LOC110520442 (LOC106586628)


Basic Information

Item Value
gene id LOC110520442
gene name LOC106586628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67224861 ~ 67236245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597762.2
CCTGTCAGGGCTGTTCTTTCCCTTTGTcttggcaggagagagggagcaaaacggggagagagagggtctctGGTTCCTGAACAAGCGTTAGGCATCAGAGGGCGGCTTGGAAGGAAACTCAAGGAGATTTGTACTATAATTGAAGGGCAACCTGTTATTCTCCACCTGTCTTTCTATTGTTGTTTTAAaaattattttaacattttgGAGAGTTTGTTTTCTGTCCTAAGCCTAAGCGCTCTTGTAGAGGTCGTAACTGGTGAAGGTTACTCTGTGATTCTCTGGGTGCCTGGTCGTTCCTAACTCAGACCATGCGTTCTCTGTGGCTGCTTCTGATCCTgtgcctgtccctgtccctggcgCCCCTCGTCCAGACCGAGAAGGGCCTGGAGTTCCCTCGCTATGACGGAAACGACAGGGTCATCAACATCAATGACAAGAACTACAAGAAGGCTATGAAGAAGTACAGCATTCTCTGTCTGCTGTACCACAAACCCATCCCTGACGGCAAGGAGCTGCAGAAACAACACCAGATGACTGAGATGGTGCTGGAGCTTGCTGCCCAGGTTATGGAGGAAAAGGAGATTGGGTTTGGAATGGTTGACTCCCACGAAGACGTCAAGGTTGCCAAGAAGCTGGGCCTGGTGGAAGAGGGAAGTGTGTACGTGTTCAAGGGAGACCGTATGATTGAGTTTGATGGCCTGCTCTCTGCAGACACCCTGGTGGAGTTCCTACTAGACctgttGGAGGAGCCCGTGGAGGTGATAGGAAATACTCTGGAGCTGAGGGCCTTTGACAGGATGGAGGAAGACATCCGTCTTATTGGCTACTTCAAAAATGACGAATCAGAATACTACCATGCATTCAAGGAGGCTGCAGAGCAGTTCCAGCCCTACATCAGATTCTTCGCTACCTTTGAGAAATCTGTGGCCAAGGAGCTGACCCTGAAGATGAACGAGGTGGATTTCTACGAGCCCTTCATGGAGGAGCCTGTCACTGTCCCTGACAGGCCTAACTCTGAGGAGGAGATCGTGGCCTTCGTCACTGAACACAGGAGACCAACACTGAGAAAACTGCGTGCTGAGGACATGTTTGAGACCTGGGAGGACGATTTGGAGGGGATCCATGTGGTGGCCTTCGCAGAGGAGGAGGACCCTGATGGTTATGAGTTCCTGGAGCTGTTGAAGGAGGTGGCCAGAGACAATACCCACCACCCTGGTCTCAGCATCATCTGGATCGACCCTGATGACTTCCCCCTGCTGATCCCCTACTGGGAGAAGACCTTCCACGTGGACCTGTTCAAGCCTCAGATCGGAGTGGTCAACGTTACTGATGCTGACAGCATCTGGCTGGAGATAGACGAACAGGACCTGCCCACAGCCCAGGAGCTGGAGGATTGGATAGAGGACGTCCTGTCTGGCAAGGTCAACAccgaggatgatgatgatgatgacaacgATGATGATGACGAAGATGACGAAGACGataacgatgatgatgatgaagatgacgaCGAAGATGATGACGATGATAACGATGATGACGAAGATGATAACGATGATGACGACGACgaagatgatgacgatgatgaatAATTAAAAAACTACAAATTTGTAATCCAAAATTCATAACATTGTTGTATAGTCTCTTCACTGTACTATCATCAAAGTGAACGAGTtcagggagagaggaatagatcTATATGCTTTTATAAAATATTTTGTACAATGTGTACATCACTAGCCAAAATCAACCTTTCTGCATTAGAAGAAAACCCATCAACAGATTTTGTTTTTCAAGAATCTGATAAAAATACTGTAGATAAACTGAAATCTATCTGAAAGAGAGAAGTAACAAACAGAGATACTTCAGAAAACCCCAAACAGTACTTTCCATCCTTCCCTTAATTCTACTAATTTATAACAATGACTGGCAACCACGACAAATACATCAATCTAACTTTAGTTTGATCAATGAAGTGCTGCTGTACACCATCCTAAACCTCACTGAAGTCACTGAAAAGGTTGGCATCTTTGTGTGCTTTTCTGTGCCCTCTATTATATACTCTGTGTGTAGATAATTGCATTTTAGGTTCTACTTCCTGGATTCAGTGCAAATACacacctgtctctccctttcccagGGGCTAGATCTTTGTTATTACTATTGACACTTTCCAATTTCCACAACActttctctcctttcatctcctcctcctctccatctctgtattCATGTGTGTTTGAGTATGCAACAGCTGCAAAGTGAGATAATATCAGCATTACACACCCAGATGGGAGAGGAAAGCCTATTTAAATGCAAATTCCTCAAGTCTCAATTTCTCTAATAtattctctctccatgtttcgTTCTCttca

