nr1i2 (nr1i2)


Basic Information

Item Value
gene id nr1i2
gene name nr1i2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68125603 ~ 68147765 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963363.1
TCCGTCTCATGTTGAGAGAGCTCGGCATTTAGCCTTGATACTGTAGACAGCGTAACTAATAAACCTGAATTACTAATACAGTGCTTTTGTTGTATTCAACTTTTGAGGCGTTAATGTCAATTAAacttaggtttaaaaaatattattattgtcATCTTCAACCTAGAGCGTAACCAGGAAGTGAGTGGGAGCGTGGAGACGAGGGGATCTTTGGTGTGGAGGAGTGCGCTTCTCAGTGAGTGATTCTTGATAAACACTTTCACTTGAAAGTCGCAGCTACAATgttttcttcaaagtagtcatGGCCCACGGGAAGTCGCCTTCCAAGACCCGGGGATTATGATATTAGTGCTGTAATGTCTTTGTCAGAATGAGTAAGGAGAACCTCAGCGACTGGCCCGCTTCCCAGACCTctgcagaggaggaagaggaggaggaagatgatggGGAGCCCAAGGTGTGTCAGGTGTGTGGAGATCGGGCTACAGGCTATCACTTCAACGCCATGACATGTGAGGGCTGCAAGGGATTCTTCAGGCGTGCCATGAAGCACCCCACTAAGTTCTGCTGCCCGCGGCAGGGTGTCTGTGTCATCACCAAGAACAACCGCCGCCAGTGCCAGGCCTGTCGACTCCACAAATGCCAGTCCATAGGCATGCTGAAAGAGTTGATCATGTCAAAGGAGGctgtggagaagaggaggagtcagATCAGGAGGAACAGGATGGTTGAAGAGCCCCCGGTCCTCTCGCCACAACAGGAAGCTGTCATACAGGAACTGTTCAACGCCCATGAAAAGACCTTCGACATCACCTTTTCCCACTTCCagttcaggCCCATCGACAGAGACCTCAACCCCATGTCTGTGTGGAACCAGACTGCCAGTGAGCAAAGTGTAAAACAGACTAGAAGAATGGATAACTTGTCATCATCTTACTCCACATCCACCTCCACcagcttctcctcttcctcctgttctttggaggatgaggagaaggaaGACAGGAGTGGAGGGAAGAATACGGTTTTCACCACTCTGCCCGATGTAGCTGACCTTACCACCAAcatggaggagaagaaggaggaggagaaggagaagaaggaggacaGGAGTGATGGGGGGAAGAATACGGTTTTCACCACTCTGCCCCACATAGCTGACCTCACCACCTACATGATCCAAAACATCATCAACTTTGCCAAAGGACTCCCCTccttcagGGCCCTGGCCATAGACGACCAGATCTCTCTGTTGAAGGGGGCCATGTTTGAGATGATGCAGATCCGCTTCAACATGATGTTCAATGTCAAGACGGGCATCTGGGAGTGTGGTCCCCTGACATACTGCATGGACGACGCTGTCCGGGCTGGGTTTCAGCGCCACCTGTTGGACCCTCTGATGCGGTTCCACTACACCCTGAGGAACCTACAGCTACAGGAGGTGGAGTATGTTCTCATGCAGGccatctccctcttctctccagATCGTCCGGGTGTGATCAATCATGGTGTGATTGATAGTCTGCAGGAGAAGCTGGCTATTGCGCTGAAGGTCCACATCGACTCCAAGAGGGCCAAGCCTGAGAAACACCTGCTGTACCCTAAGATTCTGGCGTGTCTGACGGAGATGAGGACTATGAATGAGGAGTATACCAAACAGGTTCTGCAGATACAGGACATCCAGCCAGGCAACTCATTTGACCCACTCATCCTAGAGGTGGTCAGCAAGGACCCCTGAGACAGACACACCCAGACAGGCAGCAGCAGGGATGCCTAAATCACTTTCTGTCAGGTTTCAACAAGGACATCTAGGGAGAATCTCAATTACATGCTCCTTGTGTCCTCTCTCCTCgactccttctcaaaacccattggatgaaagAGCCAGAGGTCCCTCCCTTCCGACCTTGTCTTCctatgggttttgagaaggaggcgagaaGGAGTATGTAATTGAGAAAAGGACCTAAATCACTTTCAGACAGGTTAATCCACTTTCCTCAGCCCGATATACAGAACGGATGCCTAAATAATTGTGACAGGCTTCAACAGAGACATGTAAAACTGCCTATGGGGTGATTGAATCATTTTCCCTCTCAAGAATGtcgcttttattttattttattcaaaatATATCAAAAGAGCTATACGTAGTTTTTTAATGTGTGCTTGCTTGtatgtttttttctttcatcattCAATGATGCATATTGCCAACGCAAAAAGATTGTCAGAGACTCAGACAATTGTGTTTAAAGCACTAATGCAAAATCATCTTATACAGGACTGAACGAGGGGATGTCCCCTATGGTTCTACAGAGGTTTAAGGAGTGATTTTGTTTTCTGGGAAAAACACTCTTTGGCTGCTGTATTTCCTAAAGCTGGTCAAGTGCCTCCTTAAGTGTGAGACAAAATAAATCTTGTACATATCAATTTATCCTCATCACAGACATGTCACAGGTGAAAAGAACAGTACAATCAGAATCTACATGTGATATACATCATCTTATATGTATTGTTAACGTTACAAATGGTGCAGGTACCTGTATTCTGTGTTTTAGTGTATTTGTGTTTTTGCCTTGTTACGTGAATGTTTGGTTGTTTTTTTCTAGACATGTACAGACGTGCGTTTGGCTGTGTGAGCGTTGGGTCATGGTTGTCGTTGGTGTTTTCTGCCTTAAATATGTATATTTCTGTGTGCTGTAACACTAGTAGACACACAGGACCTCCATGGCTAGAACGTTATGACCTTTGAACTTTGTTTTGACCTACTAGTCCTACCTTCCATGAGCTCAGGTCTACAATTCCTTAGGCTTTCCTCCTTCTATTAGTGTACGGCCACACAAAGATTTGGTGTCTGAAATGTATGGATTGAGACAATAGTTTTTCAATGGACGTCATCAGATAATGCAGCCTGGTCTcgtagactagatgtaacatattAAAATGAAATACGGGACACTCAAATGAGTATGATaggttacatttggtatggttacataagacagatggatACTTcaggcaaaaacaaaagtagggtgATTGGTGTATATCGCAAAAGtctagtaacccaaaggttgcgagttcgaatctcatcacggactaTTTTAGCTAATTATCAAcctttcaactacttactactttttagctactatgcaactacttagcatgttagctaacccttcccctatccctaatcttaacccttcccctaaccctttaacctaactcataaacttaaccctaacacctagcctagctaatattagccagctagctaacgttagccatctacctagaattcgtaacatattgtacagcaTGCAAATTCGCAGCTAAAGTTTTtctaatttgtaacatattataCGAAAATGGTGATGGACaaccacaaatgaatacatatcatactaaatggagtgtctcagatttacgtacagaataataggAAATGCTTTGCGACCAGGTTGGATAATGGATGataatctgtaaaaaaaaaaaaaaaaacacacaagatTGTGCATGTGTATGTAACTCATCCAGAAAACAGTTGAGTAGAATGGTGAATGCATTTGCATGTCTCAACTGAAAATCTCACtttttaaaagttcatattctgttaactcatgcgtcatacccaaataatgttgttgactcatcctatacaaagcataaattggagaaaaaCACTTCAAACACcccacctcaaacttgtatctcaaacagtGTTTGTTTGAGGTGGTCCTATGTGTCTCAGTCAATAGTATGGGTGTTTacaagggttgtgggtttgattcccgctggggccacccatatggaaaatgtatgcacgcatgactgactgtaagtcgctttggattaAAATGTCTGCTGAAATGTTATATTATCAGCAGTCTACTCACATGCACTTTCTGAATGACCGGTATACGCCCActccattccaacacagaaaatatGCTTTTTAACGTAAGTAATTACCATTTTTGGGAaagaaaactatttcactcattgtaattaattataggtcatatttcatagaaatctggaaacactggacagttatttTAAGCTCTTTTGTATGTTAAAATAAAAGTTATACATTTAAATGATGTTAGGCTGAAGTGCTCTCTTCTATCAAACCCTCAGATAAAGAGGAATCTAAGTTtgactataacagaaccatgTAGAACAGGGCCAGGCAACAATGGGCCGGAGACCATTCAGTCTGTCCCACGGGAGGTTTGAGTCATTTGGAATATTAGTATTTTGGGTTAAAAAAACACTCCAGGCTACTCTTGAACACCTGTtgaaattataatggacctatacGTTTTTAAATAACTGCCTTTTTCCTGACCCGCAAATGGCTTTTGACGAACAAATCGATCCGAAAGCAATCGTCTGAATTTTGAAATCCCTTAATTGCTCACCactggtgtagattgtgtggctggatgaagtggacgggctgtggcctc
>XM_036963368.1
TCCGTCTCATGTTGAGAGAGCTCGGCATTTAGCCTTGATACTGTAGACAGCGTAACTAATAAACCTGAATTACTAATACAGTGCTTTTGTTGTATTCAACTTTTGAGGCGTTAATGTCAATTAAacttaggtttaaaaaatattattattgtcATCTTCAACCTAGAGCGTAACCAGGAAGTGAGTGGGAGCGTGGAGACGAGGGGATCTTTGGTGTGGAGGAGTGCGCTTCTCAGTCAGAATGAGTAAGGAGAACCTCAGCGACTGGCCCGCTTCCCAGACCTctgcagaggaggaagaggaggaggaagatgatggGGAGCCCAAGGTGTGTCAGGTGTGTGGAGATCGGGCTACAGGCTATCACTTCAACGCCATGACATGTGAGGGCTGCAAGGGATTCTTCAGGCGTGCCATGAAGCACCCCACTAAGTTCTGCTGCCCGCGGCAGGGTGTCTGTGTCATCACCAAGAACAACCGCCGCCAGTGCCAGGCCTGTCGACTCCACAAATGCCAGTCCATAGGCATGCTGAAAGAGTTGATCATGTCAAAGGAGGctgtggagaagaggaggagtcagATCAGGAGGAACAGGATGGTTGAAGAGCCCCCGGTCCTCTCGCCACAACAGGAAGCTGTCATACAGGAACTGTTCAACGCCCATGAAAAGACCTTCGACATCACCTTTTCCCACTTCCagttcaggCCCATCGACAGAGACCTCAACCCCATGTCTGTGTGGAACCAGACTGCCAGTGAGCAAAGTGTAAAACAGACTAGAAGAATGGATAACTTGTCATCATCTTACTCCACATCCACCTCCACcagcttctcctcttcctcctgttctttggaggatgaggagaaggaaGACAGGAGTGGAGGGAAGAATACGGTTTTCACCACTCTGCCCGATGTAGCTGACCTTACCACCAAcatggaggagaagaaggaggaggagaaggagaagaaggaggacaGGAGTGATGGGGGGAAGAATACGGTTTTCACCACTCTGCCCCACATAGCTGACCTCACCACCTACATGATCCAAAACATCATCAACTTTGCCAAAGGACTCCCCTccttcagGGCCCTGGCCATAGACGACCAGATCTCTCTGTTGAAGGGGGCCATGTTTGAGATGATGCAGATCCGCTTCAACATGATGTTCAATGTCAAGACGGGCATCTGGGAGTGTGGTCCCCTGACATACTGCATGGACGACGCTGTCCGGGCTGGGTTTCAGCGCCACCTGTTGGACCCTCTGATGCGGTTCCACTACACCCTGAGGAACCTACAGCTACAGGAGGTGGAGTATGTTCTCATGCAGGccatctccctcttctctccagATCGTCCGGGTGTGATCAATCATGGTGTGATTGATAGTCTGCAGGAGAAGCTGGCTATTGCGCTGAAGGTCCACATCGACTCCAAGAGGGCCAAGCCTGAGAAACACCTGCTGTACCCTAAGATTCTGGCGTGTCTGACGGAGATGAGGACTATGAATGAGGAGTATACCAAACAGGTTCTGCAGATACAGGACATCCAGCCAGGCAACTCATTTGACCCACTCATCCTAGAGGTGGTCAGCAAGGACCCCTGAGACAGACACACCCAGACAGGCAGCAGCAGGGATGCCTAAATCACTTTCTGTCAGGTTTCAACAAGGACATCTAGGGAGAATCTCAATTACATGCTCCTTGTGTCCTCTCTCCTCgactccttctcaaaacccattggatgaaagAGCCAGAGGTCCCTCCCTTCCGACCTTGTCTTCctatgggttttgagaaggaggcgagaaGGAGTATGTAATTGAGAAAAGGACCTAAATCACTTTCAGACAGGTTAATCCACTTTCCTCAGCCCGATATACAGAACGGATGCCTAAATAATTGTGACAGGCTTCAACAGAGACATGTAAAACTGCCTATGGGGTGATTGAATCATTTTCCCTCTCAAGAATGtcgcttttattttattttattcaaaatATATCAAAAGAGCTATACGTAGTTTTTTAATGTGTGCTTGCTTGtatgtttttttctttcatcattCAATGATGCATATTGCCAACGCAAAAAGATTGTCAGAGACTCAGACAATTGTGTTTAAAGCACTAATGCAAAATCATCTTATACAGGACTGAACGAGGGGATGTCCCCTATGGTTCTACAGAGGTTTAAGGAGTGATTTTGTTTTCTGGGAAAAACACTCTTTGGCTGCTGTATTTCCTAAAGCTGGTCAAGTGCCTCCTTAAGTGTGAGACAAAATAAATCTTGTACATATCAATTTATCCTCATCACAGACATGTCACAGGTGAAAAGAACAGTACAATCAGAATCTACATGTGATATACATCATCTTATATGTATTGTTAACGTTACAAATGGTGCAGGTACCTGTATTCTGTGTTTTAGTGTATTTGTGTTTTTGCCTTGTTACGTGAATGTTTGGTTGTTTTTTTCTAGACATGTACAGACGTGCGTTTGGCTGTGTGAGCGTTGGGTCATGGTTGTCGTTGGTGTTTTCTGCCTTAAATATGTATATTTCTGTGTGCTGTAACACTAGTAGACACACAGGACCTCCATGGCTAGAACGTTATGACCTTTGAACTTTGTTTTGACCTACTAGTCCTACCTTCCATGAGCTCAGGTCTACAATTCCTTAGGCTTTCCTCCTTCTATTAGTGTACGGCCACACAAAGATTTGGTGTCTGAAATGTATGGATTGAGACAATAGTTTTTCAATGGACGTCATCAGATAATGCAGCCTGGTCTcgtagactagatgtaacatattAAAATGAAATACGGGACACTCAAATGAGTATGATaggttacatttggtatggttacataagacagatggatACTTcaggcaaaaacaaaagtagggtgATTGGTGTATATCGCAAAAGtctagtaacccaaaggttgcgagttcgaatctcatcacggactaTTTTAGCTAATTATCAAcctttcaactacttactactttttagctactatgcaactacttagcatgttagctaacccttcccctatccctaatcttaacccttcccctaaccctttaacctaactcataaacttaaccctaacacctagcctagctaatattagccagctagctaacgttagccatctacctagaattcgtaacatattgtacagcaTGCAAATTCGCAGCTAAAGTTTTtctaatttgtaacatattataCGAAAATGGTGATGGACaaccacaaatgaatacatatcatactaaatggagtgtctcagatttacgtacagaataataggAAATGCTTTGCGACCAGGTTGGATAATGGATGataatctgtaaaaaaaaaaaaaaaaacacacaagatTGTGCATGTGTATGTAACTCATCCAGAAAACAGTTGAGTAGAATGGTGAATGCATTTGCATGTCTCAACTGAAAATCTCACtttttaaaagttcatattctgttaactcatgcgtcatacccaaataatgttgttgactcatcctatacaaagcataaattggagaaaaaCACTTCAAACACcccacctcaaacttgtatctcaaacagtGTTTGTTTGAGGTGGTCCTATGTGTCTCAGTCAATAGTATGGGTGTTTacaagggttgtgggtttgattcccgctggggccacccatatggaaaatgtatgcacgcatgactgactgtaagtcgctttggattaAAATGTCTGCTGAAATGTTATATTATCAGCAGTCTACTCACATGCACTTTCTGAATGACCGGTATACGCCCActccattccaacacagaaaatatGCTTTTTAACGTAAGTAATTACCATTTTTGGGAaagaaaactatttcactcattgtaattaattataggtcatatttcatagaaatctggaaacactggacagttatttTAAGCTCTTTTGTATGTTAAAATAAAAGTTATACATTTAAATGATGTTAGGCTGAAGTGCTCTCTTCTATCAAACCCTCAGATAAAGAGGAATCTAAGTTtgactataacagaaccatgTAGAACAGGGCCAGGCAACAATGGGCCGGAGACCATTCAGTCTGTCCCACGGGAGGTTTGAGTCATTTGGAATATTAGTATTTTGGGTTAAAAAAACACTCCAGGCTACTCTTGAACACCTGTtgaaattataatggacctatacGTTTTTAAATAACTGCCTTTTTCCTGACCCGCAAATGGCTTTTGACGAACAAATCGATCCGAAAGCAATCGTCTGAATTTTGAAATCCCTTAATTGCTCACCactggtgtagattgtgtggctggatgaagtggacgggctgtggcctc
>NM_001124672.1
ATGAGTAAGGAGAACCTCAGCGACTGGCCCGCTTCCCAGACCTctgcagaggaggaagaggaggaggaagatgatggGGAGCCCAAGGTGTGTCAGGTGTGTGGAGATCGGGCTACAGGCTATCACTTCAACGCCATGACATGTGAGGGCTGCAAGGGATTCTTCAGGCGTGCCATGAAGCACCCCACTAAGTTCTGCTGCCCGCGGCAGGGTGTCTGTGTCATCACCAAGAACAACCGCCGCCAGTGCCAGGCCTGTCGACTCCACAAATGCCAGTCCATAGGCATGCTGAAAGAGTTGATCATGTCAAAGGAGGctgtggagaagaggaggagtcagATCAGGAGGAACAGGATGGTTGAAGAGCCCCCGGTCCTCTCGCCACAACAGGAAGCTGTCATACAGGAACTGTTCAACGCCCATGAAAAGACCTTCGACATCACCTTTTCCCACTTCCagttcaggCCCATCGACAGAGACCTCAACCCCATGTCTGTGTGGAACCAGACTGCCAGTGAGCAAAGTGTAAAACAGACTAGAAGAATGGATAACTTGTCATCATCTTACTCCACATCCACCTCCACcagcttctcctcttcctcctgttctttggaggatgaggagaaggaaGACAGGAGTGGAGGGAAGAATACGGTTTTCACCACTCTGCCCGATGTAGCTGACCTTACCACCAAcatggaggagaagaaggaggaggagaaggagaagaaggaggacaGGAGTGATGGGGGGAAGAATACGGTTTTCACCACTCTGCCCCACATAGCTGACCTCACCACCTACATGATCCAAAACATCATCAACTTTGCCAAAGGACTCCCCTccttcagGGCCCTGGCCATAGACGACCAGATCTCTCTGTTGAAGGGGGCCATGTTTGAGATGATGCAGATCCGCTTCAACATGATGTTCAATGTCAAGACGGGCATCTGGGAGTGTGGTCCCCTGACATACTGCATGGACGACGCTGTCCGGGCTGGGTTTCAGCGCCACCTGTTGGACCCTCTGATGCGGTTCCACTACACCCTGAGGAACCTACAGCTACAGGAGGTGGAGTATGTTCTCATGCAGGccatctccctcttctctccagATCGTCCGGGTGTGATCAATCATGGTGTGATTGATAGTCTGCAGGAGAAGCTGGCTATTGCGCTGAAGGTCCACATCGACTCCAAGAGGGCCAAGCCTGAGAAACACCTGCTGTACCCTAAGATTCTGGCGTGTCTGACGGAGATGAGGACTATGAATGAGGAGTATACCAAACAGGTTCTGCAGATACAGGACATCCAGCCAGGCAACTCATTTGACCCACTCATCCTAGAGGTGGTCAGCAAGGACCCCTGA

