LOC118944607 (LOC106582097)


Basic Information

Item Value
gene id LOC118944607
gene name LOC106582097
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66472339 ~ 66475059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964598.1
ATGACATCACAGGCTCTGAGTTGGGGCCTGATGCCAAAAACACCCCAAAAACAGTTCAGGAACAGACGGGTACAGATACATTTTGACACCAGCGACAGGTGACAGTCCAGTTGCTGATGTTACAAAACCGAGGGTGCAGCCAGACTACTAGACTGCTGTCTGAATTGAGGAACTCTATAGGTAACAATGAGACAGGCCACAGGACACAGCAGTGACAACCAGAGGAAGAATGCAACTCAGGCTGGATCTGTTGTGTTTCTCTCCAACCCTTTGATGAGTGATATTGAGTCAGATTGGTCCCCCATTCATGATGCAGCCTACAATGGACGTGTTCTCACACTGAGAAACCTAATAGCTCAGGGAACGTGTGTCAACCTGGTCACTCTAGAAAGAGTCTCTCCCCTTCATGGAGCCTGTCTGCAGGGACACACTGCCTGTGCCAAGTTACAGATAGAAAATGGGGCAAATGTGAGTAAGGAATTCCACTCTATCTGCACCCTCTCTGGCTGATTTTAAGACTCACACAACACAGGGTTGTATACATGTTTATTGACATGAGTTTGATTGAATTTAATCacacaagcgccatgctctaccaactgagctacaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964598.1 True 610 mRNA 0.47 3 66472339 66475059

Neighbor

gene id symbol gene type direction distance location
LOC118964314 NA coding downstream 59966 66400067 ~ 66412373 (-)
LOC110520429 LOC106586615 coding downstream 176452 66268185 ~ 66295887 (-)
LOC110520425 LOC106582038 coding downstream 278852 66183116 ~ 66193487 (-)
rnf17 rnf17 coding downstream 402205 66036342 ~ 66070134 (-)
ttf2 ttf2 coding downstream 444738 66020033 ~ 66027601 (-)
LOC110520431 LOC106586619 coding upstream 15409 66490468 ~ 66537895 (-)
LOC110504514 NA coding upstream 257178 66732237 ~ 66747293 (-)
rpe rpe coding upstream 545395 67020454 ~ 67023408 (-)
LOC110520437 LOC106586625 coding upstream 591298 67066357 ~ 67078648 (-)
LOC110520442 LOC106586628 coding upstream 749802 67224861 ~ 67236245 (-)
G288172 mospd2 non-coding downstream 51409 66418818 ~ 66420930 (-)
G288116 NA non-coding downstream 136423 66335701 ~ 66335916 (-)
G287993 NA non-coding downstream 149743 66322367 ~ 66322596 (-)
G287992 NA non-coding downstream 150147 66321993 ~ 66322192 (-)
G287976 NA non-coding downstream 163029 66309078 ~ 66309310 (-)
G288230 NA non-coding upstream 52626 66527685 ~ 66532169 (-)
G288284 NA non-coding upstream 69608 66544667 ~ 66544890 (-)
G288286 NA non-coding upstream 74642 66549701 ~ 66550419 (-)
G288287 NA non-coding upstream 80127 66555186 ~ 66555423 (-)
G288288 NA non-coding upstream 80509 66555568 ~ 66556204 (-)
G287112 NA other downstream 891844 65579791 ~ 65580495 (-)
G287042 NA other downstream 1025056 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 1171922 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 1236431 65235180 ~ 65235908 (-)
G286638 NA other downstream 1396354 65054700 ~ 65075985 (-)
G288578 NA other upstream 367612 66842671 ~ 66842881 (-)
G289678 NA other upstream 1151773 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 1408693 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 1731531 68206330 ~ 68208674 (-)
G290542 NA other upstream 2104044 68579103 ~ 68580707 (-)

Expression


Co-expression Network