Function

NR:

description
calsequestrin-2-like

GO: NA

KEGG:

id description
K23468 CASQ1; calsequestrin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597762.2 True 2378 mRNA 0.46 11 67224861 67236245

Neighbor

gene id symbol gene type direction distance location
LOC110520437 LOC106586625 coding downstream 146213 67066357 ~ 67078648 (-)
rpe rpe coding downstream 201453 67020454 ~ 67023408 (-)
LOC110504514 NA coding downstream 477568 66732237 ~ 66747293 (-)
LOC110520431 LOC106586619 coding downstream 686966 66490468 ~ 66537895 (-)
LOC118944607 LOC106582097 coding downstream 749802 66472339 ~ 66475059 (-)
LOC110520443 LOC106586629 coding upstream 39484 67275729 ~ 67286960 (-)
LOC110520451 LOC106586637 coding upstream 288356 67524601 ~ 67542329 (-)
LOC110520452 LOC106586638 coding upstream 309352 67545597 ~ 67568698 (-)
LOC110520453 LOC106586647 coding upstream 381245 67617490 ~ 67636658 (-)
LOC110520454 LOC106586643 coding upstream 448805 67685050 ~ 67706221 (-)
G289205 NA non-coding downstream 12673 67211978 ~ 67212188 (-)
G289199 NA non-coding downstream 16423 67208133 ~ 67208438 (-)
G289197 NA non-coding downstream 18883 67205771 ~ 67205978 (-)
G289187 NA non-coding downstream 26996 67197366 ~ 67197865 (-)
G288828 NA non-coding downstream 217322 67007267 ~ 67007539 (-)
G289231 NA non-coding upstream 26218 67262463 ~ 67262828 (-)
G289200 LOC106586630 non-coding upstream 52378 67288623 ~ 67294508 (-)
G289308 NA non-coding upstream 148157 67384402 ~ 67384606 (-)
G289310 NA non-coding upstream 149581 67385826 ~ 67386139 (-)
G289311 NA non-coding upstream 150303 67386548 ~ 67386770 (-)
G288578 NA other downstream 381980 66842671 ~ 66842881 (-)
G287112 NA other downstream 1644366 65579791 ~ 65580495 (-)
G287042 NA other downstream 1777578 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 1924444 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 1988953 65235180 ~ 65235908 (-)
G289678 NA other upstream 390587 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 647507 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 970345 68206330 ~ 68208674 (-)
G290542 NA other upstream 1342858 68579103 ~ 68580707 (-)
G290567 NA other upstream 1390087 68626332 ~ 68647620 (-)

Expression


Co-expression Network