LOC110520430 (mspd2)


Basic Information

Item Value
gene id LOC110520430
gene name mspd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66412453 ~ 66434626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597745.2
CATTGTGGGTTAGCCAGTATTGTCTCCGGCAACAGACAAATGTACAATACATATTGTTGTTATCAATGCTTACGTTGATAAATATCTAAATAATCCATTAAATATTCTTTACATTTGATTGAATGGACCTGAGATGTCTTATTTTTTAGGTATCACTTTGATGATCTAGCCAAGAGCTAAAATGGCAATACAAGGGCAACAGTTTCATACGCTAGAACTGATTTATTCCTCAACTTCAATGTACCCATTCTAGCCAGAACAGCAGAGTCACTTGAACATGGCGGAAGTTGGGAAGTTTGAACCAGAGCAGGACATTGAGAAGAAGATTGAGGAGACGAGACAGAAGTTCAACAATGAGTATGTCCAAGGACAAGAATCTGACAAATATGACTCCAGAGATGTGGACAGGCTACAAAAGGATGATGCTCTGGTGGAGGCATACCTGACATGGCGACTATTCTCTGTGGACGATGCCCTGAAGATGATTGATGACAGTTTTATGTGGAGGAAAGAATTTAGTTTGAATGACCTCACTGAGAGCAGCATTCCAAAGTGGATGTTTGAGACGGGGGCTGTCTTCCTCCACGGCTACGACAAGGAAGGCAACAAGCTCTTCTGGTTCAAAGTCAAGCTACATACCAAGGATGCAAAGACCAGCATGGACAAGAAGAAGTATGTGGCCTTCTGGCTGGAGCGCTATGCTAAGAGAGAGCCAGGGATGCCACTCACTGTTGTGTTTGACATGGCCGATTCAGGGATCAGCAATATCGACATGGATTTTGTGAAGTATGTAATTAATTGCTTCAAAGTGTATTATCCAAAGTTTCTATCCAAAATGATCATTGTCGACATGCCATGGATCTTGAATGctGCATGGAAGATTGTGAGGACATGGTTGGGTCCAGAAGCCATCAGCAAGCTCAAGTTTGCATCTAAAAATGAGATCCAAACATTTATTGGCCCTGAATACCTGCCTCCTCACATGGGTGGAACGGATCCCTTCAGATACAGCTATCCTCCCCTTCCTGACGATGACTTCCAAACGCCAGTATGTGAGAACGGACCAATCGTCAGCGAGGACGACAACGAGAGCAAGGACTTCGAATCAGACAGCAAGGAGTTAGAGTCGAGCTTCAGCTCCGAGGTCGCCATCGGGCCCAAAAAGGTGTATTTCTCAGAGGAGAGCCTGAGCAGTCTGAAACTGGACGACAACGACAAAGGAGACAGCCGGCCGAAGGGAGCCAGGAAGCCACTGACCACATTCAAGGCCCCTCTGCTACACGTCAGTCCAGCAGAGGAGCTGAGCTTTGGGTCCAAAGAGTCAGACAGGAAGTGTCTTATCATCCTCGATAATGTGTCCAAGAATCAAGTGGCCTTCAAGGTACGAACCACAGCACCTGAGAAGTACAGAGTGAAGCCCAGCAACAGCTGCTGTAATTCGGGCGCTTCTGTGGATATAGTGGTGTCCTTACATGGAGGCTACCAGGCATCTCTGCAGGACCGCTTCCTAGTTATGGCTGCAGAGATGGAGCAGAACGCTGGTGCTGGATCACCAGAGCTCGCTCACTTCTGGAAGGACGTGCCCAAAACCAAGATCATGGAGCACAGGAGTACCAAGATGGCTGCGCAGTGGCTTCAATACAGCGCCCACGGTCAGTcatccagggtttatacacatcattggACGTGACTGTGTCCTGTCCTTCCTGTAGATTACGATGTCACATCCTGGAGAGCACTAAGCCCATCCTGACCTGTGGAAGTGACAGCCCAATTGAAGGAGGAGCCAATGGCCACCCGGACCTGCACACG
>XM_021597741.2
CATTGTGGGTTAGCCAGTATTGTCTCCGGCAACAGACAAATGTACAATACATATTGTTGTTATCAATGCTTACGTTGATAAATATCTAAATAATCCATTAAATATTCTTTACATTTGATTGAATGGACCTGAGATGTCTTATTTTTTAGGTATCACTTTGATGATCTAGCCAAGAGCTAAAATGGCAATACAAGGGCAACAGTTTCATACGCTAGAACTGATTTATTCCTCAACTTCAATGTACCCATTCTAGCCAGAACAGCAGAGTCACTTGAACATGGCGGAAGTTGGGAAGTTTGAACCAGAGCAGGACATTGAGAAGAAGATTGAGGAGACGAGACAGAAGTTCAACAATGAGTATGTCCAAGGACAAGAATCTGACAAATATGACTCCAGAGATGTGGACAGGCTACAAAAGGATGATGCTCTGGTGGAGGCATACCTGACATGGCGACTATTCTCTGTGGACGATGCCCTGAAGATGATTGATGACAGTTTTATGTGGAGGAAAGAATTTAGTTTGAATGACCTCACTGAGAGCAGCATTCCAAAGTGGATGTTTGAGACGGGGGCTGTCTTCCTCCACGGCTACGACAAGGAAGGCAACAAGCTCTTCTGGTTCAAAGTCAAGCTACATACCAAGGATGCAAAGACCAGCATGGACAAGAAGAAGTATGTGGCCTTCTGGCTGGAGCGCTATGCTAAGAGAGAGCCAGGGATGCCACTCACTGTTGTGTTTGACATGGCCGATTCAGGGATCAGCAATATCGACATGGATTTTGTGAAGTATGTAATTAATTGCTTCAAAGTGTATTATCCAAAGTTTCTATCCAAAATGATCATTGTCGACATGCCATGGATCTTGAATGctGCATGGAAGATTGTGAGGACATGGTTGGGTCCAGAAGCCATCAGCAAGCTCAAGTTTGCATCTAAAAATGAGATCCAAACATTTATTGGCCCTGAATACCTGCCTCCTCACATGGGTGGAACGGATCCCTTCAGATACAGCTATCCTCCCCTTCCTGACGATGACTTCCAAACGCCAGTATGTGAGAACGGACCAATCGTCAGCGAGGACGACAACGAGAGCAAGGACTTCGAATCAGACAGCAAGGAGTTAGAGTCGAGCTTCAGCTCCGAGGTCGCCATCGGGCCCAAAAAGGTGTATTTCTCAGAGGAGAGCCTGAGCAGTCTGAAACTGGACGACAACGACAAAGGAGACAGCCGGCCGAAGGGAGCCAGGAAGCCACTGACCACATTCAAGGCCCCTCTGCTACACGTCAGTCCAGCAGAGGAGCTGAGCTTTGGGTCCAAAGAGTCAGACAGGAAGTGTCTTATCATCCTCGATAATGTGTCCAAGAATCAAGTGGCCTTCAAGGTACGAACCACAGCACCTGAGAAGTACAGAGTGAAGCCCAGCAACAGCTGCTGTAATTCGGGCGCTTCTGTGGATATAGTGGTGTCCTTACATGGAGGCTACCAGGCATCTCTGCAGGACCGCTTCCTAGTTATGGCTGCAGAGATGGAGCAGAACGCTGGTGCTGGATCACCAGAGCTCGCTCACTTCTGGAAGGACGTGCCCAAAACCAAGATCATGGAGCACAGATTACGATGTCACATCCTGGAGAGCACTAAGCCCATCCTGACCTGTGGAAGTGACAGCCCAATTGAAGGAGGAGCCAATGGCCACCCGGACCTGCACACGACGCTGATGCGTGTGATGGTGTGTAACGCCCGGCTGGAGCAGAAGCTGGACAAGTATCTGTGGGTCCAGCAGGTTCTGATTGGTCTGGTGCTTGTTGTCATGATGTTCACCTTCCTGTGTCTCTACAACCTTCCTGGGACTTCCTGACCTGACAACAtggtctacctcctcctcccatctaACATAGAGACTACAGCAGCTGAAAGCTTAACCAACAGAGGGCTGGTGTTGGACTCAGTGATAATACGAGAGTAGGCTCTCTTCTCTACAAGAGCTGTCGTCATGGAGATGGAGGGCTGCTCTGTTCCGTAGCAGTGAACTTGTGGAGTTGCCCAGAGAGATTCCTCATAGTTTCCTGGGTGTTGTGAGAGGTACTGTACCTTAAGAGTCTCGACACTGTGAAATGGAATCAATAATGTATTTTTACTACTGATCATggaattatacagtgccttcagaaagtattcataccccttgacttattccacatgtttttGTGTTACAtcctaaattcaaaatggattaaaacatacatcattctcacccatctacacacaatagcccataatggcaaagtgaaaacatggttttagaattttttgcacatttattgtaAATTAAATACAGCAATATataatttacgtaagtattcacacccctgagtcaatacttttagATGCAtttttggcagctattacagctgtgagtctttctgggtaagcctcGAGCTTTCCATACCTGGATTTTGCAACATTTGCTCATTTATTATTTTAAATATCCTTTAAGCAATGTCaacttggttgttgatcattgctagacaaccattttcagttcTTGACATACATTTTGAAGTAGATTTAAGTAATTACTGGAACAACTCAGGAaccttcactgtcttcttggtaagcaactctagtgtagatatggccttttgttttaggttattttcctgctgaaaggtgaattcatatcccagtgtctggtggaaaccaGACTGAACCAAGATTTCTTCTAGGATATTACCTGTGGTTAGCTCtattacgtttattttttatcctgaaactcCCCGGCCCTAACGATTACAAGCGTACCCGTAACATGAAGcagtcaccactatgcttgaaaatatagagagtggtactcagtaatgtgttgtattggatttgccccaaaccaaacactttgtattcaggacaaaaagttaattgctttacCACATTcttttcagta

Function

NR:

description
motile sperm domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597745.2 False 1812 mRNA 0.48 14 66412453 66433149
XM_021597741.2 True 2938 mRNA 0.44 15 66412453 66434626

Neighbor

gene id symbol gene type direction distance location
LOC110504505 LOC106586617 coding upstream 25113 66370057 ~ 66387340 (+)
LOC110520426 LOC106582091 coding upstream 143638 66209113 ~ 66268815 (+)
LOC110520428 NA coding upstream 180263 66228399 ~ 66232190 (+)
LOC110504495 LOC106586612 coding upstream 251034 66107867 ~ 66161419 (+)
LOC118964312 LOC106586611 coding upstream 376154 66027633 ~ 66036299 (+)
LOC110520432 LOC106586618 coding downstream 42411 66477037 ~ 66489419 (+)
LOC118964315 LOC106605670 coding downstream 119928 66554554 ~ 66555551 (+)
LOC110520433 LOC106586620 coding downstream 128162 66562788 ~ 66630141 (+)
LOC110505407 LOC106586622 coding downstream 348783 66783373 ~ 66787442 (+)
LOC110520434 LOC106586623 coding downstream 365969 66800595 ~ 66809696 (+)
G288042 NA non-coding upstream 14326 66397892 ~ 66398127 (+)
G288023 NA non-coding upstream 44947 66367287 ~ 66367506 (+)
G288019 NA non-coding upstream 52780 66359395 ~ 66359673 (+)
G288014 NA non-coding upstream 62028 66349557 ~ 66350425 (+)
G287998 NA non-coding upstream 82387 66329774 ~ 66330066 (+)
G288076 NA non-coding downstream 53629 66488255 ~ 66488858 (+)
G288254 NA non-coding downstream 121791 66556417 ~ 66556859 (+)
G288341 NA non-coding downstream 198732 66633358 ~ 66633567 (+)
G288372 NA non-coding downstream 223730 66658356 ~ 66663722 (+)
G288385 NA non-coding downstream 235364 66669990 ~ 66670440 (+)
zmym2 LOC106586592 other upstream 1126897 65260200 ~ 65311166 (+)
LOC110520396 LOC100136409 other upstream 1245873 65161342 ~ 65166580 (+)
G286679 NA other upstream 1302816 65109256 ~ 65109637 (+)
G285763 NA other upstream 2105093 64306512 ~ 64307360 (+)
G288252 NA other downstream 115196 66549822 ~ 66550487 (+)
G288430 NA other downstream 296660 66731286 ~ 66733797 (+)
G288674 NA other downstream 558545 66993171 ~ 66994131 (+)
LOC110520448 LOC106586634 other downstream 963331 67397151 ~ 67409646 (+)

Expression


Co-expression Network