LOC110520431 (LOC106586619)


Basic Information

Item Value
gene id LOC110520431
gene name LOC106586619
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66490468 ~ 66537895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974988.1
AACGATGTCAACTTGTTATTTACTTTCCAAATCTGAATGACTGAGCAATGCCAAAGGAGAATTAATCAACCACTATGTGACCCTACAGGCGAAAAATACAGATCGGTGGGGGAGGGGATTCAACTCAAAGGCCAGATACAATGTAGGGTTGCATCATGTGAAGATTACTACCGTAGCCCTTTTACCAGATCCAACCAACCCAAGGTCTTTGGCCTTTGTGCATTAGAAACATTAGTCATTTTCTAACAAAGCTGAGATTATAATGATTGCAATTCTTCAAACTTGGAATTCCCGATTCacttcaaatatatattttgggaTTACAGTGTAGTTTATTCTTGATTGATGTAGATGTGTAATCAAACAATAATATTTTACCATATAAAGTAATACATAGGCCTACTTTAAAATAATATCACACAATATGTTTTGTAGGGGTTGCAATTACATTAATCAATAATCATTGTTATCATCACTCAATTTATATTTGTCTTTTAAAATGGCAAAATGCATTGTAAAAATTACAAGTAGGCTACCAAATACAATACATGACTATAGCTACAATGCTCTTTGGTTGAAGTTTGCAGTGGCCATGTTCTGAGACCACATATAGCCTACATGTACATGCAATTATGTACAATAAATTAACTTGAGGCAATAACAGCTAATaaccatcatttttaaatggcaCAATAGAGGAAATCATTGAAGAGAGGTCAAACAATGCCATTCACGTGCATTAGAATTGACTATAAATTCTCATTTTTTATCTATAAAGAACATGGCATGTAGGCAAAATAACATCATGGTATTTCGTTACCATTTAGGCTACTGGAAGGATTTTTATGTTTTGAATAAGCAGGATCAAGGTCAGGTGCTGATTTTTTCATTGTAGGTCAcgacagtctctttctctctctctcagccctctttCTCTATGCCGATGAGCGCTTGCTGCTGTCTCTTGACGTTCTATTTTCAGAAACGGTGAAAACTCAATTGCATACATCCCCAGCTTTAGACCTCGCGCTTCTTTAAACTTTACATGCCACACAATCATTTGCCAGGAATATATATTTTAGACCATCTCTGTTACCTTCGGAACGCAGTTAGAGATAGCAGCGGTGGACAGAACTTGAAGTATGATAAGCAAAATGGGAGGAAAGTCTTCCCTTGCTTATTGAGTTGCAGGCTCTCCTTGTGGAAGTGGAAGAGGTGGCGGCAACACCACGAGCTCACTCTCTGAGAAAGaGTGGGCCGATCTTTACTAGATACAGTACCTCCTCCATCGAGGTGGGCTAAGATGAGTATAACCAGTGATGAAGTGAACTTCTTGGTATACAGATATCTTCAGGAGTCAGGTTTCTCCCACTCAGCGTTCACCTTTGGCATTGAGAGCCACATCAGCCAGTCCAACATCAATGGAACACTAGTGCCCCCTGCTGCCCTCATCTCTATCCTGCAGAAAGGCCTCCAGTATGTGGAGGCAGAGATCAGCATCAACGAGGATGGCACGGTGTTTGATGGGCGGCCCATTGAGTCTCTGTCACTCATCGACGCGGTGATGCCAGATGTGGTGCAGACGCGGCAGCAGGCCTTCCGCGACAAGCTAGCCCAGCAACAGGCGGCCTGCGCCATGGCAATCACCGCCGCAAGCAACCAACCCAATGCACCAAAGAACGGAGAGGCCATTGTAAACGGAGAGGAGAATGGCACACACACCATGTATAACCACATTGAGCCCATGGAGATGGATGTGGACGTGGAGATCCCAGCCAGCAAGGCCACGGTCCTCCGAGGCCACGAGTCAGAGGTGTTCATCTGTGCCTGGAACCCTGTCAGCGACCTGCTGGCCTCAGGgtcggGAGACTCGACAGCCCGGATCTGGAACCTGAAtgagaacagtaacagtagttcCACCCAGCTGGTGCTCAGACACTGCATCAGGGAGGGAGACCAGGACGTCCCCAGCAACAAAGATGTCACCTCACTAGACTGGAATAGCGACGGGACACTCTTAGCAACAGGATCTTATGATGGATTTGCAAGGATATGGACAAAAGATGGTAATCTGGCTAGCACCTTGGGGCAACATAAAGGTCCCATATTTGCACTGAAGTGGAACAAGAAAGGAAACTCTATCCTCAGTGCTGGTGTAGATaagACAACaatcatttgggacgcacacacaGGAGAGGCCAAGCAGCAGTTCCCCTTCCACTCAGCTCCAGCCCTGGACGTGGACTGGCAGAACAACACAACGTTTGCCTCCTGCAGCACAGACATGTGCATCCACGTGTGTCGAATGGGCAGCGACCGGCCGCTCAAAACCTTCCAAGGCCACACGAATGAAGTCAATGCTATCAAGTGGGACCCGTCAGGGATGTTACTAGCCTCCTGCTCTGATGACATGACTTTAAAGATCTGGAGTATGAAGCAGGACTCGTGGGTCCATGACCTCCAGGCCCACAGTAAGGAGATCTACACTATCAAGTGGAGCCCTACCGGCCCCGGCACTAGCAACCCCAACTTCAACATCATGCTGGCTAGTGCCTCGTTTGACTCGACGGTGCGTCTGTGGGACGTGGAGCGAGGTGTGTGTATCCACACCCTCACCAAACACCAGGAGCCTGTTTACAGTGTGGCCTTCAGCCCCGACGGGAAGCACCTGGCCAGCGGCTCCTTCGACAAGTGTGTACACATCTGGAACACCATGtCTGGAGCCTTGGTGCATAGCTACAGGGGGACTGGAGGGATTTTTGAGGTGTGCTGGAACAGCACAGGAGACAAAGTTGGTGCTAGCGCTTCAGATGGATCGGTATGTGTTCTCGAGCTCCGAAAATAGCATCCTGCCAGTGATTTTGAAGATGGACCCTGGAATGTGCAGAAAAAAATGCCTTCTGCCATCAGCAAACACACTCTAATGGTTCAGAGCAGGCCTGGCAACGTGGAGGACAACCTCAGAGTGGACACAGGAGACCAACAAAATACTTGTTCTAACTATTACAACCTACTCAATGGATTTGTGTCTCTTGTTTGAGACCACAAAGACAATCTGCTGGGTTAATTCATCCACAGGACTGGACTAAATCTAATAATAGTTGTTCAGCCATGCTTTAAAAGGTGCCTAAAGAGGAAGTGAAATGACCACCTACCCCTGCTGTTATTTAACTAGGGCCTGAATCATGAGGAAGGTTTGCTGAGGTttgggtgtgtttggggtcatattGTGAGAGAAAGGTTGTGTTTTAGAATGTATCTAAGCACATGTTAACCCTATGGTGTCCTGAGTTGAGAAACAATGTGGGAGACATGAGGAGAGTGACATTGTTAGTGCTGCACTGGCCTCCTCAAATGTGATGTTTAAGTTGTCCTGAGTGGGAAATGGTTTCTGTTTCAAGAGCTCTTCTTGCAAATTTTTCTCAAATGGACTTTTGAAAGTCAGAGTAACACAAGGCGTTGCTATGAGGTAGTTCTGTTCTCACATTTAATAACACCATTTCAATGAAGAAAAAACTAACTTGTAATGATGTTTTAATTCACAtgaggaagaaaaaaaatatttttgtggACATCTTTACAAGATGCATAAAGTGGTTTATAAGTATTCTCCCTTCTGGATGTAAATTTTATGAATGTAAAGATATGTGAATTAGATGAATACACAGACTTATATACTGCGTATATATGTTTATTTACATTACACCTTGGCGTCATCCTCTAGACGCTCAATACTGGCTAGAGATATTGCCCCTTTTCTTTGCTGATACTCAGTTACAAGACCCTGATTACATTTAAAGCATGTCAGAATAATTTTTTCACCATGTATGTTCAGTCTACCAGTTATGTGTGCGTCAGGTTGGTTTGTCAAGTCAGGTGGCGCTGAGGTGGACTGTAGTCATTTCACAAGACGTGTCAGTGAATTTAGTCTGTATTCAGTCCTAATGACAACCAATGAAATGGAGAtcagaacagacagagaacatGATGACTGACCAGGAGagaccaggaggagaggaggctgtgaATGTTTTAATTGTGTTGTCTCAATGTTGCTTTAGTAGCAAACTGTCATCACTAGTCATCTATTGATATTTTCTAACAGTACTCCTCTGTTTGGCACCGCAAGCTATCTGACGTAAACCCAGGTTACACTGACCGATCAATCTGATTGGTCAAGCGAAAGTCCTGCTGTAGCTTCTAAGCTGTGATTGGTTGAATTCAGTGGAGGTCCTGATGTCTCCACTGCCTGATCTAATAGGTCAGATTTGACTTCTGATTTGAGATACCTGTATAATGGGTTTAGCTTTAAATGGGGAAGTTCGTTTTTCATGGCCCGTTGAACATTTTAGACCTCTCCATTGGTACTTAAGTGAAATCACCCAGGGCACCGGGCCATGCCAAACGAACTGGCCCGTTGTGTGCTGTATGTATACTTGTACTTACTATGGTCTAACGTGATATCTGTCTCTTCGAACTAACAAACTGACAATGCCTGTTtgtcccttttctctctttcagtCAAGATCATTTTAAGAGCAATGTGTGAAGTGCACTTTTTCAGAAGGTAGGATCAGCTTTTGTTTGGGTTTGTGATGAAAGGGGAAGGCCAGCATTTTTATTTCTTGTTATTTTTACGGCATAATCGGGCGTTGATTGATGGAAGGTTCATTGTCTGACTTATTTTTTGTTGCTGCTGAGAGCCATTATTGTCTGTGTCAGACTGAGAATCGGACTGTGGTTGGTGGCCATCTTGGCATGCTGAGAAGCCCAGTGTGGAATAATATGCTGTGACTGACAGCGATCACTCTCCCCCACCCAGTCTAGGGTATGGTCATCTGTTTCCAAGACTAAACAATGAAATCACATTATGTCTCAAATAAAGCACTCTATTTTGATATTAGAAAAGCC

