LOC110520434 (LOC106586623)


Basic Information

Item Value
gene id LOC110520434
gene name LOC106586623
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66800595 ~ 66809696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965109.1
AAGAAAAGATCATAACACCACACATATTaccacagacagatacacagacagacagaccggagGTGTCTAAGAGCAGATAACTGAAACTGGTGTGTAGTTGATACAGCCTTGTGTTTGGTGTGCAGTTTGGCCTAGCGTGTCGATCAGTTAGGGGCAGGATGGAGTGTCTCCAGCCGTACATTACCAGTATCCTGTTCTTCCTGAGTGGACTCATCCAATGGGGCGGGGCCAGGGTGCTTGTGGAGGTGCAGTCTGGCCCTCTGCATCGTGTGATTGGCTACCCTATCTCCATCTCCTGCAACGTGAGTGGCTTCTCTAACCCGTCGGCCCAGCAGGACTTCAGATTCTCAGTCTACAAGCCAGAAAAACCCACCCAGGAGATCCAGATCATCAGCACAGATGACAAAAACTATGCCATGGCGGTGTACGGTGCCCGCGTCAGGGAGGGTGTCATCACTCTGGAGCGCCTGTCAGTGACCTCGGTCCTTTTCCACGTGAAGAGTCTGGTGGATGGGGACGAGGGAGAGTATGAGTGCCACACCCCAAACTCAGAAGCTGTATATGACGGGACATACAACGCAAAGACCACATTGAAGgTGATTGGGGACACCCTGACCGCCTCCTCCACTGGCCCCGCCTCCTTTAGCCTATCAGAGGGTGACGACCTAACCCTGCAATGTCTCGCCTCCAGTAACACCTTCCAGCACACCCACCTGTCCATCACTTGGTATCACCATGGAGACAGGGAAGCCTCACCCCACCCCATCATCTCCCTGGACCGTGATTTGAAGGTGAGTCCGGGTCAGCGGTTTGAGGGTCGATACCAGGCAGGGTTCATTGTTTTGGACAAGCTGGAGGAGGCCACCTACAGGCTGAAGATGGCCAGGATTAAGCTGTCCGATGCAGGGAGGATCTCCTGCCAGGCCCAGGAGTGGATCCAAGACCCAGACCGGAGCTGGTACCCAATCGCCCAAAAAGACACACAGCCAACCACTTTGGAGGTCAAAGCCATAGtGGTGGCTACAGACCAGGGCTCTAGTTCTATGGTGGTGAGTATGACCGTGCACAAAACACACCTTCAAGAGGGGGAGGAGCTATCCTTGCAGTGCATTGTGAACACACAGGGCCCGGTGGGCCAGTTCTTCTCAGTGGCCTGGGTCAAGGACAACCAGGAGCTGGCCCATATTGGGCCCACGGGGGTCCTGTCTGTGGGGCCGGAGTATGgggggcgagagagggggggtgagctGAGAGCTGTGCGAATGAGGGAGAAGACAGACCTGCTCACCCTGCGACCTGTCAGAACCCAGGACCAGGGAGTGTACCACTGCAGGGCCTGGccagaggagagggatgggaacGGGGTCTTCACACAGGGATCCACCCAGGACTCCACCACAGAGACTATCACCATCACAGCTACAGAAAGTGGTTTGGCTGTTGCCATGGAGACCCAACAGGTGAGTGTTGACGAAGGGGATGCGCTACAACTCACCTGTAGAGTGAGCGGGGTCAAGGGTCAGCTCTCTGTCACCTGGCAACACAGATCAGCCTCAATGGCAACAGGCCCCTTCAGTGATGTCATCAGCCTGAGCCGTGTGGGTGTGATGGAACTGGGGGCAGAGTTTGGGAAGCGTAATGTTCGTACAATGCGTCCCATGGCAGACATATTCACCCTGGAGCTGGGTGAGGTCACGCCCTCTGACGCAGGAGCCTATCAGTGCACCGTCTCTGAGTGGACCACGGAAGCCAACGGCAACGGCAAGAAAACTCACAGCCAATCACAGGACTGCAGCGTAGAGGTTCATCATGTGGAGTCTCTGCTGAGTGTGTACCTGAGTAGTCGTGGTGTCCAGGTGACAGTGGGGGGTGAGGTGGAGCTGGTGTGTCGGGTTCAAGGGCCCTCCCTCCCGGTTACTGTAACGTGGAGCCTGCAGCGTGAGGGGCAGTCTGCCCCAGACAACATCCTGACCCTGTCGTACACTGGTGACATCACGTGGAGTGGCGACCAGAGCAACTACCAGTTGAGGGCGACCACCGGGAAGAAGGAAGTGCGTTACTACCTCCGCATCATCAAAGCGAGCCACAAGGAGGCTGGGCGCTACCAGTGTGTGATCTCAGTGTTCCTGCAAGGGAGACACAGGAAGCCACAGAACTCCAACGCTCTGGGTGTGCTGGTCCAGAATCCAAagGGTGTACTCACCTTGTCCTCTAGCTCCTcccctctggataagagtgtcaaGACAGACATACAGATGGAATGCTCCGTAGCCAAAGCAACCTCAAACTTATCCCGCTTCGCTGTCAGCTGGTTGGCCCAGAAGAACGGGGAGGGGAACAAGACGGTCCTCAGCTCAGACCGTGATGCTGTGATAAGGCTAGGGCTGGGATTAGGCACAGAACAGCGAATCAGCATGAGAAGACGTGAGGGGCGGAGCTTTGAGCTGACCATTCGACAGGCCCGTAGCTGGGACAATGGGATGTACTACTGCGTGGTGGAGGAGTGGCTACAGGATCCTCACGGCCAATGGTACAAGCTCCCGCCCTCTTCTGCAGCCATGGAACTCCGCCTAAAAGAGACAGAAGACAAACAGGAGACAGAggtcagagagggggagggagtggagCTAACTTGCACTTTGACCTCTGGTGCTTCTGACCCCACCTCACTCTACGCCCTCACCTGGTTCTACTTGAAGCgtggctcctcctcctcttccagagTTCCTCTTGTAATTCTGGGTCGTGACGGCTTACTGAAGTACCCAGGTTACAAGTGGCTCCAAGACCAGAAGGGGAGGCTGATTTTCTCCAGGCCCACTCATGGTACCTTTCTGCTGGGTCTGCAGAGAGCTCTTCAGGGTGACAGTGGAGTCTACCAGTGCCAAGTGGACCAGTACAAGCTCAATCATGAGGGCATCTGGGAACAGACTGCTTCAGACCAATCAGGCACAGCTGACCTCACAGTAAAACCAATAGaGAGTGTACTCACCTTGTCCTCTACTCCATCccctctggatcagagtgtcAACACAGACATACAGATGGAATGCTCCGTCGTCAAGCCAACCGCTAACTCCTCCCTCTTCGCTGTCATCTGGTTGGCTCAGAAGAAGGGGGAGGGGAACCAGACCATCCTTCACTCATACCATGACGCCGTGGTGACGGTAGGCCAAGGTGCGGGATTAGGTGGTGAACAGCGAATCAGCATGAGGAGACGTGAGGGTCAGCGCTTCGAGCTGACCATTCGACAGGCACGTAGCTGGGATAGTGGGATGTACTACTGCGTGGTGGAGGAGTGGCTACAGGATCCTCTTGGTCGATGGTACAAGCTCCTGCCCTCTTCTGCAGCCATGGAACTCCGTGTACTCCAGACAGtgacTGACCTCAGTGTTAACCAGACAGATCTGGAGATGGAGGtcaaagagggggagggggcagAGTTGACCTGTGCCTTGACCTCAGGTGACCccgcctctctctactctctcaccTGGTTCTACATGAGGAgtggctcctcctcctctcacagggTTCCTCTAGTGATTCTGGGCCATGATGGTGTCCTGAAGTACCCTGAGGACCAGGACAACCAAGGGCTCCAGGACCAGAAGGGGAGGCTGATCTtctccaggcccacccatggtaCCTTTCTGCTGGGTCTGCAGAGAGCTCTTCAGGGTGACAGTGGAGTCTACCAGTGTCAAGTGGACCAGTACAAGCTCATTCATAGCAACTGGGAATTAAGCGCCACCAACCAATCAGGAACAACCAACCTCACTGTACGACGACCAATAGAAGATGTGTCTGAGTTGCTGTCTGAACGAGGATTAGTTACTGAATCAGTTCTAGGCATCTTCATCTCTCTTGTCTGTATCCTGGTGATTCTTGTCGTGGTGCTGTCAATCAAGCTGAAGCGGCAGGGCTCACCTGGGAACAAGAAACAGGCCAAATCTCTGTGGCAGGAGTTTAACCCACTGAATCCATGCCCAGAAGACTGAGCacatgggagaggagagaagtgaaacagagagaggatgCGTAGATGAGAGGAAGAGTACATCAGTGAGGAGAAGAcatgaggagagaaaaggagaggatgtGGGATGGGGAGGGATGATAAGAGTGGGAAGGGGGATACGTGAGAGAACAGGAAaggagatagggggagagggcAGAATgagctttttttttaaatgttaatgtGGTTGATTTTTGGATCCAAGCATGCTTTTTACTTGTTTACAAATAGGATTTACAGTTGCACACATTTTCTAGAACTTGAAATGTACATTGGCACTGCTTTAACTTTGAGACTTTGAAACTTTTTTCAAACTTAGTTTTACATCAGTATTCTCTGATGACTCAAAGCTCAAAGGATCATGTCTGATCATTGTTTGTATGAATGAGTTTTTCACAAATATTATATTTGTGAATTGTTGAAAGATATTCTGCCATGTTCTGTACTTATTTGTAGCGTTTTATTTCTCCACTTGTTTGAGTTGGGACTGCTTACGAGACTTTTAAAACACTTCTGAAAGAACTCTGAGAAAGACTTTATGGTATCACAAACATTTTATATGAAGAGGTGAATAAAGCGCTGCTCTCAGACATGTATCATTTGTAAAGTTGCTGGTGTATTATCTGGTTTGTAATAAATAGAGTATTAGCACATGA
>TU327116
ggcAGAATgagctttttttttaaatgttaatgtGGTTGATTTTTGGATCCAAGCATGCTTTTTACTTGTTTACAAATAGGATTTACAGTTGCACACATTTTCTAGAACTTGAAATGTACATTGGCACTGCTTTAACTTTGAGACTTTGAAACTTTTTTCAAACTTAGTTTTACATCAGTATTCTCTGATGACTCAAAGCTCAAAGGATCATGTCTGATCATTGTTTGTATGAATGAGTTTTTCACAAATATTATATTTGTGAATTGTTGAAAGATATTCTGCCATGTTCTGTACTTATTTGTAGCGTTTTATTTCTCCACTTGTTTGAGTTGGGACTGCTTACGAGACTTTTAAAACACTTCTGAAAGAACTCTGAGAAAGACTTTATGGTATCACAAACATTTTATATGAAGAGGTGAATAAAGCGCTGCTCTCAGACATGTATCATTTGTAAAGTTGCTGGTGTATTATCTGGTTTGTAATAAATAGAGTATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965109.1 False 4677 mRNA 0.53 11 66800595 66809696
TU327116 True 497 lncRNA 0.32 1 66809193 66809689

