lrrc58b (LOC106586648)


Basic Information

Item Value
gene id lrrc58b
gene name LOC106586648
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67982331 ~ 67989941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597797.2
AAACAGTTGCTTTGTTGTACCAGCCAGGTTCTGACAAATCACAGTGAGCTATTCTACACAATCATCTTTTCCCGACACAGGTTTATTTCTTTTCTGTCAGATGCAGTTGTAGCCCACTGCTTAGGAATACATTCTTAGCGACAATGTGGGTCGCCACCGTTCGGCTACTTCAAGGAATATTGATTTGAAACAGACGGAAACTCGGGGCCATTGGACTCCCATAAAGAGTTTGCAACCCCACGTTGTTCAGAATATTGAACAGTATCCTACACTGCGAAATGGATTTGCATGAAGGAGCCGCAAACGGTCATTGTGAGGGTGTTTTAGACCTGTCACGTCGGAATTTGAACAGTTTGAGCTTGGTCAATATCAGCGAGGGGCGAAAGAGGGACACCAAGCAGTTGTATCTAAGCTTCAATCGATTGGCCTCGCTGTCCGGATCAGTTTGCATGTTTTCCAACCTCGAGTTTCTGGACATTAGCAACAACGGACTATCGGTCATCTGTGAAGACATTACTCGGTTAACCAAGCTCAGAACACTAATATCCAAGAACAACCGTCTGGACGAATTCTCGCTGCCTAAGGAGTTTGGATCTTTGCCGTTGGAGGTGTTGAATCTAAGTGGCAATCGATTTGAGGAGATGCCAGCGCAGTTCATGAAGTTGCAGCGGCTACAATCACTTTCCCTTGGGGGAAACAGATTACAAAGTATTCCTGCAGAAATAGAAAACTTAACCAGTCTGGAGCTTCTGTATTTGGGTGGTAACCTGATCACATCTATTCCTCCTGAGCTGGCCAACCTGCCCTACCTCAGCTACCTGGTCCTGTGTGACAACCGCATCCAGGGTGTACCCCCGCAGCTCACCAGgcTCCACTCCCTGCGTTCCCTCAGTCTCCATAACAACCTGCTGACCTACCTGCCCCGGGAGATTCTCAGCCTGGTCCACCTGCAGGAGCTCAGTCTCCGTGGCAACCCCCTAGTTGTGCGCTTCGTCAAGGAAATGACGTATGACCCTCCGTCGCTGCTGGAGCTGGCGGGACGTACCATCAAGAGCCGGAACGTTCCATACTCGCCCTGCGACATGCCCTGCCACCTGCTGCACTACCTAGACCTGGCCAGCAAGTGCCCCAATCCTAAGTGTGCCGGTGTGTACTTTGACTCATGCGTGCGCCACATCAAGTTTGTGGACTTCTGTGGGAAGTACCGGCTGCCCCTCATGCACTACCTGTGCTCCCCAGAATGCACCTCACCCTGCAGCTCCAACCCCCAGAGTGACGCAGAGTCAGAGGATGAGATCAGTGTGCCTGCTGACCGCCTGCAGAAGGTGCTGCTGGGATAGCAGAAAGTGGAGAGTCCTCTGGTCGTAACCATGATAAAGGAATGAAATCTGACCCCTCTGGTCTCTCGTGTGTGTGACGCTAGactcacagacacaaacacacatatgagAGATGTCTTTAGAGGTGTGTGTCCCCGGGAACCTATTGACTGTCAGTAGCAATCTAAAATTGGGGGACAAATTGTGAGGGATCTCCTGGATAAGCATAGGAGGGCAGTAGAAAACATAACTATTGCCAACTCGCTATGTTAACCATTGAAAGGGGTTTTCATGATTTTCAAACACCATCACGCCTTTCCTGAGAACCAGGATATGAACAATGTGAGATTTCCAAGTGCCGGAAAAGTGTGACCCAGTACTCTGTGAAAGCTTTgttttctctcacacacaggaaGTCGAGCTAGGTTGGCAGAGTGTGTATGGACACCTCACAGCACAATACACACATTTACTGTGAAAGGAGAAGACCTAACTAATCTGACAAGACACAATGAAAGTTGGTATTTCCAGCCCTGGGTTTTCTCTGAATATAGACCGTTATAGATGTATTTTGATCTGTGTGGGAACATTTACACAATGTCCCCAGAAGGTACATGTTCAAGGTGAACAGGTACTACAGTAGTTGGCCTTTAAAACATTATTAAGACTAAAAATGCTGGTCTATTGTTACAATACTATGAAGAAGTGAAATTAAATGGAAggaacagcaacaaaaaaaaccaTTACCTTTTGCACCCTGAAATATGTGACAATTCACCATTTGAGTTTGTCTTTTGTTTCCTGGAAGTGATTTTCTATTCGTGATCCTAAACCAATGtgaaaaaatcatattttttttgtaGCCTGTACTGCGCTTATACAAATCCATCGTTCTACTGTCTGACACACATTGGCTCACACTATTACAGTGCTTTTAATGAAGATAACTTATGGAATATAATATAGTACTCATACAGGTCGACGATCTGTACTAAAGTATGTGCACTTTTCCCCTTTAATATAgattgtacagtatataatatcactaataaagtttgatttggatATGTAAAA

