LOC110520463 (LOC106586649)


Basic Information

Item Value
gene id LOC110520463
gene name LOC106586649
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68002305 ~ 68037956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597798.2
ATGTACTTTTTCTTACTGACACCAGGGCACATTTTGGGATAGGATTTAGGATAGTTCTCATTTGTCATAAAAAGGATTATCAAAGAAGTCTTCGAATTGGATTATTGGGAGTGTTTCACAATGGGTCGCAGTGGAGTTGGAGCTAAACTTCACTGGACAGTTGGTTTTACTTGGTGAGACGCCAGCGATGGAGCGAGGACAGCGGCGAGGCGCCGGGACACTGTACGCACCATACGGACATTATTACCGGGAAGTTAGCTACTCCGTCAGgatgtgtgtgtgagggctgaCAGACTGGGTCCAGCCATGGAATCAGAGCAGAACTGCAGCTCTTACTGTGACTCCAGACTCTGCCTCATCCACCCTGGAGTCAATACACAAAAGGGCCTGGAGATACTGCAGAGACTATGTACCCTCAGCACGatGGAAGGGGAGCTGCAGAGGCGGTCTCTCTCCCCAGTGCTCTGTGCAGTTGTCTGGACCATGCTCTCCTGTGGCATTTTGCTGGCTTTCTGCTTCCTGCTCTTCACCCTGCGCTTCAAGAACAAcaggaTAGTGAAGATGTCCAGTCCTAACCTTAATGTGCTGACTCTGTGTGGAAGTATCCTCACCTACAGCAGTGGCTTCCTATTTGCTTTTGAGGAACGCACCCACCTACAAGGGGGAGGAGCCAGAGCAATACTCCAGGCCAGGATCTGGACATTGTGTATTGGCAGCACTCTGGTATTTGTGCCCATCCTGGGGAAAACATGGCGGCTCTACAGAGTATTCACCCAACGTGTTCCTGACAAGAGAGTGATCATCAGAGACATCCAGTTGATGGGCTTGGTATCTCTGTTGATTCTGCTGGACCTGCTGGTTCTCACCGCCTGGAGTCTAACCGACCCGGTCAAATGTGCTCGGTCCATTGGGGCTGTGGTCAAGGTGGTGGAGAGGGACATGTCCTACTCTCTGTCTCAGCTGgactcctgctcctctctctactcaGACCTGTGGCATATCCTCCTCGCCGTGATGAAGGGTAGCCTGCTCCTATATGGGACCTACCTGGCTGGTCTCACCAGCAACGTCAGCCTCCCTCCGGTCAACCAGTCCCCCACCATCATGACCGCGGTCAGCCTGGTCACCCTGTCCACGGCAGTGGGAGTCCCGGTGTCGCGGTTCCTGCAGGCCTGGCCCAACGTGGTCTATAGTATGGTGGCTGGGGCCATCTTCATCTGTACCCTCGCCACCAACTGTATGCTGTTTGTACCTCAGTTGACCCAGTGGCGTCGGTTTGAGGAGGAGCACAACAACCCTAGTCAAATGGCGAAGTACTTCAGCAGCCCCAGTAAGAGTGTCCAGTCTGTCTACAGCCAGGATGAGATCTACTACCTCATGGGGGAGAACAACTCCATGAAGAGGCTCCTCAATGAGAAGAATGCTGTGATTGACAGTCTGCAGGAGCAGGTGAACAATGCCAAAGACAAGCTACTGTGCCTCATGTCCAGTAGCCACCCCCACGAGGACCAGGAAATTGACTCTTCCACCACCAACCTCCACTCCTCATTCACCCAGACCATAGTTGTGCAGTCCGACTGCCTTCCAACTCCCCTGCCACACAGGGACATAGCAgaacctcccctctcttctcctaccTTTTCTGCACCTCCTATGTCTACTCCTCCCACTACTTCTGCTATCTATACACCTTCTTCTgattctccctctgctcctctctctactcctccacctgCCCTCTATCCTCCCCCAGGGGATGGTGTGAATGTTAAACAGTGGAGTGTAGAATTTGGTCAAGACATCCAGGGTGCAGGgatggagactgagacagggtgGTGTAAGGTTGAGGGGACTGGGTCCCAGCAGCAGTGTGGAGGGGTGAGGTCTAACCTCCCAGTCTCCCCTAAGCCCTCTGTCTTCTCCAGGACaggagtcaggacaccagggaaGAGGGCAGGGACAAAAACCACACCCTCCTGTCAGTCAAACTATGTCACTACTTCTTCCCATCTCTTTCCGGTGGGAAAGTCAGAACCCTCAGGTTGCCATGGCCATCCCGTGTTGCCAAGGGTGACAAGCGTCAGGCCGGCAGGGTTTGTGAGCAGTGAGCATCTGCAGGAGATCCTCCAGGAACTGAGTGTGGTCCCTGTCATGGAAACAGCCCTCCGCTCACCCAATCACAGCAGGGGGATCAGGAGACCCACTCTGCCCTCCTCGACCGACCCCTCagtccgctctcctctctccctccatgcccCTCGCACCCATcatccacctctcttcttccgcTACCCCAGTATCTCCCCCTACGTGATGAGGAAACGCAGACCTCCATTCCATCAACCCAGAGGGGGGCCTCCGCCCTGTTACTACCCAGGGTCAGAGACTCCTCgctggggaaggaggagggatgcTGGATCCTTACAACTAGATAAGCACCCCTCAAAAATACAACCCCAGCTCGAGCCTGTTGGCCCAGAGACCAGTCCCCTCCGCCCTGAAGACAGTGATTCAGAAGAATGGGAAGAGGCAGGGCATAGAGCAACAAATAGGTGTGGGAGGCATGGCTCGAGGTGGGAGCACCGGCTACCACCCCCTCGAAAATGCTCCATCACCCCCTTCTCAGGACACACCCACCCAGGCCCTTCAAACGGGGAGGGGAGCGGTGAGGGAGGGCTAGACCGAGACCGTGGCAGGGACTCTTATGGTTACTGGGACTCAGACTCCAGCAGCTCGGctgactactgctactaccaccgaCCCTACTGCGATGCCTGCCTGCCACACGGCTACCACCCCTCCAGCGACAGCTCCTCCTCATACTCCTCGGACAGTGAGTACGGCGGTGTTGCCGGCCTCTGCCGCTCCACACACCCTGTGGTCAACTTCAAGGAAGACCTCAATCCCACCTTCGTATGAGCCTGTCTGGAGCCTCATTTGAATGGGTGCTGCGGAAGAATCATTCAAGTCAAATTGTGTTGTAATTTACTTTCAATGGCCAGTTCACGGCAGAACAATTGAGTTTACGCACTGTTGTAACGCTATTGAGAAGTAGTAAATTGAGTGTGAACTGAAGTAAATGCTTTCCTTGTAGGCCTACCCATCCAACATGGCTATTTAGAAGGCAAAACATCTGACTTTGCATTCATGGTAATGTTCTTCCTTATTTACATGAGGAGTATCCTTGCAACACATTACCTCACAACAATCACCTTAGAAACTCTTTCATTTGGTTGCAAGTGTTTTAGAAATGGGACCAAGTTGGGGTGTGTTGTTCAATGGATTGAGATTGCTGTATGATGTCTGGGATCTGCTTTTAATTGATTGACTTTGTCTTTCATTTATTGCTCTAACTGCCAATGTCTCTAGGTGACGTTatagaaaatgtatatttgtagcTAAATAtgatacagtatttacagtagatCATATAGATTGTTACATGTTACAAAAAAATGACTTTTATTTATCTGTTACCACATACAGTgaactccaaaagtattgggacagagaCACATGTTTAGTTCTTTTGGATATACACTCCAGCACTTTTAAATTGAAATTATATAATGATAGGATGTTAAAGTGCAGAATGTCAGTTTTCATTTCAGGGGATTTTCATCCATATCGAGtaaaccatttagaaattaaagcaatttttgtacatagtccccatattttaggggaccaaaggtATAGagacattccaggtgaagctggttgagagaatgccaagagtttgcaaccctgtcatcaaggcaaagggtggctgctttgaagaatctcaaatataaaatatattttgatttgtttaacactctttttggttactacatgattccatatgtgttatgtcatagattttatatcttcactattattctacaatgtagaaaatagtaaaaataaagaaatacccttgaat

