LOC110520443 (LOC106586629)


Basic Information

Item Value
gene id LOC110520443
gene name LOC106586629
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67275729 ~ 67286960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597764.2
GAAGCGGAGTCGATGCTTATAAAGCCTAGCCTACCTTGTCCTATTCAGTCACCTGTGTGCTATTACACTTAACTGCTCGAGAACAGAGCATACGGGAGGACAAAATACGAATTATCGCTACATCGGAAGGACTGACGCCGGGAAGATACACATATCTACTGTCGCTAGAGAAGCAGGCTCACAGTCAAATCCTCAACTTGTGGATTGATGTAGTCAGTAGCTACAATATAGCGTAATGGGAATGGAATGTAAATTCTAGGCTATACTAGACTGGAGGCCTGCAGCATCCTCCTTTAAAACTGGAGCGTCCTCAGTGCTGGTAGATTCTCCTccgaacacacacacccctagtGAATTTGACCAGATGGTGGATACTACAGCGTCCATGTAGACAGCAAACCAAAGGATAGTGTTTTTATTGCCCTTCTGTTACTTTAAACCTTGACTTTTCAGTTTTTCTTCACTTTTGAACGAGTAGTTCTGTTTAGCACTTGCAATGAGTATGGGTACAGGTGTCATGGAGGCAGCGGACATAGCTGTGGTGGCTCTGTACTTCATCCTGGTGCTGGGCATCGGGTTCTTCGCCATGTGGAAGGCCAACCGCAGCACAGTGAGTGGATACTTCCTGGCGGGACGCTCCATGACATGGGTGGTGATCGGAGCGTCGCTGTTTGTCAGTAACATTGGCAGTGAACACTTCATAGGCCTGGCGGGGTCGGGAGCAGCCAGTGGCTTTGCTGTGGGAGCATGGGAGTTTAACGCTCTTCTCCTGCTGCAGCTGCTGGGCTGGGTGTTCATACCTGTGTATATCCACTCTGGGGTGTACACAATGCCGGAGTACCTCTCCAAACGCTACGGAGGCAATAGGCTAAAGGTGTACTTTGCTGCCCTTTCTGTGCTGCTCTATATCTTCACCAAGATCTCTGTGGACTTATACGCCGGGGCGCTTTTCATCCAGGAGTCGTTGGGCTGGAACCTCTATCTGTCCATCATCCTGCTCATCAGTATGACCGCAGTGCTTACAGTCACTGGTGGCCTGGTCGCAGTCATGTACACGGACACCCTCCAGGCCGTGCTGATGATCGGTGGAGCGCTCAGCCTGACCATCATCAGCCTGATCAAGGTCGGCGGTCTTGAAGGGGTTCGGACCAAGTACATGCTAGCTGTCCCAAATGTAACAGCTATCCTGGCCAGTGGGAACTTCACCTACTCGGCTTCCTGCCGCATTGAGCCCAAGCCAGATTCCCTGCGGCTCCTCCGGGGTCCGCTGGATGAGGATATCCCCTGGCCTGGCTTTCTTCTGGGCCAAACCCCAGCCTCCATCTGGTACTGGTGTGCCGACCAGGTCATCGTCCAGAGGGTGCTGGCTGCTAAGAACATTGCCCATGCCAAGGGCTCCACgctgatggctggcttcctgaaGGTCCTGCCCATGTTCATTATCGTCATCCCTGGGATGATCTCCCGGATCCTGTTTGCGGATGAGATTGCCTGCATCGGGCCAGAGCACTGCCTGGCTGTTTGCGGCTCTAAGGCGGGTTGCTCCAATATCGCGTATCCGCGGCTTGTCATGTCAGTGATGCCCATGGGATTGCGAGGGCTGATGATGGCTGTGATGATTGCAGCTCTCATGAGTGATCTGGACTCCATCTTTAACAGTGCTAGCACCATCTTCACCCTGGACATCTACCAGAGCGCAAGGCGTAGTGCATCCCAAAAAGAGCTACTGTTGGTGGGCCGGCTGTTCGTGGTGTTCATGGTGGTCATCAGTATCGCCTGGATCCCTGTCATCATCGAGATGCAGGGTGGCCAGATGTATctctacatacaggaagtagctGGATACCTCACCCCGCCCATCGCCGCCCTCTTCATGCTGGGCGTGTTCTGGAAGCGTTGCAATGAAAGAGGTGCATTCTGGGGCGGTATGACCGGATTCGTGCTGGGCACCACCCGGCTGATTCTGGCGTTTATTTATCGCGAGCCTCCCTGTGACCAGCCAGACGACAGGCCTTTCTTCATCACACATGTCCACTACATGTATGTGGCTGCTGGGCTGTTCTGGGTATCTGGACTGGTGGCTGTGGTCGTCAGTCTCTGCACCCCTCCTCCGGATGAGGAGCAGATTCGCACCACCACATTATGGGGCCTGCGTAACATTGGAAAGCTTCCCCCCAAAGACCGTGAGGAGATGTACAAGCTGACAGATAAGAGCCCTGTGCAGTTGAATGGGAATGGAGACCTCTATAAGGATCTGCCCCCAGACATTTGTAGAGCTAGGTGTCTAGAGGGGGAGGACGTCACGTTGCTAACGCCGCCTAATGACCATGAACCCGCGACCCCCAGCTCAGAGACAACCCCAGGAACGACTCCAGCAACGCCCACCAACCAGTTTGATAATAGTCACGCAGGGCTCATGCATGCAGAGGAAGGTTGTTgtggggagggtgggaggggcATGCATCTGTTGGAGTGGTTCTGTGGGTTTAAAGAAGCAGCATACAATGCCCATCCCAAAAGGAcagaagagaatgagagagccaTCATAGAGATGCTGTATGAGCCACCCAGAACCAAACTGCTGCTCAACAGTGGGCTGTTTCTGGTCTGCTCGTTGGGAATATTCCTGTTTGTCTACTTCTCTCTATAG

