LOC110520435 (LOC106586624)


Basic Information

Item Value
gene id LOC110520435
gene name LOC106586624
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66864118 ~ 66997509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597754.2
TTGATCAGAAACACGTGTGACGTTTGAGGCTATTTTCGCCGGTGTGGAtgtatcaatatactgtatttgtgCCCGAACAGCACATTGTGTAGGCGATGCACAACACTCAACTCTCTGATCAACGGGAATAGACATTTCTGTGACTATTATAAACACGTAGCTAATACAATAAGTAGTGTGGTTAACTTGCGATGGACTCGACCTATTGACGAATTCGTGCGGAGGTCCTTCCTATGTAATATTGCACTGCGTGCTCTGCGGCGACAGCGCCCGCCCATCGACTTTTTCTCCTAGCAGAGCAGTGAAGGGAGATTGATTTTACTGGAGCAGCCGTGGAGTGTGCACGACCTGCATACGTTTGGGTAGAGCTATTGCCGCCGGAGGAAGTATTGATTTACTTTCTCACCAAAGGACTTTGCATACAGATTTTTCGTATTGATCCGAACATCATGATGTTGGCTAATTTCTAAATTGCGCACCACGAACgcaagacatacacacacaacgcTGGACTCAGGACTCCCTGCTGAGGTGGTTTGTCATCCTACAGCGAAGCGCCTCCGCAAGGGAGAATGGGCTGGGTCGCCTAGGCGTCTTTTATGGGCGCATTTCATTGACAATATGAGAAATCGCTGAAGGCGATAGTAGAGACAAGCGACACCCGAGTATACCGAGCCCCGCATCCCAGAGCAGGATACGGGAGATAGGTGAGGGCATCCCATAGGCAGTAGGTGGAGGGGATTTTACTCTCAAGCCAGCCCAGAAGCTTCGATCCTCGGGGTGTACCAGAGCTGCCCGACGCCGGATACCGAGTCGGCCGCAGACCCCTCATTTCCCCTTCAATAGACCGAAGTTTTGCGCCTCCAAACGGATTATAGGAACGGTTTCTGCGGAGAGGGAGAAACGGGAGACAATGGGCATCCACACGCTCCTTATTGCATGTGCGCTGCTTGGCGTGAGCGTGGCCCAAAGGGTAGTGACCGTTCAGAGCGGACCACTTGTACGGACGGAGGGCAGTCACGTGACCATCTGGTGCAACGTGACTGGTTACAAGGAGGGCGTGGAGCAGGACTTTGAGTGGTCCATGTACCTGACCTCGGTGCCCGACCGCGAGATCCGCATTGTGAGCACGGCCCAGTCCAACTATGCGTATGCGGTGTACGCCCAGAGGGTCAACAGTAAGGAGATCTGGGTCGAGAGGCTGACCAGGGACTCAGCCCTGCTCCACATCACCAAGGTCCAGGCCAGAGACCAGGGGCTGTTTGAGTGTTACACCCCCAACACAGATGGACAGTACCTCGGCTCCTACAGCGCCCGCACCAACCTCACCGtCATCCCCGACTCCCTCGCTGTCACTGCGCCGCCACAGACCCTCTCCCAGGTGGAGGGTGACACGCTCCAGCTCACCTGTGAGGTTTCCCGGGCGACAGAgcagcacacacacctgtctgtggGTTGGTACCTGCGTTCCCCTGAGGACGCTACCATGTCGCCCCAGGAGATCCTCACTCTGTCCCGAGACTTTGTCCTCCGGGCCGGTGCGCCTTACAAACAGAGGATGACTGCAGGAGACCTGAGACTGGATAAGACCAGCCCTACGTCCTACAGGCTGACCATCCACCGGCTGCAGCCTGCTGACCAGGGCCTGCTCTACTGCCAGGCTGCAGAGTGGATCCAGGACCCCGACCGCAGCTGGTTCACCATGACCCGCAAGCAGGCTGATAAGACCCAGCTACGGATACAGCCCATTGATCGGGACTTCTCTATCCAGGTGAGCACGGAGCGTCGGTCCTTCACAGCGGGCGAGCCGCTGGAGCTGCGCTGCACCATCGATGCCCAGAGCGTGCCCGAGCGCTTCTTCTCGGTGTCGTGGGTGTTCAGCAGCTCGCCGGTGGCCGTGATAGGGCCCAGCGCTGTGCCCGTCCTGGGACTCGACTACGTGGCGCGCGAGGCCGCTGGTCACATGACTGTGCGCAAGGAGAGCCCCACTGTGCACTTGCTTAAGCTGCAGCACCTCCGACCAGAGGATGCTGGGAAATACATCTGTAGGGTCACGGAGAGGGAGAAGACACCCACCGGGGACTTTATAGACCGGAGCAAGAGGTCACGCAACGTCCAGATCACCGTCCAGCCCATCAagAGTAATGTCACAGTGTCTTTGTCCAGTAACTCGTCGGAGGTCCAGGAGGGGGACGTGGTCCAGCTGACCTGCTCCATCCACTCCACCGCGGGTCCTCTCTCTGTGGTCTGGCAGTGGAGTGAGAAGCAGGGCTCCACCCCTCCCCAGAACCTGGCCTCTGTAGACCGCGACGGGACTGTCCGACCAGGCCCTGGGTACCGTGAGCGTTCCAGCTACGGGGAGATCCGTGTGGAGAGGGTACAGGAGGACATTTATACCCTGTCCCTCTACAACGCCCTGCCTGGGGACGAAGGGCTGTTCTGGTGCACGGCCACAGAGTGGGTGGAGGCCGGGACAGAGTCCGAGCAGAGTTGGGAGAAGATAGGGGAGAAGTCAGCTACTAAGGCCATCACTGTTAAGACCGTGGAATCCTCCTTTGTGGTCTCGGCGTCGTCGCGGACGCCCAGCGTGACATTTGGCGACTCGTTTGACCTCCAGTGCCTGGTGAAGCCCCGCCATAACCCTCGTGTGCCTGCCTCTGTCACCTGGCGCTTCATGCCCGCCAGTTCGGGCTCTTCTGGGGAGGTTGGCACAGCAGGCATGTTCCGAGACCTGGTGACATTTACCCGCGAGGGCACGCTGCAGTGGGGCGAGCAGCTGCTGGGCCTGGGCACCCGCACCACCGTGGACCGTTCCCATTCCAACACCAACTTCAGATTGTCTGTGACGCGCGCTGGGCGCAAGGAGGCGGGGACGTATCAGTGCTCTGCCCTCCTGTGGAGGAGGAACTACGACAACACCTGGAGCAAAGTGGCCAACAGGACGTCCAACCTGCTGGGGATCAGCGTGTTACAGCCAGTGTCTAAGCTGCGTGTGCAGAAGACCAACCAGTCCCTGGTCTACCTGGAGGACAGCCGTGTGCGCGTCAACTGCTCCGTGGCCTCTCAGACCAGCACCGACTCACAGCATGCCATGCTTTGGTACGTGCGCCGCGCAACGGGTGCCGAGGCCGACGAGCTCCTGCTGAGGATTGAGCGCTCAGGTGCATTTGAGTATGGCGCGTACGCAGACGAGGAGAGGTTGAGGCGGCGGGTGCAGGCAGAGAGGATGTCGCCACAGCTGTATGCGCTGACACTGAACAGGGCAGAGAGCAGCGACTCTGGGACTTACTACTGCCTGGTGGAGGAGTGGCTCACAGATCCAGACGGAGCCTGGTACAGACTGGCACGGGACTCCTCAGGCTTCACACAGGTCCTCGTCAGACAGCCAgaGGTGCGGTTACAGGTGGAGGAGTCCGAGTCTAATATCACCGTGTCCCAGTCCAGTTCCATCCGGTTGGGCTGTAGCATCCCCTCCCAGTCCTCCAGAGACTCCCGCTTCTCCGTGTCCTGGTATGTGGAGCGCTCCTCCATGCTCTCTGAGGAGGAAGACCAGGGGGATGTTGACGAGGGAAACCGGGCCTGTGTGTTCTCCATCGGACACGACGCCGTGTTCGGGAACGGGAACTGTAGCCCAATCGAGGAGGCGGGGCCTAACTCACGCCTGCAGTTTGAGAGGAcgacctctgacctctacagtCTGACCATCCAGGGGGCGCGACCCGCTGACGCTGGGCGCTACTACTGTCATGTGGAGGAGTGGCTGCTCAACCCCCGCAACGCCTGGTATCGCCTGGCAACCAACAACTCTGATGTCACCATCGTCAACGTGATCCAGCAGGtctCCACCCTGCAGTCGGTGGTATGTTCCAACGACTCTCTCTTCTACTTTGTCTTCTTCTACCCGTTCCCCATCTTCGGCATCCTCATCATCGCCGTGCTCCTGGTGCGCTACAAGAGCCACAGACACAGCAAATCCCAGGAGAGCAAGAACGGCGCCCCCTTACTGTGGATCAAAGAACCCCACCTCAGCTACTCCCCCACCTGCCTGGACCCACCCGTCCTCAGCCTGCACCCCGGCTCAGTGGACTAAGGGACAGATCCATAGCCCTCATCCCATAGTCCTCATCGCGGACCCAACTAATACCACGCCAGGGAGGGGCTACTCCGGACCTCCACCTGTCTAATCACTTCTGTGTCCAAGCTGTCAATCAATCCGTCCATCCATGTATAATCCCACccccctgtctgcctgtctgtgagtTACCCTGTAGCAGCTCtgttgtgtgggtgggtgtgtgagcatgtggaaaagtgtgtgagcat
>TU327227
GCCGTGGAGTGTGCACGACCTGCATACGTTTGGGTAGAGCTATTGCCGCCGGAGGAAGTATTGATTTACTTTCTCACCAAAGGACTTTGCATACAGATTTTTCGTATTGATCCGAACATCATGATGTTGGCTAATTTCTAAATTGCGCACCACGAACgcaagacatacacacacaacgcTGGACTCAGGACTCCCTGCTGAGGTGGTTTGTCATCCTACAGCGAAGCGCCTCCGCAAGGGAGAATGGGCTGGGTCGCCTAGGCGTCTTTTATGGGCGCATTTCATTGACAATATGAGAAATCGCTGAAGGCGATAGTAGAGACAAGCGACACCCGAGTATACCGAGCCCCGCATCCCAGAGCAGGATACGGGAGATAGGTGAGGGCATCCCATAGGCAGTAGGTGGAGGGGATTTTACTCTCAAGCCAGCCCAGAAGCTTCGATCCTCGGGGTGTACCAGAGCTGCCCGACGCCGGATACCGAGTCGGCCGCAGACCCCTCATTTCCCCTTCAATAGACCGAAGTTTTGCGCCTCCAAACGGATTATAGGAACGGTTTCTGCGGAGAGGGAGAAACGGGAGACAATGGGCATCCACACGCTCCTTATTGCATGTGCGCTGCTTGgacaatgccccaatacacatccaggctgtgtaaggctgtgtaaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacctgacctcaacccaattgagatggtttgggatgagtgggaccgcagagtgaaggtaaagcagccaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597754.2 False 4323 mRNA 0.59 9 66864118 66997509
TU327227 True 782 lncRNA 0.53 2 66864447 66866729

