LOC110520452 (LOC106586638)


Basic Information

Item Value
gene id LOC110520452
gene name LOC106586638
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67545597 ~ 67568698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597780.2
TAGCAATGCAGTTTGCTAGCCATTTCATCTCTAAGGAATACAGCCTGGCTGCTCTCCAGCCTAGGTCAACTCAATGTCCATGTATGTATAAACGGCTGTAAATACCAGCCAagattctacctctactatattGGACCACAGGTTGTCCACatcactctgtgtgtctctcttgttATTTCCTGATCCactctctgtctataggctgctCCACTACAGGTCCCTATGGTAAGAGTTAAGTCATGACACCCACTTTTCCAATCCTCTGTAGCCCTCCGTTTACAGTGTGTTCACTAAATGAAGTGCAACCTCACTCAATGCAAAGTGTGTAGGCCTACTGTCCAACCAcaaccccatccctccatctctaaacATACAGGATTATCTTACTCTCTTTTATTGACAataactctctttctctatatagtACAATACAGACCACAGACTCTCTCCATGCCGACGCAGCCTATTGGCTCATCTGCCTACCTGCTCTGTAACGTCCCCTGTGCTCTGATCAATGTCAAAGAGACGTAGCTGAGTGATGTGCAATACCCAGTGTGCTCAGTGTTACATACCTCATAGCCCATTACTCGGAGACAGATATTATAAACCAATACGACAGCTATGACAGTGTACAGATGATCCATGGTGCTACCAGTGTATTACAGTAAATCCCTATTTATTACTGGGCATCTGGGAATGGAACAATCTCAGATGTGACGACAAAGATGGGAAGATACCAGGTGGTGCTATGTATACATCAGGACAAATGACTGGAACTTCTCTTTTGACTAGTAATAACACATACGTAAAACTTGTCATTTTTGTTAACATATTTTTCAATGCAGTGCATCCCTCCCCATTGTATTTAAACAAAACTGTCTTACCTTCAGCCAACCACTTTCTAAAAAACAATAACTCCTCTCATCCAGCTCCACCACTCCTCCTTTTCCATTCATATCAAATTAGCTCTCTTCTCAACTACGAGTTATTAAGAGGGAGGTTTCCTTTTAAGTGGCTTGTCTTTAGGAAATCATATTGTTTTGGATTGCTTCCTCTGAGAATAAGAACAGGAAGTAAAGTAAAGGAGGCAGACACTGAGACCGCTCGGGCCTACTCCAACCGATTGAGATATCCGCTCTGTCCCCGTTTCTCAGTGTAGCTAAGATTCCGTTCCCACCACTCTACTgccggtgtgtatgtgtgtttgtccagacagactgacagactaaTAATTGCTCCAGTGACAGGTCTGTGCCCCCGGTGGCCGTGCTTCTACCTCTCACCCCTCTTACCCTCCTCTGACTGACCATGCCAACTCTGTCTGGGaacaaaaaataattaaaataaagtCTGAGAAATAAACATAGTCAGAAATATCAAGAGTGACTCTTAAGGGTGCGGGTCTAAAGCTTACTGGAATGCTCAAGACACAGAATGAAGAACAATAACAAAAGACGACCTCACCACTTTGAGCAAACTTTGTCTGAACATACCATAACTTACTTCAACTAACTAAGCACAACATTAGTCTATAGGAGTCTATGTATACTTCTGACTTCATCATGGTCCTAATAATGTAGCTAATGTTGACCAGCAAGGCTAGACAGCCTGTAGGTTGTGTTGTAAACTTGTGAGGAAACCCGTTGTCAGTCCAGCCTGGTAGCAACATGACTGTTTTAACTCCTACCTCCTGCTATTGTTAAGGCCAGGCTCTCACTCCCTTCCTCTTGTCTAGGCTAGCTACACCTGTTTTTTTGTGGCTTGCTGTACACACATTATCTAATGCCAAGAAAGCATTATAGCTAGCCAAAGCTGTGTTGATTTGATAGTTGGATATTGAGAGTTTTTTTAAAGACCCTGTGGCGAATTCAATTACTTTGCGAGCATTTAGGGAGCATGGAATTTAAGGGTTCTAGCTTAGCTAACTCTCCTACATATCAGTTCTGAGCTCAAGGCATGGATGGACACCGCTAACATTTCCCCTCTCCTGTTCTCATAGTGGTGCTTTTTCCAGTGTTCCAGTCTCATTgaacctctcccctcccctcccctcctcacccctctcccctccctgaaACGCAATCCGCCTGGGGGGATAAGAGCACTGACTCTGCTTGGAGCACCACCCGGTTTCCATCCTGCTGCCATAAACCAGGGAGAGAGAACTGCAAAACGTCTCATGGTCATGGTCACTTcacagggagggtgagagaggcagATAAGATGGAGCCAGTGTCCTACTCAACGTTCAGTCTTAATCATGTTCTAAGAGAATTTCAACTAACATTTCAAACCAGCTTTATGGATAACTATCAATGGGATATGACACACACGgtGTGCCAGTGACCAGTGACGAGTGAACAGACATGGGGGACTGGAGTCTTCTGGGGAACTTCCTGGAGGAAGTTCAGGAACATTCCACGTCGGTGGGGAAGGTGTGGCTCACCGTCCTCTTCATCTTCAGGATCCTGGTGCTGGGCACAGCCGCTGAGTCCTCATGGGGAGACGAACAGAGTGACTTCCTGTGCGACACCCAGCAGCCTGGTTGTACCAACGTCTGTTATGACCGGGCGTTTCCTATCGCACACATCCGCTACTGGGTCCTACAGATCGTCTTCGTGTCCACACCATCACTGATCTACATGGGTCACGCCATGCACATAGTGCGGAGGGATGAGAAACGAAAAAGGAGGGAGCAGGAGAAgacagaggggatggaggaggaggaggagaagggagagggggggagcgtATCGGGGGAGAAGGTGTATCTCCAGCAGAGGGATTGTGGGAAGGTGCTGGAGGCATCTGGGCGAGTTCGCCTGCGGGGGGCGCTGTTATCCACGTACATTCTGAGCATCCTGATCCGCACTGTGATGGAGGTGATCTTCATCGTGGTCCAGTACATGATCTATGGAGTCTTCCTCAGGGCTCTGTACCACTGCAAGGCCTGGCCCTGCCCCAACCCAGTCAACTGCTACATGTCCCGGCCAACAGAAAAGAACGTATTCATCGTCTTCATGCTGGTGGTGGcaggtgtctccctcctcctctctgtggtcGAGCTCTACCACCTGGCCTACAGGCGGTACAGGAAGTGCAGACGCACTCGTGCCTCCCTCAAAAACACCACTCATAATGCTGTGGCAATCCCCTTCACCAGGGACGCCGACAACCCAACCAGTCACAACTCCCCAGGCTGCACCCCTCCCCCTGACTTCCGCCAGTGCTTGGTGTTGTCGGGGACAATGACCCCCTTGGCCCCTGTGAACCCCATGAACTCCATGCCTCCTCACCCcttcaacaacagaatggcgcACCAGCAGAACTCCGTCAACATGGCCACCGAGCGTCACCATTCCCATGACGacctggagggagagggaggtttCCTGAGGATGAACTACACCCAGGTGCCAGGGGAGATGCCCAGCGGGTGCTCTGCGCCACCCTTACTGCATACCGCGTACCTGAAGGACAAACAGAGTCTCAGTAAGATCAGCAGCACCAGCAGCCGGGTTCGACCAGACGACCTGGCCGTGTAGAaccagacagacggagagagagagacagagaggggcttagaaggtgtggagggagaggactttcagacacacagagagagaaatgccCTGCTTAGAGGAGAGTGGAGCAGGCTGGGTCTATATACCCagccagagacagagaaggggagcAGGCAAGGCAGACACGGGGGCTAAAGATGGATGTGTTAGCAAACTCCAAGTGAAGGGCTCCATTCAGCCCAAATCTGGGGAAACTGTGGAAGATTGCCTGGCCTAGGACTCCATGAGCACTACAGGAAGAAAGACATTGGGATCTGTAAGCTCCCTGGGAGTGGGTTGAATGGATCTTGAGAACTTCTGCATATTGGACTGAGCTTTGAGACTGTGACCGTTGGTGCTGGGAGAACTGGTTGTTTTTGTTAGAGCAACAAGTGGTTGGCCAAGCTTGAAACGTGGACTTTCATAACGTTGATCAAATATTGACATGGAAGCAAAATATAAATATACCTTTTAAATCACTGTGTGgaaaaagccttcaaataaataACAGATAATTGCATTGTATGTTTTTGATGTTTTAAAGTACCTTTAAAGTCTGAGAATATTGTACTTTAAACTTGCACATTCACTATGCTAAAAACTGTCCCACTGTCTGTCCAGCTGCCCATTATAATAACACAAACATTTACAAGCTTGCAAATGTAAACACgcatgcacaaaaacacacacatgcacacactgctGTCATAGGAGGACAATACCCTATCCTCAGGGGTCTGACCAAACAGTGTTGCCCCGATCCCTGGCATCCAGTGACGGAGGTTATTTGCAGCTGTCATGTTGTTTGGAAAGTGAAATTGTGACACACATCCCTGCAATGGAATCCATTGTGCATTATATCACCTTCAAATATAGCAGGAGCAACTGTTTTCTATGTGTTTAATCCTGATGGCATACAAACAGAAACAAGGGACAGCTGTGCCAAAATAACTGATTTCTCTCCATTCAACAGACGCTTAGACCAATAATTACAGAGGGTTGTATGCACTCAGGTACAAATAATGAAGAGCTATGCAAAAGTGCCTACAAAATGTGAATCTGCAAAATGTTCAAAGTCAAAGTCTTTTAGCTCCATATTAGATGTGTAAACATGTCCTGATATCATTTAAAAGTGTGTTCAAGagccatatacagtatgtatacaaATAATTGACCTTCAATCGAGGTACAAGTTTGAAAAGTTGATCATCCTTCAGTATATTTCAGCGTTTCTTTTTTGTTAACCACTAGGTGGAGAAATTTCCCCTTGAACCTTTCAAATACAGTGTAGTTCATTCATTGTGACTGTGCAACTGTTGATTGTCACATTAGTAGCTATCCACCTCTCTTCCATATCTTTTCATCCTTGtttaaatttgatttatttttgttTAACTGTGTGAGGCTGGTCAGAAAATGACATGTCTAGGCCTATAGGCTAATAGAGAAGGCATAACCACAATCTGTGAAGTTCTCAACTGATTTTGCACTAGACTAGGCCTTGTGGGGTTTGGAATATAAAGACCCCTTTGTAATTACATGAATCATATTTTCTTTTTCTATAGAGAGCAACAACCAGTAATTTACAGTAATAGTATTTTGGAATGCCAAGAAATGGGTGACTGGTTGACGTTTCTCTGTGCACATTTCAATGTCATTGTGTTTTTGTAAAGTCTGCAATAAAACGAATATGTCAAATAAA
>XM_021597779.2
CTCTACTCAGATCTTATCCTATCTACTCTACTCAGATCCTATTCTATCTACTCTATTCAGATCCTATCTACTCTACTCAGATCCTATCCTATCTACTCGACTCAGATCCTATCCTATCTACTCTACTCAGATCCTATCCTATCTACTCAACTCAGATCCTATCCTATCTACTCTAATCTACTCAGATCCTACTATACTCTGCACAGATCTTACTCTACACTACTTTACCCAGCTCCTTTTGATGACATCTGATGCTGTCTGCAAGAGGTACGACTCAGCATCACTGACCTCCACCAACCTCTGTCCTCCAAGCCAGCACATCTCCACTCATCCGACCAGGTCACCACTCCTCTACGTCCCGgtcccatcctccatcctccactcCATCCATCTCTGAGGGGAAGACATTGCTAAGAAGCAGCTCCAAGGACCCTCTTCCTCAGTGTTGACAGCCATCACCATCTGCAGCAAGAACAGgtGTGCCAGTGACCAGTGACGAGTGAACAGACATGGGGGACTGGAGTCTTCTGGGGAACTTCCTGGAGGAAGTTCAGGAACATTCCACGTCGGTGGGGAAGGTGTGGCTCACCGTCCTCTTCATCTTCAGGATCCTGGTGCTGGGCACAGCCGCTGAGTCCTCATGGGGAGACGAACAGAGTGACTTCCTGTGCGACACCCAGCAGCCTGGTTGTACCAACGTCTGTTATGACCGGGCGTTTCCTATCGCACACATCCGCTACTGGGTCCTACAGATCGTCTTCGTGTCCACACCATCACTGATCTACATGGGTCACGCCATGCACATAGTGCGGAGGGATGAGAAACGAAAAAGGAGGGAGCAGGAGAAgacagaggggatggaggaggaggaggagaagggagagggggggagcgtATCGGGGGAGAAGGTGTATCTCCAGCAGAGGGATTGTGGGAAGGTGCTGGAGGCATCTGGGCGAGTTCGCCTGCGGGGGGCGCTGTTATCCACGTACATTCTGAGCATCCTGATCCGCACTGTGATGGAGGTGATCTTCATCGTGGTCCAGTACATGATCTATGGAGTCTTCCTCAGGGCTCTGTACCACTGCAAGGCCTGGCCCTGCCCCAACCCAGTCAACTGCTACATGTCCCGGCCAACAGAAAAGAACGTATTCATCGTCTTCATGCTGGTGGTGGcaggtgtctccctcctcctctctgtggtcGAGCTCTACCACCTGGCCTACAGGCGGTACAGGAAGTGCAGACGCACTCGTGCCTCCCTCAAAAACACCACTCATAATGCTGTGGCAATCCCCTTCACCAGGGACGCCGACAACCCAACCAGTCACAACTCCCCAGGCTGCACCCCTCCCCCTGACTTCCGCCAGTGCTTGGTGTTGTCGGGGACAATGACCCCCTTGGCCCCTGTGAACCCCATGAACTCCATGCCTCCTCACCCcttcaacaacagaatggcgcACCAGCAGAACTCCGTCAACATGGCCACCGAGCGTCACCATTCCCATGACGacctggagggagagggaggtttCCTGAGGATGAACTACACCCAGGTGCCAGGGGAGATGCCCAGCGGGTGCTCTGCGCCACCCTTACTGCATACCGCGTACCTGAAGGACAAACAGAGTCTCAGTAAGATCAGCAGCACCAGCAGCCGGGTTCGACCAGACGACCTGGCCGTGTAGAaccagacagacggagagagagagacagagaggggcttagaaggtgtggagggagaggactttcagacacacagagagagaaatgccCTGCTTAGAGGAGAGTGGAGCAGGCTGGGTCTATATACCCagccagagacagagaaggggagcAGGCAAGGCAGACACGGGGGCTAAAGATGGATGTGTTAGCAAACTCCAAGTGAAGGGCTCCATTCAGCCCAAATCTGGGGAAACTGTGGAAGATTGCCTGGCCTAGGACTCCATGAGCACTACAGGAAGAAAGACATTGGGATCTGTAAGCTCCCTGGGAGTGGGTTGAATGGATCTTGAGAACTTCTGCATATTGGACTGAGCTTTGAGACTGTGACCGTTGGTGCTGGGAGAACTGGTTGTTTTTGTTAGAGCAACAAGTGGTTGGCCAAGCTTGAAACGTGGACTTTCATAACGTTGATCAAATATTGACATGGAAGCAAAATATAAATATACCTTTTAAATCACTGTGTGgaaaaagccttcaaataaataACAGATAATTGCATTGTATGTTTTTGATGTTTTAAAGTACCTTTAAAGTCTGAGAATATTGTACTTTAAACTTGCACATTCACTATGCTAAAAACTGTCCCACTGTCTGTCCAGCTGCCCATTATAATAACACAAACATTTACAAGCTTGCAAATGTAAACACgcatgcacaaaaacacacacatgcacacactgctGTCATAGGAGGACAATACCCTATCCTCAGGGGTCTGACCAAACAGTGTTGCCCCGATCCCTGGCATCCAGTGACGGAGGTTATTTGCAGCTGTCATGTTGTTTGGAAAGTGAAATTGTGACACACATCCCTGCAATGGAATCCATTGTGCATTATATCACCTTCAAATATAGCAGGAGCAACTGTTTTCTATGTGTTTAATCCTGATGGCATACAAACAGAAACAAGGGACAGCTGTGCCAAAATAACTGATTTCTCTCCATTCAACAGACGCTTAGACCAATAATTACAGAGGGTTGTATGCACTCAGGTACAAATAATGAAGAGCTATGCAAAAGTGCCTACAAAATGTGAATCTGCAAAATGTTCAAAGTCAAAGTCTTTTAGCTCCATATTAGATGTGTAAACATGTCCTGATATCATTTAAAAGTGTGTTCAAGagccatatacagtatgtatacaaATAATTGACCTTCAATCGAGGTACAAGTTTGAAAAGTTGATCATCCTTCAGTATATTTCAGCGTTTCTTTTTTGTTAACCACTAGGTGGAGAAATTTCCCCTTGAACCTTTCAAATACAGTGTAGTTCATTCATTGTGACTGTGCAACTGTTGATTGTCACATTAGTAGCTATCCACCTCTCTTCCATATCTTTTCATCCTTGtttaaatttgatttatttttgttTAACTGTGTGAGGCTGGTCAGAAAATGACATGTCTAGGCCTATAGGCTAATAGAGAAGGCATAACCACAATCTGTGAAGTTCTCAACTGATTTTGCACTAGACTAGGCCTTGTGGGGTTTGGAATATAAAGACCCCTTTGTAATTACATGAATCATATTTTCTTTTTCTATAGAGAGCAACAACCAGTAATTTACAGTAATAGTATTTTGGAATGCCAAGAAATGGGTGACTGGTTGACGTTTCTCTGTGCACATTTCAATGTCATTGTGTTTTTGTAAAGTCTGCAATAAAACGAATATGTCAAATAAA

