LOC110520458 (LOC106586647)


Basic Information

Item Value
gene id LOC110520458
gene name LOC106586647
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67900356 ~ 67916858 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597794.2
TCtgttctccatcctcctcagacTACCGAAATGTTCATGTCCCGCTCTCTCTGAGTGTTTCCTGGTTAGCTAGCTGTGACACTGATCTCAGACTCTGACGTTCCACTCCActctgtccatttctctctctgtcaatcagCTATGTCTAATATCGTCATGGAAACTCTCCTGTCCTGGGACCTGGTGTCTGTGGTCATCATGCTGTTCCTTGTCTCTACAGGTGACTCAACAAAATATCAGAAAAATAAATCAGCTTCTTTGGGAGAAATTGTTACTTTGGTTTGCAATAACTCAGAGACGAATGCATCATACATCTGGAAGAAGGATACAGTTCTTATTTTCTCTCATAGTGACAAACTGAATAAAACTGAAAGGAACATCACCTCTGACAGGATGAGTGTTGATCCACCTACAAAGCTGACTATCTTTAATGTAGAGTTAAATGACACCGGGAGCTACAGCTGTCAAATAACAGATGATCAACGTGGTGTATGGAAAATGGAGTGGAATTTGACCATCACTAATAACCTCACAGGTCATGCTGAATATAACCTACGGAGGTTATTGCTCTTCACAATTCCATCTGCTATTGGAGGAGGGGTTCTCTGCATTAACATCTGTTGTATGGTCTGGCTGTGTAGGAAACGAAAACAGGAACAGAAAAGTCATTGTGATAAGCACGGAGAGGAGAGCAATGCACAGTCTGATGGTCACACTGCCAGAAGAGAACAACACCAGTGCAGTCAATACTTTGAAAGACTCAACTCAGTCTATGGACTGTAGTAATCACACAGCAGTTACTTAACATGCCAAAAAAGAGTCAAGTATCATAGACGGGTTAGCTGACAAGGTCACGACAACAAAGCACATGCTTCAATGAGGAAGAAGTCCATGTGTAGTTGTGGTTCTGGATGACCAGATAACTAGCAACATTGACAAGAAGCTGCTATGTGGGAATCTTAGGTGGTTCGTTTCAGCTTGTTGTGTCTAGTTAGTGATACTGTGATGGAACATTTTCTGTTTGTgtttttctaataaccaatttctgtgctcatgcaagtgactgattgaacaTGCAGAGgaggaatcctcactatcagtatgcaatttggcagtacaccCAGAACCGTGTTTTGAGAACTAAAGGGATATCttagtttcaaggtctcagcttggagAGAGGAAGCCTCTTAAggtattggtcagtcacatgcATGAACCAAACGTTAATGATGAATTAATGATGAATAATGAATAAGCCAAaccatgcaaatataacttgtctgtgtgaGCAGTATATAAGAGAACTAACGGGACTGGCCCGGTGAAGCTCACTTCAGACCGACACTTTATGCATCTCCGTTTGACTGGGACGTCTTCAGCGTGCTGTAAATAAACAATgcttcatttaagattgacttcaaGTGTCCCTGTGTAGAATTTCCATGACAATGCCATATCTTGTTTTGAAGTGTTTTGACACATCTAGCTAATATGGCAAaaatgtgctagctagctaaacaacaaCTGTAACAgcgtatttgagagacaacaagtgctcaatgtgcaaatgtatttatgtttccaatggtaacactttacttgacacccagcggcATACCACGTTATGACACcctcataaccatatcataatatgtcataacaacTGACATAACGTGTCATATCCTGTCAttatatggtcataacactgtcatgacacatatatgtacacctgttgtgacatatattgcattattttatggctggttggTTAT
>TU328471
CTATATTGTTATAAAGCAAAGGAATACAACACGTTTAGGCTTGTCAACTCTCCTGAAAATCCCAATTGTTTCTGTCTTAACACAGGTCATGCTGAATATAACCTACGGAGGTTATTGCTCTTCACAATTCCATCTGCTATTGGAGGAGGGGTTCTCTGCATTAACATCTGTTGTATGGTCTGGCTGTGTAGGAAACGAAAACAGGAACAGAAAAGTCATTGTGATAAGCACGGAGAGGAGAGCAATGCACAGTCTGATGGTCACACTGCCAGAAGAGAACAACACCAGTGCAGTCAATACTTTGAAAGACTCAACTCAGTCTATGGACTGTAGTAATCACACAGCAGTTACTTAACATGCCAAAAAAGAGTCAAGTATCATAGACGGGTTAGCTGACAAGGTCACGACAACAAAGCACATGCTTCAATGAGGAAGAAGTCCATGTGTAGTTGTGGTTCTGGATGACCAGATAACTAGCAACATTGACAAGAAGCTGCTATGTGGGAATCTTAGGTGGTTCGTTTCAGCTTGTTGTGTCTAGTTAGTGATACTGTGATGGAACATTTTCTGTTTGTgtttttctaataaccaatttctgtgctcatgcaagtgactgattgaacaTGCAGAGgaggaatcctcactatcagtatgcaatttggcagtacaccCAGAACCGTGTTTTGAGAACTAAAGGGATATCttagtttcaaggtctcagcttggagAGAGGAAGCCTCTTAAggtattggtcagtcacatgcATGAACCAAACGTTAATGATGAATTAATGATGAATAATGAATAAGCCAAaccatgcaaatataacttgtctgtgtgaGCAGTATATAAGAGAACTAACGGGACTGGCCCGGTGAAGCTCACTTCAGA