Function

NR:

description
leucine-rich repeat-containing protein 58-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597797.2 True 2393 mRNA 0.46 4 67982331 67989941

Neighbor

gene id symbol gene type direction distance location
LOC110520461 LOC100136473 coding upstream 1375 67944878 ~ 67980956 (+)
LOC110520459 LOC106586086 coding upstream 94992 67881416 ~ 67887339 (+)
LOC118936465 LOC106586642 coding upstream 248285 67726893 ~ 67734046 (+)
LOC110504522 LOC106586570 coding upstream 379099 67599901 ~ 67603232 (+)
LOC118964316 NA coding upstream 459614 67521551 ~ 67522717 (+)
LOC110520463 LOC106586649 coding downstream 12364 68002305 ~ 68037956 (+)
LOC110504531 LOC106586650 coding downstream 68174 68058115 ~ 68114677 (+)
si:ch211-214p13.9 cd200r1 coding downstream 183707 68173648 ~ 68177773 (+)
LOC110520465 btla coding downstream 226344 68216285 ~ 68221416 (+)
si:ch73-390b10.2 gpr89 coding downstream 271473 68261414 ~ 68278415 (+)
G289586 NA non-coding upstream 40151 67941945 ~ 67942180 (+)
G289585 NA non-coding upstream 41348 67940782 ~ 67940983 (+)
G289578 NA non-coding upstream 54396 67927679 ~ 67927935 (+)
G289574 NA non-coding upstream 57738 67924329 ~ 67924593 (+)
G289572 NA non-coding upstream 62366 67919699 ~ 67919965 (+)
G289619 NA non-coding downstream 9158 67999099 ~ 67999378 (+)
G289645 NA non-coding downstream 42923 68032864 ~ 68033231 (+)
G289828 NA non-coding downstream 51188 68041129 ~ 68041899 (+)
G289840 NA non-coding downstream 67116 68057057 ~ 68057280 (+)
G289881 NA non-coding downstream 190121 68180062 ~ 68183196 (+)
G289517 NA other upstream 219908 67761737 ~ 67762423 (+)
G289486 NA other upstream 300209 67678862 ~ 67682122 (+)
G289455 NA other upstream 350121 67625353 ~ 67632210 (+)
LOC110505416 LOC106586647 other upstream 462361 67519326 ~ 67520162 (+)
G289116 NA other upstream 503402 67474973 ~ 67478929 (+)
G289883 NA other downstream 233784 68223725 ~ 68225306 (+)
LOC110520478 LOC106586673 other downstream 1636402 69625755 ~ 69635303 (+)
G291327 NA other downstream 1705454 69695395 ~ 69695836 (+)
LOC110520485 dynlt3 other downstream 1872119 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 other downstream 1929241 69915810 ~ 69923807 (+)

Expression


Co-expression Network