Function

symbol description
nr1i2 Enables nuclear receptor activity and steroid hormone receptor activity. Acts upstream of or within regulation of transcription, DNA-templated; response to toxic substance; and transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including adenohypophyseal placode; brain; heart; liver; and pleuroperitoneal region. Orthologous to human NR1I2 (nuclear receptor subfamily 1 group I member 2).

NR:

description
nuclear receptor subfamily 1 group I member 2

GO: NA

KEGG:

id description
K08540 NR1I2, PXR; pregnane X receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963363.1 False 4475 mRNA 0.43 9 68125603 68147765
XM_036963368.1 False 4346 mRNA 0.43 9 68125603 68147765
NM_001124672.1 True 1368 mRNA 0.53 8 68128340 68144764

Neighbor

gene id symbol gene type direction distance location
LOC110520458 LOC106586647 coding downstream 208745 67900356 ~ 67916858 (-)
LOC110520455 LOC106586642 coding downstream 244185 67836705 ~ 67881418 (-)
LOC118944713 LOC106592868 coding downstream 338754 67776411 ~ 67786849 (-)
LOC110520454 LOC106586643 coding downstream 419382 67685050 ~ 67706221 (-)
LOC110520453 LOC106586647 coding downstream 488945 67617490 ~ 67636658 (-)
si:ch211-214p13.7 NA coding upstream 58565 68206330 ~ 68208674 (-)
LOC110520466 cd200 coding upstream 79507 68227272 ~ 68253241 (-)
LOC110520467 LOC106586653 coding upstream 130807 68278572 ~ 68292750 (-)
LOC110520470 LOC106586656 coding upstream 307696 68455461 ~ 68460579 (-)
LOC110520471 NA coding upstream 436707 68584472 ~ 68586742 (-)
G289985 NA non-coding downstream 31845 68093038 ~ 68093758 (-)
G289841 NA non-coding downstream 68318 68056985 ~ 68057285 (-)
G289836 NA non-coding downstream 75074 68050232 ~ 68050529 (-)
G289835 NA non-coding downstream 76949 68048367 ~ 68048654 (-)
G289826 NA non-coding downstream 87200 68038141 ~ 68038403 (-)
G290064 NA non-coding upstream 75683 68223448 ~ 68225334 (-)
G290137 NA non-coding upstream 120688 68268453 ~ 68268667 (-)
G290144 NA non-coding upstream 137388 68285153 ~ 68285759 (-)
G290154 NA non-coding upstream 159285 68307050 ~ 68307310 (-)
G290155 NA non-coding upstream 159636 68307401 ~ 68307710 (-)
G289653 LOC106607871 other downstream 239371 67883752 ~ 67886232 (-)
G289678 NA other downstream 492110 67626832 ~ 67633493 (-)
G288578 NA other downstream 1282722 66842671 ~ 66842881 (-)
G287112 NA other downstream 2545108 65579791 ~ 65580495 (-)
G287042 NA other downstream 2678320 65446825 ~ 65447283 (-)
G290542 NA other upstream 431338 68579103 ~ 68580707 (-)
G290567 NA other upstream 478567 68626332 ~ 68647620 (-)
G290598 NA other upstream 562602 68710367 ~ 68717385 (-)
G290602 NA other upstream 574043 68721808 ~ 68724914 (-)

Expression


Co-expression Network