Function

NR:

description
uncharacterized protein LOC110520458

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597794.2 False 1775 mRNA 0.41 5 67900356 67916858
TU328471 True 891 lncRNA 0.41 3 67900790 67915943

Neighbor

gene id symbol gene type direction distance location
LOC110520455 LOC106586642 coding downstream 18938 67836705 ~ 67881418 (-)
LOC118944713 LOC106592868 coding downstream 113507 67776411 ~ 67786849 (-)
LOC110520454 LOC106586643 coding downstream 194135 67685050 ~ 67706221 (-)
LOC110520453 LOC106586647 coding downstream 263698 67617490 ~ 67636658 (-)
LOC110520452 LOC106586638 coding downstream 331658 67545597 ~ 67568698 (-)
nr1i2 nr1i2 coding upstream 208745 68125603 ~ 68147765 (-)
si:ch211-214p13.7 NA coding upstream 289472 68206330 ~ 68208674 (-)
LOC110520466 cd200 coding upstream 310414 68227272 ~ 68253241 (-)
LOC110520467 LOC106586653 coding upstream 361714 68278572 ~ 68292750 (-)
LOC110520470 LOC106586656 coding upstream 538603 68455461 ~ 68460579 (-)
G289649 NA non-coding downstream 18978 67705034 ~ 67881378 (-)
G289716 NA non-coding downstream 92099 67753300 ~ 67808257 (-)
G289652 NA non-coding downstream 220189 67678862 ~ 67680167 (-)
G289677 NA non-coding downstream 268544 67625400 ~ 67631812 (-)
G289676 NA non-coding downstream 269147 67624211 ~ 67631209 (-)
G289754 NA non-coding upstream 7074 67923932 ~ 67924167 (-)
G289757 NA non-coding upstream 12613 67929471 ~ 67929673 (-)
G289759 NA non-coding upstream 14485 67931343 ~ 67931791 (-)
G289767 NA non-coding upstream 23918 67940776 ~ 67940975 (-)
G289768 NA non-coding upstream 25192 67942050 ~ 67942284 (-)
G289653 LOC106607871 other downstream 14124 67883752 ~ 67886232 (-)
G289678 NA other downstream 266863 67626832 ~ 67633493 (-)
G288578 NA other downstream 1057475 66842671 ~ 66842881 (-)
G287112 NA other downstream 2319861 65579791 ~ 65580495 (-)
G287042 NA other downstream 2453073 65446825 ~ 65447283 (-)
G290542 NA other upstream 662245 68579103 ~ 68580707 (-)
G290567 NA other upstream 709474 68626332 ~ 68647620 (-)
G290598 NA other upstream 793509 68710367 ~ 68717385 (-)
G290602 NA other upstream 804950 68721808 ~ 68724914 (-)

Expression


Co-expression Network