LOC110520453 (LOC106586647)


Basic Information

Item Value
gene id LOC110520453
gene name LOC106586647
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67617490 ~ 67636658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597782.2
TGCTTCTCTCTCAAACGACCActtcctctgttctccctcctcagACTAACGATATGTGAAACTGATCTCTGGCTCTAAAGTTCCACTCCACTCtgtacatttctctctctgtctgtcagtcacgTCCAAGGTCGTCATGGAAATTCTCCTGTCCTGGGACCTAGTGTCTATTGTCGTCATGCTGTTCTTTGTCTGTACAGAGTCAGCAGGTGACTCATCAAAATATCTGAAAAACAAATCAGCTTCTTTGGGAGAAATTGTTACTTTGGTTTGCAATAACTCAGAGACGAATGCATCATACATCTGGAAGAAGGACACAGTTCTTATTTTCTCTCATAGTGACAAACTGAATAAATCTCAAAGAAAATTCACCTCTGACAGGATGAGTGTTGATCCACCTACAAAGCTGACTATCTTTAATGTAGAGTTAAATGACACCGGGAGCTACAGCTGTCAAATAACAGATGATCAAAGTGGTGTACGGACAATGGAGTGGAATTTGACCATCACTAATAACCTCACAGATCATGCTGAATATAACCTACGGGGGTTATTGCTCTTCACAATTCCCTCTGCTATTGGAGGAGTGGTTCTCTGCATTAACATCTGTTGTATGGTCTGGCTGTGTAGGAAACAAATTCCGGAACAGACAAGTCATTGTGATAGGCACGGAGAGGTGCAGCAGGAATGCAATGAAGAGATGATTTATGAAAACTGTCTAGCTACAGATGCTACACAACGCTGTCAACATGGACCCACAACACTGAGAGAAAAGGAGGCACATTAAACAGGATGAGAACAGAGAATGTGACTGAGGGGTGGAGGTGTGGGTGAGAAAATGTATAGCATTTCTATTTCAGACATTGACCACCTGATAACAACAGTGCTGAGGTGATGGAAATAATGTATATGGACATAATTTGTACCAGAGCATGAGAGACAGATACGTCTCTGTACTATATAGTCAAAAGATGGTGCTCAGGGGTTTAGGACTGGTTAGACTGTTGTGGGCTAGAATTTGCATAGAAGATGGAAAGCTAAGCCTTGTTTacagaaaaataaaaaatgaaattattTGTATCTATGGATCAAATGCAATGTATCTCAGAAAGTCACACGTTGTTTCTAGATAGCAGTGGCCTCCCTGCATTATTTTTAGAAGAACATTGAAATAATGTATCCACCCAGTTGATGTGTGTCCAGGCCCTGAAATAGACATAAAGCAACAAGAAGGCCTGGAAGTTAGGTGTAAGGAACTACATTGACATATTAACagcaacgacaacaacaacaaatgaaaATCCTGTACACTATGAATAACAACATGAGTGAAGAACAACTACTGTAAAGTGTACACATATAGAGAAACATGCACCCTGCAGAATGACAACTTAAGGCCACTGGTCACACCATGATGGGAGAAAGACGAAGTGGTATAGAGAGGCCTGGGAAAGAGTTGGTGCAGGTGTCAAACTGTTAAATAAACGTTATTTGTGAATACATGTGCGAATAGAAAATTGTAACATTTCCTGCACTtggtaaataaaaacaaattgtCATTATTTACATGAA

Function

NR:

description
uncharacterized protein LOC110520453

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597782.2 True 1572 mRNA 0.40 5 67617490 67636658

Neighbor

gene id symbol gene type direction distance location
LOC110520452 LOC106586638 coding downstream 48792 67545597 ~ 67568698 (-)
LOC110520451 LOC106586637 coding downstream 75161 67524601 ~ 67542329 (-)
LOC110520443 LOC106586629 coding downstream 330530 67275729 ~ 67286960 (-)
LOC110520442 LOC106586628 coding downstream 381245 67224861 ~ 67236245 (-)
LOC110520437 LOC106586625 coding downstream 538842 67066357 ~ 67078648 (-)
LOC110520454 LOC106586643 coding upstream 48392 67685050 ~ 67706221 (-)
LOC118944713 LOC106592868 coding upstream 139753 67776411 ~ 67786849 (-)
LOC110520455 LOC106586642 coding upstream 200047 67836705 ~ 67881418 (-)
LOC110520458 LOC106586647 coding upstream 263698 67900356 ~ 67916858 (-)
nr1i2 nr1i2 coding upstream 488945 68125603 ~ 68147765 (-)
G289421 NA non-coding downstream 26088 67591065 ~ 67591402 (-)
G289394 NA non-coding downstream 73257 67543828 ~ 67544233 (-)
G289382 NA non-coding downstream 98238 67518882 ~ 67519252 (-)
G289378 NA non-coding downstream 104335 67512914 ~ 67513155 (-)
G289371 LOC105911894 non-coding downstream 115361 67501613 ~ 67502129 (-)
G289652 NA non-coding upstream 42204 67678862 ~ 67680167 (-)
G289649 NA non-coding upstream 68376 67705034 ~ 67881378 (-)
G289716 NA non-coding upstream 116642 67753300 ~ 67808257 (-)
G289754 NA non-coding upstream 287274 67923932 ~ 67924167 (-)
G288578 NA other downstream 774609 66842671 ~ 66842881 (-)
G287112 NA other downstream 2036995 65579791 ~ 65580495 (-)
G287042 NA other downstream 2170207 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 2317073 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 2381582 65235180 ~ 65235908 (-)
G289653 LOC106607871 other upstream 247094 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 569932 68206330 ~ 68208674 (-)
G290542 NA other upstream 942445 68579103 ~ 68580707 (-)
G290567 NA other upstream 989674 68626332 ~ 68647620 (-)
G290598 NA other upstream 1073709 68710367 ~ 68717385 (-)

Expression


Co-expression Network