LOC110520454 (LOC106586643)


Basic Information

Item Value
gene id LOC110520454
gene name LOC106586643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67685050 ~ 67706221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975013.1
CCCCATTGTGCTATAGCTGCTGTGGCTTACTGAATTAGTGTTTTCCAACAGTAGGAGGACATTTTTCTGTCAGCACAAACATCAAAAACAAATGTCTGCTATTTCAGCAGAGGAACTTCCATTCATCAAAAGCAATGAGAAGAGCAAAGCATGTTACTGAAGCTGAGCTGTGTGATTCTACTCATCATCCAGAGGGATACAGAAAGTACACGGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGACAACTGAGGACCTCGAACAGATAACATGGCAGAAAAGTACTTGGGAAGAAACACAGAACCATAATTTTATGCTGATTTATCCCAATGGGGTTACTAAATTTATTGCACCGAATGGATTGAGTGGTAGAGTCCAGTTTATTGGGAACCCATCAGAAAACCTTGGATCTATTCGAATAACAGCTGTCAGACTGTTTGATGAAGGCACCTTCACATGTATCTTCAGTGTTTTCCCTAGTGGAGCATACACTACAGAGATACTTCTGACTGTGCTTGTTCCTCCAGTAGTGAGTGTGACAGTTTATGTTCCTCCTGTCACTGGGGAGAATGAGGTTGTCTTAGCAACCTGTATGGCTGCTGGTGCCAAGCCACAGGCAGAAGTGACATGGAAGACGGGTGCATTTGGCAGTTTGTTGAGGACAGTGACTAACTTCACACAGCACACCAATGGAACCACCACAGTACTCAGCCACCTGCTAGGGTTGCCAACCAGAGCAGCCAATCAGCAGCAGGTCCAGTGTGTGGTCAACCAGTCTGCCCTGGCAACAGAAAGGAGCTACAACTACACCATAGATATCCACTaTCCACCTCAGACAGTGAACGTTACCTTTAGTGAGGCCTCTAAAGACACAGTCTTACTATGTGTAGCAGATGGCAACCCACACCCCAACTACACCTGGAGCAGagTGGCCCAGCCATGGCCTGAGTCTTCAGTGAGAGCAGAGGGAGACATAGTGCACTTCCTCAGTCTCAGCTCTGAGCTGAATGGTCTCTATGTCTGTGAGGCCTCCAACCCCTACGGACGAGCAACTGGTTCCCTCAATGTACACATATTCTCTGagACCTCTGCTGCCTGTTGGGTTCTACTCGTTGTCATTCTCTGTCTGATTGTTGCTGCGGTTGCACTCATGTTGTACAGGTACAAATACGGACAGTTTCCTTGGAGTCCAATCATTGCCAATAACCAGTTCCAGGCACCACCACAGGTTGAGGAAGATGAACCTGGGACGTCTGGGTTCTAACACTCCAAACCAGGAAGGTGGATAAGGGAGAAGTAACGTGATAAATCACTGGACAGCCTGAGAACAGATGCCAGAAGAAGCGCAGACATGCACTATGTGGGGGAAGAATTCCAGTCTGCACATTCTCCAACGCTACAGCCATTTGCAAGAACAGGCACATTCTccaactttaaaaaaatatgtatttaactaggcaagtgacttaagaacaaattcttatttacaatgacggcctacaccggccaaactcggACAACGCTGGGAAAATTGTgcgacgccctatgggactcccaatcacagccagttgtgatacagtctggatttaaaacaggttgtctgtagtgacctctctagcactgagatgcagtgtcttagaccactgtgccacttgggagcctaATGAACAGGGACCCTATGCAGGATTCTCTGTGACATTAGAAACCTCAGCTtggcccctcctccaccacagCTTTAAATAGTGCTGGTCCTCGTTTCCATTTTTGTTCCCCTCTCATGGACTCTGCCTTGCCGTGGTGGAGGGGCATTGTTGCTTCAGTGGGAACAACAACTTTCCTTTATGTAtatgcactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaaatacttttttctttacatagttgaatgtgctgacaacaaaat
>XM_036975014.1
CCCCATTGTGCTATAGCTGCTGTGGCTTACTGAATTAGTGTTTTCCAACAGTAGGAGGACATTTTTCTGTCAGCACAAACATCAAAAACAAATGTCTGCTATTTCAGCAGAGGAACTTCCATTCATCAAAAGCAATGAGAAGAGCAAAGCATGTTACTGAAGCTGAGCTGTGTGATTCTACTCATCATCCAGAGGGATACAGAAAGTACACGGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGACAACTGAGGACCTCGAACAGATAACATGGCAGAAAAGTACTTGGGAAGAAACACAGAACCATAATTTTATGCTGATTTATCCCAATGGGGTTACTAAATTTATTGCACCGAATGGATTGAGTGGTAGAGTCCAGTTTATTGGGAACCCATCAGAAAACCTTGGATCTATTCGAATAACAGCTGTCAGACTGTTTGATGAAGGCACCTTCACATGTATCTTCAGTGTTTTCCCTAGTGGAGCATACACTACAGAGATACTTCTGACTGTGCTTGTTCCTCCAGTAGTGAGTGTGACAGTTTATGTTCCTCCTGTCACTGGGGAGAATGAGGTTGTCTTAGCAACCTGTATGGCTGCTGGTGCCAAGCCACAGGCAGAAGTGACATGGAAGACGGGTGCATTTGGCAGTTTGTTGAGGACAGTGACTAACTTCACACAGCACACCAATGGAACCACCACAGTACTCAGCCACCTGCTAGGGTTGCCAACCAGAGCAGCCAATCAGCAGCAGGTCCAGTGTGTGGTCAACCAGTCTGCCCTGGCAACAGAAAGGAGCTACAACTACACCATAGATATCCACTaTCCACCTCAGACAGTGAACGTTACCTTTAGTGAGGCCTCTAAAGACACAGTCTTACTATGTGTAGCAGATGGCAACCCACACCCCAACTACACCTGGAGCAGagTGGCCCAGCCATGGCCTGAGTCTTCAGTGAGAGCAGAGGGAGACATAGTGCACTTCCTCAGTCTCAGCTCTGAGCTGAATGGTCTCTATGTCTGTGAGGCCTCCAACCCCTACGGACGAGCAACTGGTTCCCTCAATGTACACATATTCTCTGagACCTCTGCTGCCTGTTGGGTTCTACTCGTTGTCATTCTCTGTCTGATTGTTGCTGCGGTTGCACTCATGTTGTACAGGAGTCCAATCATTGCCAATAACCAGTTCCAGGCACCACCACAGGTTGAGGAAGATGAACCTGGGACGTCTGGGTTCTAACACTCCAAACCAGGAAGGTGGATAAGGGAGAAGTAACGTGATAAATCACTGGACAGCCTGAGAACAGATGCCAGAAGAAGCGCAGACATGCACTATGTGGGGGAAGAATTCCAGTCTGCACATTCTCCAACGCTACAGCCATTTGCAAGAACAGGCACATTCTccaactttaaaaaaatatgtatttaactaggcaagtgacttaagaacaaattcttatttacaatgacggcctacaccggccaaactcggACAACGCTGGGAAAATTGTgcgacgccctatgggactcccaatcacagccagttgtgatacagtctggatttaaaacaggttgtctgtagtgacctctctagcactgagatgcagtgtcttagaccactgtgccacttgggagcctaATGAACAGGGACCCTATGCAGGATTCTCTGTGACATTAGAAACCTCAGCTtggcccctcctccaccacagCTTTAAATAGTGCTGGTCCTCGTTTCCATTTTTGTTCCCCTCTCATGGACTCTGCCTTGCCGTGGTGGAGGGGCATTGTTGCTTCAGTGGGAACAACAACTTTCCTTTATGTAtatgcactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaaatacttttttctttacatagttgaatgtgctgacaacaaaat
>XM_036975015.1
CCCCATTGTGCTATAGCTGCTGTGGCTTACTGAATTAGTGTTTTCCAACAGTAGGAGGACATTTTTCTGTCAGCACAAACATCAAAAACAAATGTCTGCTATTTCAGCAGAGGAACTTCCATTCATCAAAAGCAATGAGAAGAGCAAAGCATGTTACTGAAGCTGAGCTGTGTGATTCTACTCATCATCCAGAGGGATACAGAAAGTACACGGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGACAACTGAGGACCTCGAACAGATAACATGGCAGAAAAGTAGAGTCCAGTTTATTGGGAACCCATCAGAAAACCTTGGATCTATTCGAATAACAGCTGTCAGACTGTTTGATGAAGGCACCTTCACATGTATCTTCAGTGTTTTCCCTAGTGGAGCATACACTACAGAGATACTTCTGACTGTGCTTGTTCCTCCAGTAGTGAGTGTGACAGTTTATGTTCCTCCTGTCACTGGGGAGAATGAGGTTGTCTTAGCAACCTGTATGGCTGCTGGTGCCAAGCCACAGGCAGAAGTGACATGGAAGACGGGTGCATTTGGCAGTTTGTTGAGGACAGTGACTAACTTCACACAGCACACCAATGGAACCACCACAGTACTCAGCCACCTGCTAGGGTTGCCAACCAGAGCAGCCAATCAGCAGCAGGTCCAGTGTGTGGTCAACCAGTCTGCCCTGGCAACAGAAAGGAGCTACAACTACACCATAGATATCCACTaTCCACCTCAGACAGTGAACGTTACCTTTAGTGAGGCCTCTAAAGACACAGTCTTACTATGTGTAGCAGATGGCAACCCACACCCCAACTACACCTGGAGCAGagTGGCCCAGCCATGGCCTGAGTCTTCAGTGAGAGCAGAGGGAGACATAGTGCACTTCCTCAGTCTCAGCTCTGAGCTGAATGGTCTCTATGTCTGTGAGGCCTCCAACCCCTACGGACGAGCAACTGGTTCCCTCAATGTACACATATTCTCTGagACCTCTGCTGCCTGTTGGGTTCTACTCGTTGTCATTCTCTGTCTGATTGTTGCTGCGGTTGCACTCATGTTGTACAGGTACAAATACGGACAGTTTCCTTGGAGTCCAATCATTGCCAATAACCAGTTCCAGGCACCACCACAGGTTGAGGAAGATGAACCTGGGACGTCTGGGTTCTAACACTCCAAACCAGGAAGGTGGATAAGGGAGAAGTAACGTGATAAATCACTGGACAGCCTGAGAACAGATGCCAGAAGAAGCGCAGACATGCACTATGTGGGGGAAGAATTCCAGTCTGCACATTCTCCAACGCTACAGCCATTTGCAAGAACAGGCACATTCTccaactttaaaaaaatatgtatttaactaggcaagtgacttaagaacaaattcttatttacaatgacggcctacaccggccaaactcggACAACGCTGGGAAAATTGTgcgacgccctatgggactcccaatcacagccagttgtgatacagtctggatttaaaacaggttgtctgtagtgacctctctagcactgagatgcagtgtcttagaccactgtgccacttgggagcctaATGAACAGGGACCCTATGCAGGATTCTCTGTGACATTAGAAACCTCAGCTtggcccctcctccaccacagCTTTAAATAGTGCTGGTCCTCGTTTCCATTTTTGTTCCCCTCTCATGGACTCTGCCTTGCCGTGGTGGAGGGGCATTGTTGCTTCAGTGGGAACAACAACTTTCCTTTATGTAtatgcactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaaatacttttttctttacatagttgaatgtgctgacaacaaaat