Function

NR:

description
F-box-like/WD repeat-containing protein TBL1X

GO: NA

KEGG:

id description
K04508 TBL1; transducin (beta)-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974988.1 True 4911 mRNA 0.44 15 66490468 66537895

Neighbor

gene id symbol gene type direction distance location
LOC118944607 LOC106582097 coding downstream 15409 66472339 ~ 66475059 (-)
LOC118964314 NA coding downstream 78095 66400067 ~ 66412373 (-)
LOC110520429 LOC106586615 coding downstream 194581 66268185 ~ 66295887 (-)
LOC110520425 LOC106582038 coding downstream 296981 66183116 ~ 66193487 (-)
rnf17 rnf17 coding downstream 420334 66036342 ~ 66070134 (-)
LOC110504514 NA coding upstream 194342 66732237 ~ 66747293 (-)
rpe rpe coding upstream 482559 67020454 ~ 67023408 (-)
LOC110520437 LOC106586625 coding upstream 528462 67066357 ~ 67078648 (-)
LOC110520442 LOC106586628 coding upstream 686966 67224861 ~ 67236245 (-)
LOC110520443 LOC106586629 coding upstream 737834 67275729 ~ 67286960 (-)
G288172 mospd2 non-coding downstream 69538 66418818 ~ 66420930 (-)
G288116 NA non-coding downstream 154552 66335701 ~ 66335916 (-)
G287993 NA non-coding downstream 167872 66322367 ~ 66322596 (-)
G287992 NA non-coding downstream 168276 66321993 ~ 66322192 (-)
G287976 NA non-coding downstream 181158 66309078 ~ 66309310 (-)
G288284 NA non-coding upstream 6772 66544667 ~ 66544890 (-)
G288286 NA non-coding upstream 11806 66549701 ~ 66550419 (-)
G288287 NA non-coding upstream 17291 66555186 ~ 66555423 (-)
G288288 NA non-coding upstream 17673 66555568 ~ 66556204 (-)
G288290 NA non-coding upstream 20116 66558011 ~ 66558269 (-)
G287112 NA other downstream 909973 65579791 ~ 65580495 (-)
G287042 NA other downstream 1043185 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 1190051 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 1254560 65235180 ~ 65235908 (-)
G286638 NA other downstream 1414483 65054700 ~ 65075985 (-)
G288578 NA other upstream 304776 66842671 ~ 66842881 (-)
G289678 NA other upstream 1088937 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 1345857 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 1668695 68206330 ~ 68208674 (-)
G290542 NA other upstream 2041208 68579103 ~ 68580707 (-)

Expression


Co-expression Network