rpe (rpe)


Basic Information

Item Value
gene id rpe
gene name rpe
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67020454 ~ 67023408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597756.2
GCCCGCTAAATCTTACAGCCAGCTAAGAAAATATATGAGCTGTGTGGGCAATATAAAGTATTTTTTCAACACAGGAAAATATGTGAAAGTGGTGTCACTTCAGTATGATTTATACGCCATCCAGTGGCAACATTTGGAACAGAAATGATTTTGAAAGCAGCGTTGAACACGGAAGTAGCAAACTCGCACGTTGGAGTACTTCTTGAACTGCAATCGAGCACACAGAGCAGAGACCTTCAACATGTCTTACAGCGCAAAGATAGGCCCGTCCATCCTCAGCAGTGACCTCGCATGCCTGGGCAGTGAATGCGTCCGAATGATGGAGTGCGGAGCTGACTACCTGCACCTCGACGTTATGGACGGTAATTTTGTCCCCAACATCACCTTTGGCCACCCGATGGTGGAGTGCCTAAGGAACTGCGTGGGGCCAGACCCTTTCTTTGACATGCACATGATGGTGTCGAGGCCGGAGCAGTGGGTGAAACCCATGGCAGCAGCAGGAGCTAATCAGTACACGTTCCACCTGGAGACCACTACTAATGCTGGAAACCTCATTAAGGAGATCAGAGAGAGTGGCAtgaaggtggGCCTGGCCATAAAGCCCGGGACCACAGTAGAGGAGTTGGCCCCATGGGCAGGACAGATTGACATGGCACTGGTCATGACTGTGGAGCCTGGCTTTGGAGGCCAGAAGTTCATGGAGGACATGATGCCCAAGGTTAGCTGGCTAAGGAGTCAGTTTCCCTCTCTGGACATTGAGGTGGACGGAGGAGTGGGTCCCTCTACCATCCACAAGTGTGCTGAGGCGGGCGCTAACATGATTGTGTCGGGCAGTGCGGTGGTGAGCAGCGACGACCCTCGCTCTGTCATCACAATGCTGAGGACTGCCGTCTCTGAGGCCATACAGAAACGCTCACTGGACCGTTGACACGCCCCCTGCCTGGCGATCACCACAGTAATTCCTCACACCAGAACGCCATAGCAACATGCTAATACACCCTAAAGTGGGACAGTCAAAAGATGTTTCTCTTTGGTGGTCAGGGAGGGGTGTGGAAGTTGGTGCTCTGCAGACGGGTGTGCTGATGTCACAGTTTGATCCAGTGAAGCTGCGCCCCTGCCCCTCAATACCCCAGAACATCAGAACCAACCCCAAATCCCCACACTCAGCCAGGATCACTACTCAACCAATGATTTACCCACCACCCAGCTTAGGCCTGTGGATAAATTAACACTTTAACGAGAGTGGAACAGTGGTTACGTTGATTGCACACAATAATTGTAAACATTCCTGAATATTTTTTGGAATACTGTTATGTCGAACTAATGATAAAGATATGTCT

Function

symbol description
rpe Predicted to enable metal ion binding activity and ribulose-phosphate 3-epimerase activity. Acts upstream of or within cilium assembly. Predicted to be active in cytosol. Orthologous to several human genes including RPE (ribulose-5-phosphate-3-epimerase).

NR:

description
ribulose-phosphate 3-epimerase

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0004750 ribulose-phosphate 3-epimerase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01783 rpe, RPE; ribulose-phosphate 3-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597756.2 True 1340 mRNA 0.51 6 67020454 67023408

Neighbor

gene id symbol gene type direction distance location
LOC110504514 NA coding downstream 273161 66732237 ~ 66747293 (-)
LOC110520431 LOC106586619 coding downstream 482559 66490468 ~ 66537895 (-)
LOC118944607 LOC106582097 coding downstream 545395 66472339 ~ 66475059 (-)
LOC118964314 NA coding downstream 608081 66400067 ~ 66412373 (-)
LOC110520429 LOC106586615 coding downstream 724567 66268185 ~ 66295887 (-)
LOC110520437 LOC106586625 coding upstream 42949 67066357 ~ 67078648 (-)
LOC110520442 LOC106586628 coding upstream 201453 67224861 ~ 67236245 (-)
LOC110520443 LOC106586629 coding upstream 252321 67275729 ~ 67286960 (-)
LOC110520451 LOC106586637 coding upstream 501193 67524601 ~ 67542329 (-)
LOC110520452 LOC106586638 coding upstream 522189 67545597 ~ 67568698 (-)
G288828 NA non-coding downstream 12915 67007267 ~ 67007539 (-)
G288824 NA non-coding downstream 26323 66993001 ~ 66994131 (-)
G288781 NA non-coding downstream 93105 66927068 ~ 66927349 (-)
G288780 NA non-coding downstream 93952 66926276 ~ 66926502 (-)
G288777 NA non-coding downstream 98015 66921697 ~ 66922439 (-)
G289187 NA non-coding upstream 173958 67197366 ~ 67197865 (-)
G289197 NA non-coding upstream 182363 67205771 ~ 67205978 (-)
G289199 NA non-coding upstream 184725 67208133 ~ 67208438 (-)
G289205 NA non-coding upstream 188570 67211978 ~ 67212188 (-)
G289231 NA non-coding upstream 239055 67262463 ~ 67262828 (-)
G288578 NA other downstream 177573 66842671 ~ 66842881 (-)
G287112 NA other downstream 1439959 65579791 ~ 65580495 (-)
G287042 NA other downstream 1573171 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 1720037 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 1784546 65235180 ~ 65235908 (-)
G289678 NA other upstream 603424 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 860344 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 1183182 68206330 ~ 68208674 (-)
G290542 NA other upstream 1555695 68579103 ~ 68580707 (-)
G290567 NA other upstream 1602924 68626332 ~ 68647620 (-)

Expression


Co-expression Network