LOC110520432 (LOC106586618)


Basic Information

Item Value
gene id LOC110520432
gene name LOC106586618
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66477037 ~ 66489419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597748.2
GGACAGGGTAGGGCCTTTGCTACTGTATTTCAACTTTCAGATGTAGCCTACCTACATTCAAACCACTCTAAATGACTGCTTATGATCACATGTTCTTGTATAATTGGGTAAATTGTTGTAGAAAATGAAAAAGTTTGCATACTGTGCATTTCATATTTTCCACCAGGACTACAGCCTCTGCTATTTATTAAAGCCTGCTTTTCTGCATCTAGTCCATGATGGCATCCCCAAGGCTGGAGACGTTCTGCTGCCCAAACAGAGACGCATCGACTGAATTTGTCATTACTTTTCAGCCCCTCTTCTTTAGCGCCATTTGCATTGGTAGCGCAGGTTTAAGTTTGGTATTTTCTATATTACAACTTTTGCCCAAACGTAGGGGTTACAGACGCCTTGGACAGTACCCTCTTCCCAAGCCAGCGTCTTCGTCGAGAATATTGTTTATCATCAGCATATGTGATATTCTGGGATGTACAGGTATCATAGTGAGGTCATCCATCTGGCTAGGCCTGCCCAACCTTGTCAGAGGGATCAACGTGGCCAACAACAGCGACGTGTGGCCAGAGGTGTTCTGCGTCGGCAGTGCAATGTGGATCCAGCTGTTCTTCAGTGCATCCTTCTGGTGGACCTTCTGTTACGCTGTGGATGTCTTCCTTGTGGTCAAAAGATCTGCAGGAATCAGTACCATCATCCTGTATCACATGATCACATGGGGTCTGGCCGTGTTGCTGTGTGTGGAGGGTGTGGCCATGCTCTACTACCCATCCATCTCCAGCTGTGAGAATGGCCTGCAGCATGCCATTCCTCACTACATCACTACCTACGCTCCTCTACTGCTGGTGCTTATAGTCAACCCTACGCTGTTCGCCAGGACTGTGTCTGCAGTGACATCATTATTGAAGGGACGACAAGGGATCTACACAGAAAACGAGAGACGCCTGGGAACAGAGATAAAAATACGCTTCTTCAAAATCATGCTGGTCTTCTTTATTTGCTGGCTTCCCAACATCATCAATGAAAGCCTGCTGTTTTACCTGGAGATGCAGACAGATATAAAAGCTGGTGACTTGAAGAATATACGAAACGCAGCCCTCATCACATGGTTTATCATGGGCATCTTGAACCCCATGTCAGGCTTCCTCAACACGTTGGCCTTCCATGGCTGGACGGGCTTCAAAGTGGACTGCAGCCTGCAGAGGAGGAGGGAGCTGGCCTGGGACTCAGCCTCCACCTCGGCGGCTAACGTGGGGGGCTACAACCCCATCGTGGGCTCCACCCTGCTCTACCAGAGCCATGTCCAGGAGGCCAAGAACATGACAGGCAAGAACATGACAGGCAACGGGCAGCCGGCCTCCGACGCCATCAGCGTCCTATCAGAAGGTTCAGAGTCTAGTACAATTGAAATCCACATTTCCACTGAGCACCGAGACTATGAGGAGATAGACGCAGATGGAGAATCGTTGGGGAGCTCTGCAAGGCACTAGCTGGAGCCACCTGCAAAACCTGCTGCCAGCCTTCActctctgcacccccccccccccccccccc

Function

NR:

description
G-protein coupled receptor 143-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K08470 OA1, GPR143; ocular albinism type 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597748.2 True 1545 mRNA 0.50 10 66477037 66489419

Neighbor

gene id symbol gene type direction distance location
LOC110520430 mspd2 coding upstream 42411 66412453 ~ 66434626 (+)
LOC110504505 LOC106586617 coding upstream 89697 66370057 ~ 66387340 (+)
LOC110520426 LOC106582091 coding upstream 208222 66209113 ~ 66268815 (+)
LOC110520428 NA coding upstream 244847 66228399 ~ 66232190 (+)
LOC110504495 LOC106586612 coding upstream 315618 66107867 ~ 66161419 (+)
LOC118964315 LOC106605670 coding downstream 65135 66554554 ~ 66555551 (+)
LOC110520433 LOC106586620 coding downstream 73369 66562788 ~ 66630141 (+)
LOC110505407 LOC106586622 coding downstream 293990 66783373 ~ 66787442 (+)
LOC110520434 LOC106586623 coding downstream 311176 66800595 ~ 66809696 (+)
LOC110520435 LOC106586624 coding downstream 374699 66864118 ~ 66997509 (+)
G288042 NA non-coding upstream 78910 66397892 ~ 66398127 (+)
G288023 NA non-coding upstream 109531 66367287 ~ 66367506 (+)
G288019 NA non-coding upstream 117364 66359395 ~ 66359673 (+)
G288014 NA non-coding upstream 126612 66349557 ~ 66350425 (+)
G287998 NA non-coding upstream 146971 66329774 ~ 66330066 (+)
G288254 NA non-coding downstream 66998 66556417 ~ 66556859 (+)
G288341 NA non-coding downstream 143939 66633358 ~ 66633567 (+)
G288372 NA non-coding downstream 168937 66658356 ~ 66663722 (+)
G288385 NA non-coding downstream 180571 66669990 ~ 66670440 (+)
G288403 NA non-coding downstream 191024 66680443 ~ 66680739 (+)
LOC118964312 LOC106586611 other upstream 440835 66027633 ~ 66036299 (+)
zmym2 LOC106586592 other upstream 1191481 65260200 ~ 65311166 (+)
LOC110520396 LOC100136409 other upstream 1310457 65161342 ~ 65166580 (+)
G286679 NA other upstream 1367400 65109256 ~ 65109637 (+)
G285763 NA other upstream 2169677 64306512 ~ 64307360 (+)
G288252 NA other downstream 60403 66549822 ~ 66550487 (+)
G288430 NA other downstream 241867 66731286 ~ 66733797 (+)
G288674 NA other downstream 503752 66993171 ~ 66994131 (+)
LOC110520448 LOC106586634 other downstream 908538 67397151 ~ 67409646 (+)

Expression


Co-expression Network