Function

NR:

description
sodium/myo-inositol cotransporter-like

GO: NA

KEGG:

id description
K14383 SLC5A3, SMIT; solute carrier family 5 (sodium/myo-inositol cotransporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597764.2 True 2650 mRNA 0.53 2 67275729 67286960

Neighbor

gene id symbol gene type direction distance location
LOC110520442 LOC106586628 coding downstream 39484 67224861 ~ 67236245 (-)
LOC110520437 LOC106586625 coding downstream 197081 67066357 ~ 67078648 (-)
rpe rpe coding downstream 252321 67020454 ~ 67023408 (-)
LOC110504514 NA coding downstream 528436 66732237 ~ 66747293 (-)
LOC110520431 LOC106586619 coding downstream 737834 66490468 ~ 66537895 (-)
LOC110520451 LOC106586637 coding upstream 237641 67524601 ~ 67542329 (-)
LOC110520452 LOC106586638 coding upstream 258637 67545597 ~ 67568698 (-)
LOC110520453 LOC106586647 coding upstream 330530 67617490 ~ 67636658 (-)
LOC110520454 LOC106586643 coding upstream 398090 67685050 ~ 67706221 (-)
LOC118944713 LOC106592868 coding upstream 489451 67776411 ~ 67786849 (-)
G289231 NA non-coding downstream 12901 67262463 ~ 67262828 (-)
G289205 NA non-coding downstream 63541 67211978 ~ 67212188 (-)
G289199 NA non-coding downstream 67291 67208133 ~ 67208438 (-)
G289197 NA non-coding downstream 69751 67205771 ~ 67205978 (-)
G289187 NA non-coding downstream 77864 67197366 ~ 67197865 (-)
G289200 LOC106586630 non-coding upstream 1663 67288623 ~ 67294508 (-)
G289308 NA non-coding upstream 97442 67384402 ~ 67384606 (-)
G289310 NA non-coding upstream 98866 67385826 ~ 67386139 (-)
G289311 NA non-coding upstream 99588 67386548 ~ 67386770 (-)
G289312 NA non-coding upstream 100667 67387627 ~ 67388044 (-)
G288578 NA other downstream 432848 66842671 ~ 66842881 (-)
G287112 NA other downstream 1695234 65579791 ~ 65580495 (-)
G287042 NA other downstream 1828446 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 1975312 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 2039821 65235180 ~ 65235908 (-)
G289678 NA other upstream 339872 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 596792 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 919630 68206330 ~ 68208674 (-)
G290542 NA other upstream 1292143 68579103 ~ 68580707 (-)
G290567 NA other upstream 1339372 68626332 ~ 68647620 (-)

Expression


Co-expression Network