Neighbor

gene id symbol gene type direction distance location
LOC110505407 LOC106586622 coding upstream 13153 66783373 ~ 66787442 (+)
LOC110520433 LOC106586620 coding upstream 170454 66562788 ~ 66630141 (+)
LOC118964315 LOC106605670 coding upstream 245044 66554554 ~ 66555551 (+)
LOC110520432 LOC106586618 coding upstream 311176 66477037 ~ 66489419 (+)
LOC110520430 mspd2 coding upstream 365969 66412453 ~ 66434626 (+)
LOC110520435 LOC106586624 coding downstream 54422 66864118 ~ 66997509 (+)
LOC118944634 NA coding downstream 245180 67054876 ~ 67058489 (+)
LOC110520438 LOC106586569 coding downstream 338869 67148565 ~ 67151482 (+)
LOC110520439 LOC106586626 coding downstream 360557 67170253 ~ 67173369 (+)
LOC110520441 LOC106586627 coding downstream 367665 67177361 ~ 67223961 (+)
G288527 NA non-coding upstream 3693 66796018 ~ 66796902 (+)
G288526 NA non-coding upstream 4958 66795437 ~ 66795637 (+)
G288471 NA non-coding upstream 8016 66792358 ~ 66792579 (+)
G288470 NA non-coding upstream 10480 66789879 ~ 66790115 (+)
G288469 NA non-coding upstream 10927 66789388 ~ 66789668 (+)
G288573 NA non-coding downstream 29457 66839153 ~ 66839353 (+)
G288574 NA non-coding downstream 29997 66839693 ~ 66839918 (+)
G288577 NA non-coding downstream 32562 66842258 ~ 66842465 (+)
G288580 NA non-coding downstream 34784 66844480 ~ 66844720 (+)
G288583 NA non-coding downstream 35815 66845511 ~ 66845856 (+)
G288430 NA other upstream 66798 66731286 ~ 66733797 (+)
G288252 NA other upstream 250108 66549822 ~ 66550487 (+)
LOC118964312 LOC106586611 other upstream 764393 66027633 ~ 66036299 (+)
zmym2 LOC106586592 other upstream 1515039 65260200 ~ 65311166 (+)
G288674 NA other downstream 183475 66993171 ~ 66994131 (+)
LOC110520448 LOC106586634 other downstream 588261 67397151 ~ 67409646 (+)
G289116 NA other downstream 665277 67474973 ~ 67478929 (+)
LOC110505416 LOC106586647 other downstream 709630 67519326 ~ 67520162 (+)
G289455 NA other downstream 815657 67625353 ~ 67632210 (+)
G288535 NA non-coding upstream 5387 66803477 ~ 66803806 (+)

Expression


Co-expression Network