaaaatctAGGTCATGTGACATTATAGCCAAAAACACAGAGCCCTTCTCATAACACATAATAGTATAGAGCAGTTATTGGTCCTTGCACTTCTGACATAATATGAGGAAAGTTTTTTGTTGAATGGTGTTTCTGAAAAAGGTTGTTTACTAAACTGTACATCAATAAAGTTGAGTGTGCACCACACATATGCTCTCCCTCATCATAGTCGTGTGTTACTGTATTGTCCCATCTTCAAACAGGTTGTCATATCTTTAGATGATGTGTACTGTCTGTTTGGAACTAGCTGACCACATTTTAGAAGAATAATTATGATGCAGACTACAGAGTTGAATATTTCTAGAGGGATGGCAACAAGGAATCAATACTGATGAATAATGATTACAGACAAACCAAGAGCAGACATTACTATATTAACTTGGGAATAGAGAAGGTTAGAGGAGAGAAAAATCAACAACTGTCCTTTCTACTTACCTGGCCAATGACTCAGGGTGACTGCTGAAGCCTGGCtgggctctctctcactctttctctctctctccaggtcgcTCCGTGTGACACAGACCCGGGGCGACAGCGGGCTTCCGTTAATGTGGGATAATGGGCCTCACGGTGCGTTGGCGAGACATCACAGCAGGTGACATTTACCTATGTGGACTACAGCTGAATAAAAAACGCTAGGGTGGCTTCAACGACACTGCAGGACAATTCTATTAGACACACACCCGGGGATAAGTGGTAGAACATATTAAATGGTCTCCACTCAGTGCAATTGTCTCTGAAGTTGTTTAATGTGAGAGCCATGCAAATTACTGCTGCCCAGAAAGGCATCATGTTATGCCCCGACACCAAATTACCATGTGAATTATTTGAATTAGACAGAAAATATAATATtgctctactgtatataggacTTACCTTTTCCACTAGTCAATTCACTGAACCTTATTATTATTAAGCTGGAAATGAATGAGAGAGatcaatatatatatagatagatcaATATTGAGCCATATCCAAGAAAATGTGTAATGTTGGGGATTAAAGAGATTTTTCTGTACTTTTGTGTACTTtctagccagtagttctgaaagtagcgctcatgagccaaaagtggtctgtctcgctctgctgtgtgtgcatcttgctagctgtcactcaaaaggcgaggggctgaagctcattggctaaaACTCTAATTGCTAGGTGCTGGTCCACGTGGGGGGAAA

Function

NR:

description
PREDICTED: glycine receptor subunit alpha-2-like

GO: NA

KEGG:

id description
K05194 GLRA2; glycine receptor alpha-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583262.2 True 4604 mRNA 0.42 9 66370057 66387340

Neighbor

gene id symbol gene type direction distance location
LOC110520426 LOC106582091 coding upstream 101242 66209113 ~ 66268815 (+)
LOC110520428 NA coding upstream 137867 66228399 ~ 66232190 (+)
LOC110504495 LOC106586612 coding upstream 208638 66107867 ~ 66161419 (+)
LOC118964312 LOC106586611 coding upstream 333758 66027633 ~ 66036299 (+)
LOC110520417 gdap2 coding upstream 556562 65777196 ~ 65813495 (+)
LOC110520430 mspd2 coding downstream 25113 66412453 ~ 66434626 (+)
LOC110520432 LOC106586618 coding downstream 89697 66477037 ~ 66489419 (+)
LOC118964315 LOC106605670 coding downstream 167214 66554554 ~ 66555551 (+)
LOC110520433 LOC106586620 coding downstream 175448 66562788 ~ 66630141 (+)
LOC110505407 LOC106586622 coding downstream 396069 66783373 ~ 66787442 (+)
G288023 NA non-coding upstream 2551 66367287 ~ 66367506 (+)
G288019 NA non-coding upstream 10384 66359395 ~ 66359673 (+)
G288014 NA non-coding upstream 19632 66349557 ~ 66350425 (+)
G287998 NA non-coding upstream 39991 66329774 ~ 66330066 (+)
G287968 NA non-coding upstream 69497 66300170 ~ 66300560 (+)
G288042 NA non-coding downstream 10552 66397892 ~ 66398127 (+)
G288076 NA non-coding downstream 100915 66488255 ~ 66488858 (+)
G288254 NA non-coding downstream 169077 66556417 ~ 66556859 (+)
G288341 NA non-coding downstream 246018 66633358 ~ 66633567 (+)
G288372 NA non-coding downstream 271016 66658356 ~ 66663722 (+)
zmym2 LOC106586592 other upstream 1084501 65260200 ~ 65311166 (+)
LOC110520396 LOC100136409 other upstream 1203477 65161342 ~ 65166580 (+)
G286679 NA other upstream 1260420 65109256 ~ 65109637 (+)
G285763 NA other upstream 2062697 64306512 ~ 64307360 (+)
G288252 NA other downstream 162482 66549822 ~ 66550487 (+)
G288430 NA other downstream 343946 66731286 ~ 66733797 (+)
G288674 NA other downstream 605831 66993171 ~ 66994131 (+)
LOC110520448 LOC106586634 other downstream 1010617 67397151 ~ 67409646 (+)

Expression


Co-expression Network