LOC110520438 (LOC106586569)


Basic Information

Item Value
gene id LOC110520438
gene name LOC106586569
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67148565 ~ 67151482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597759.2
GTCTTTATTGTGGTTGCTGTAAAGCAGACCATAGtcataataataatcatcatcatcaacatcatggGGCAACTGAAGCGAGGATCTCTATATTTATTTGTGCTTCTCTGTTTGGGCTGGGTTTGTGAAGCACATTGGAACTCACAGAGAGGGCCTGCTAGACAACCGGTATCATTGAACTATGATGATGTGTCACCAACTAAACCTGAGCTTAGGGAGCAAGTCCCGGCCCAAACTAGGCCCCAGGTCACAGCCCGGCCTCCTGATCCCCAGTCTGTTGTGAAGGTGTTGTTGACCCCTCCAGAGCTTGTCAGGAGTGTGGGGGCCCGCTGTGGGGAGAGCAGGGTGCGGGTAGAGGCCAAACTGGACCTGTTTGGGACGGGCCAGCTAGTGAAGGCGGAGGATGTCTCCCTGGGAGGTTGCGTCTCCACGGAGTTGGACCTCTCAGCCCAGGTCCTGCTGTTTGAGTCGGAGCTGCACACCTGTGGAAGTGTGCTGAAGATGACAGAGGACTACCTTGTCTATGCCTTCACCCTGATCTACACCCCAACACCGGAAGGTGTCAATTCCATTGTCAGAACCAATGATGCCACAGTCTGCATTGAGTGCCACTATCTGAGGAGACTCAATGTGAGCAGCAATGCCCTGAGGCCCACCTGGCTTCCCTATAGTGCTACCAAAGTAGCTGAGGACTCCCTGACCTTTACCCTCGCACTCATGAATGACGACTGGAAGTATGAGCGGTCATCTAATGTCTACTTCCTGGGAGACATTATTCATCTGGTGGCGTCTGTGCAGCAGTATCACCATGTGCCCATGCGTGTGTTTGTGGACAGCTGTGTGGCCACCCTGGTCCCTGACACCAACTCTGCTCCCAAATATGACTTTATCCAGAACCATGGGTGTGTAACTGATGCCCTGCAGACAGGCTCTGTCTCCCAGTTCCTGGTCCGCTCTCAGCTAGACAGACTCCACCTCCAGCTAGAGGCCTTCCGCTTCCAGCAGCAGACCAGCCCCAATATCTACATCACCTGTAGCCTGAAGGCCTCTGTAGCAACTGCTCCCCTAGACATGGAGCACAAGGCCTGCTCCTTCTCTTCAGGATCCAACCGCTGGGTAGGAGCTGACGGGGATGATGCGGTGTGTGGCTGCTGTCAGACTTCCTGTGgcaagaggaaggggaggagtctGCCCTCTGATACAGATGTAGTGTGGGAAGAGGATGCTATGCTGGGGCCAATCCTTATCCAAGACACCTACGTGAAATGGGACCAGGAAGTACATGCTGGAGAGCAGCAAGTGCAGGCTGAAGCACAGCACTCTCATATGTTGGCTGAGGATCCATCTGAAGCGGGTGTCTCTGCAGAGGCAGTTGTGGTGGGATTGGTGATGGTGTTGGTCCTTCTCTGTGTGGGCATTCTGGTAACTGTCCTGTACATGAGGAACAAGTCCAATACCTACTCCAGTGATTTACCCACAACCTTTAACTGAAATTAATAATAAACATGGCAGCAATGCATTTTATCTACCTA

Function

NR:

description
zona pellucida sperm-binding protein 3-like

GO: NA

KEGG:

id description
K19928 ZP3; zona pellucida sperm-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597759.2 True 1532 mRNA 0.52 9 67148565 67151482

Neighbor

gene id symbol gene type direction distance location
LOC118944634 NA coding upstream 90076 67054876 ~ 67058489 (+)
LOC110520435 LOC106586624 coding upstream 151056 66864118 ~ 66997509 (+)
LOC110520434 LOC106586623 coding upstream 338869 66800595 ~ 66809696 (+)
LOC110505407 LOC106586622 coding upstream 361123 66783373 ~ 66787442 (+)
LOC110520433 LOC106586620 coding upstream 518424 66562788 ~ 66630141 (+)
LOC110520439 LOC106586626 coding downstream 18771 67170253 ~ 67173369 (+)
LOC110520441 LOC106586627 coding downstream 25879 67177361 ~ 67223961 (+)
LOC110520444 LOC106586630 coding downstream 137063 67288545 ~ 67294522 (+)
LOC110520445 LOC106586631 coding downstream 151891 67303373 ~ 67309102 (+)
LOC110520446 LOC106586632 coding downstream 157815 67309297 ~ 67362976 (+)
G288909 NA non-coding upstream 11852 67136401 ~ 67136713 (+)
G288730 NA non-coding upstream 55047 67090445 ~ 67093518 (+)
G288637 NA non-coding upstream 221381 66926873 ~ 66927184 (+)
G288635 NA non-coding upstream 225554 66922732 ~ 66923011 (+)
G288617 NA non-coding upstream 258393 66889913 ~ 66890172 (+)
G288931 NA non-coding downstream 2426 67153908 ~ 67154188 (+)
G288932 NA non-coding downstream 4493 67155975 ~ 67156368 (+)
G288936 NA non-coding downstream 7772 67159254 ~ 67159469 (+)
G288941 NA non-coding downstream 9934 67161416 ~ 67161726 (+)
G288674 NA other upstream 154434 66993171 ~ 66994131 (+)
G288430 NA other upstream 414768 66731286 ~ 66733797 (+)
G288252 NA other upstream 598078 66549822 ~ 66550487 (+)
LOC118964312 LOC106586611 other upstream 1112363 66027633 ~ 66036299 (+)
LOC110520448 LOC106586634 other downstream 246475 67397151 ~ 67409646 (+)
G289116 NA other downstream 323491 67474973 ~ 67478929 (+)
LOC110505416 LOC106586647 other downstream 367844 67519326 ~ 67520162 (+)
G289455 NA other downstream 473871 67625353 ~ 67632210 (+)
G289486 NA other downstream 527380 67678862 ~ 67682122 (+)

Expression

LOC110520438(LOC106586569) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC110520438(LOC106586569) Expression in each Bioproject

Bar chart with 10 bars.
LOC110520438(LOC106586569) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network