Function

NR:

description
probable G-protein coupled receptor 156

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597798.2 True 3925 mRNA 0.50 9 68002305 68037956

Neighbor

gene id symbol gene type direction distance location
lrrc58b LOC106586648 coding upstream 12364 67982331 ~ 67989941 (+)
LOC110520461 LOC100136473 coding upstream 21349 67944878 ~ 67980956 (+)
LOC110520459 LOC106586086 coding upstream 114966 67881416 ~ 67887339 (+)
LOC118936465 LOC106586642 coding upstream 268259 67726893 ~ 67734046 (+)
LOC110504522 LOC106586570 coding upstream 399073 67599901 ~ 67603232 (+)
LOC110504531 LOC106586650 coding downstream 20159 68058115 ~ 68114677 (+)
si:ch211-214p13.9 cd200r1 coding downstream 135692 68173648 ~ 68177773 (+)
LOC110520465 btla coding downstream 178329 68216285 ~ 68221416 (+)
si:ch73-390b10.2 gpr89 coding downstream 223458 68261414 ~ 68278415 (+)
LOC110504539 LOC106586655 coding downstream 286470 68324426 ~ 68365482 (+)
G289619 NA non-coding upstream 2927 67999099 ~ 67999378 (+)
G289586 NA non-coding upstream 60125 67941945 ~ 67942180 (+)
G289585 NA non-coding upstream 61322 67940782 ~ 67940983 (+)
G289578 NA non-coding upstream 74370 67927679 ~ 67927935 (+)
G289574 NA non-coding upstream 77712 67924329 ~ 67924593 (+)
G289828 NA non-coding downstream 3173 68041129 ~ 68041899 (+)
G289840 NA non-coding downstream 19101 68057057 ~ 68057280 (+)
G289881 NA non-coding downstream 142106 68180062 ~ 68183196 (+)
G289933 NA non-coding downstream 162725 68200681 ~ 68200909 (+)
G289883 NA non-coding downstream 185769 68223725 ~ 68225306 (+)
G289517 NA other upstream 239882 67761737 ~ 67762423 (+)
G289486 NA other upstream 320183 67678862 ~ 67682122 (+)
G289455 NA other upstream 370095 67625353 ~ 67632210 (+)
LOC110505416 LOC106586647 other upstream 482335 67519326 ~ 67520162 (+)
G289116 NA other upstream 523376 67474973 ~ 67478929 (+)
LOC110520478 LOC106586673 other downstream 1588387 69625755 ~ 69635303 (+)
G291327 NA other downstream 1657439 69695395 ~ 69695836 (+)
LOC110520485 dynlt3 other downstream 1824104 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 other downstream 1881226 69915810 ~ 69923807 (+)

Expression


Co-expression Network