Function

NR:

description
nectin-3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975013.1 False 2000 mRNA 0.46 10 67685050 67706221
XM_036975014.1 False 1976 mRNA 0.46 10 67685050 67706221
XM_036975015.1 True 1913 mRNA 0.47 11 67685050 67706221

Neighbor

gene id symbol gene type direction distance location
LOC110520453 LOC106586647 coding downstream 48392 67617490 ~ 67636658 (-)
LOC110520452 LOC106586638 coding downstream 116352 67545597 ~ 67568698 (-)
LOC110520451 LOC106586637 coding downstream 142721 67524601 ~ 67542329 (-)
LOC110520443 LOC106586629 coding downstream 398090 67275729 ~ 67286960 (-)
LOC110520442 LOC106586628 coding downstream 448805 67224861 ~ 67236245 (-)
LOC118944713 LOC106592868 coding upstream 70190 67776411 ~ 67786849 (-)
LOC110520455 LOC106586642 coding upstream 130484 67836705 ~ 67881418 (-)
LOC110520458 LOC106586647 coding upstream 194135 67900356 ~ 67916858 (-)
nr1i2 nr1i2 coding upstream 419382 68125603 ~ 68147765 (-)
si:ch211-214p13.7 NA coding upstream 500109 68206330 ~ 68208674 (-)
G289652 NA non-coding downstream 4883 67678862 ~ 67680167 (-)
G289677 NA non-coding downstream 53238 67625400 ~ 67631812 (-)
G289676 NA non-coding downstream 53841 67624211 ~ 67631209 (-)
G289674 NA non-coding downstream 56549 67622118 ~ 67628501 (-)
G289421 NA non-coding downstream 93648 67591065 ~ 67591402 (-)
G289716 NA non-coding upstream 47079 67753300 ~ 67808257 (-)
G289754 NA non-coding upstream 217711 67923932 ~ 67924167 (-)
G289757 NA non-coding upstream 223250 67929471 ~ 67929673 (-)
G289759 NA non-coding upstream 225122 67931343 ~ 67931791 (-)
G289678 NA other downstream 51557 67626832 ~ 67633493 (-)
G288578 NA other downstream 842169 66842671 ~ 66842881 (-)
G287112 NA other downstream 2104555 65579791 ~ 65580495 (-)
G287042 NA other downstream 2237767 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 2384633 65298207 ~ 65300417 (-)
G289653 LOC106607871 other upstream 177531 67883752 ~ 67886232 (-)
G290542 NA other upstream 872882 68579103 ~ 68580707 (-)
G290567 NA other upstream 920111 68626332 ~ 68647620 (-)
G290598 NA other upstream 1004146 68710367 ~ 68717385 (-)

Expression


Co-expression Network