Function

NR:

description
gap junction alpha-5 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597780.2 False 5265 mRNA 0.46 2 67545597 67552019
XM_021597779.2 True 3408 mRNA 0.47 2 67545597 67568698

Neighbor

gene id symbol gene type direction distance location
LOC110520451 LOC106586637 coding downstream 3268 67524601 ~ 67542329 (-)
LOC110520443 LOC106586629 coding downstream 258637 67275729 ~ 67286960 (-)
LOC110520442 LOC106586628 coding downstream 309352 67224861 ~ 67236245 (-)
LOC110520437 LOC106586625 coding downstream 466949 67066357 ~ 67078648 (-)
rpe rpe coding downstream 522189 67020454 ~ 67023408 (-)
LOC110520453 LOC106586647 coding upstream 48792 67617490 ~ 67636658 (-)
LOC110520454 LOC106586643 coding upstream 116352 67685050 ~ 67706221 (-)
LOC118944713 LOC106592868 coding upstream 207713 67776411 ~ 67786849 (-)
LOC110520455 LOC106586642 coding upstream 268007 67836705 ~ 67881418 (-)
LOC110520458 LOC106586647 coding upstream 331658 67900356 ~ 67916858 (-)
G289394 NA non-coding downstream 1364 67543828 ~ 67544233 (-)
G289382 NA non-coding downstream 26345 67518882 ~ 67519252 (-)
G289378 NA non-coding downstream 32442 67512914 ~ 67513155 (-)
G289371 LOC105911894 non-coding downstream 43468 67501613 ~ 67502129 (-)
G289360 NA non-coding downstream 60935 67479189 ~ 67484662 (-)
G289421 NA non-coding upstream 22367 67591065 ~ 67591402 (-)
G289674 NA non-coding upstream 53420 67622118 ~ 67628501 (-)
G289676 NA non-coding upstream 55513 67624211 ~ 67631209 (-)
G289677 NA non-coding upstream 56702 67625400 ~ 67631812 (-)
G289652 NA non-coding upstream 110164 67678862 ~ 67680167 (-)
G288578 NA other downstream 702716 66842671 ~ 66842881 (-)
G287112 NA other downstream 1965102 65579791 ~ 65580495 (-)
G287042 NA other downstream 2098314 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 2245180 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 2309689 65235180 ~ 65235908 (-)
G289678 NA other upstream 58134 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 315054 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 637892 68206330 ~ 68208674 (-)
G290542 NA other upstream 1010405 68579103 ~ 68580707 (-)
G290567 NA other upstream 1057634 68626332 ~ 68647620 (-)

Expression


Co-expression Network