Neighbor

gene id symbol gene type direction distance location
LOC110520434 LOC106586623 coding upstream 54422 66800595 ~ 66809696 (+)
LOC110505407 LOC106586622 coding upstream 76676 66783373 ~ 66787442 (+)
LOC110520433 LOC106586620 coding upstream 233977 66562788 ~ 66630141 (+)
LOC118964315 LOC106605670 coding upstream 308567 66554554 ~ 66555551 (+)
LOC110520432 LOC106586618 coding upstream 374699 66477037 ~ 66489419 (+)
LOC118944634 NA coding downstream 57367 67054876 ~ 67058489 (+)
LOC110520438 LOC106586569 coding downstream 151056 67148565 ~ 67151482 (+)
LOC110520439 LOC106586626 coding downstream 172744 67170253 ~ 67173369 (+)
LOC110520441 LOC106586627 coding downstream 179852 67177361 ~ 67223961 (+)
LOC110520444 LOC106586630 coding downstream 291036 67288545 ~ 67294522 (+)
G288593 NA non-coding upstream 6298 66857550 ~ 66857820 (+)
G288589 NA non-coding upstream 9150 66854630 ~ 66854968 (+)
G288588 NA non-coding upstream 10208 66853658 ~ 66853910 (+)
G288584 NA non-coding upstream 17507 66846370 ~ 66846611 (+)
G288583 NA non-coding upstream 18262 66845511 ~ 66845856 (+)
G288730 NA non-coding downstream 92936 67090445 ~ 67093518 (+)
G288909 NA non-coding downstream 138892 67136401 ~ 67136713 (+)
G288931 NA non-coding downstream 156399 67153908 ~ 67154188 (+)
G288932 NA non-coding downstream 158466 67155975 ~ 67156368 (+)
G288936 NA non-coding downstream 161745 67159254 ~ 67159469 (+)
G288430 NA other upstream 130321 66731286 ~ 66733797 (+)
G288252 NA other upstream 313631 66549822 ~ 66550487 (+)
LOC118964312 LOC106586611 other upstream 827916 66027633 ~ 66036299 (+)
zmym2 LOC106586592 other upstream 1578562 65260200 ~ 65311166 (+)
LOC110520448 LOC106586634 other downstream 400448 67397151 ~ 67409646 (+)
G289116 NA other downstream 477464 67474973 ~ 67478929 (+)
LOC110505416 LOC106586647 other downstream 521817 67519326 ~ 67520162 (+)
G289455 NA other downstream 627844 67625353 ~ 67632210 (+)
G289486 NA other downstream 681353 67678862 ~ 67682122 (+)
G288614 NA non-coding downstream 19225 66885954 ~ 66886174 (+)
G288615 NA non-coding downstream 20573 66887302 ~ 66887507 (+)
G288617 NA non-coding downstream 23184 66889913 ~ 66890172 (+)
G288635 NA non-coding downstream 56003 66922732 ~ 66923011 (+)
G288637 NA non-coding downstream 60144 66926873 ~ 66927184 (+)
G288674 NA other downstream 126442 66993171 ~ 66994131 (+)

Expression


Co-expression Network