XLOC_021721 (si:ch73-206d17.1)


Basic Information

Item Value
gene id XLOC_021721
gene name si:ch73-206d17.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 26491931 ~ 26502521 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043109
CCAAAATCAAACCTTATGCTTACTGATTGTTCCCTTTACCGAAAGTGCTCTGgatcctttttttaaatttctcttCTACCTTATTTTTCCAACAAGGTAAGGGTGCTAAACACTCACATCAAAAATATGTGTATTCATTGTGACTTTTGTTTTAGCTCTAATAACATATGTTCTGTGTTTTTGTAGTTCAAATGATTGTTCTAATGTCTTTTTTCAAATCAGTTTTGGAAATGTTAGAGAGACACCCACATGGCTGTCCAAGCCCAATGCAACATCTCCTCTGGCTCTGACCCAGCCTGTTATGATGAAGGATCAGGTCCCCTCGCGGTCATTATTATTCCAAGCTTGCTGGCTCTCAGCACCCTGATTGTTGTGTCGCAGATAATATGGAGCTTTGTTACCAAAAGATCTTCAGCTCAGAAAATCACAAGCTCATCTTCAAATGTAAATGAAAGGGAACATGTCCAACTGGATGCAGGGATTGGAAGCTTACGGCCTGCAAATGTTCTGGGTCCATTAGAGCTACCTGTTCAGTGCACCCTGGAGGGAGTGGAGGTGCTTCAGATGGGACGTTATGGACCAATCTGCATGGGTCAGCTAAAACAAGACAACACATCCACTGCTGTTATGATTAAAACTCTTAAAGACAGATCAACTCAATCGGAGTCTGCAGAATTTATGGATTTGGTCCTCTTCCATGCAGCAGTGAGCAAACATGAGAATATAGTCAAGCTGCTTTTCTGCCAGACACGCCGGACGCCCATGTACCTGCTTTTGGAGGCAAGCGTTCCAGGAAACCTCTTGAATTTCCTCTGGAGTCTTCGAGAGGACAGGTGTGGTGAATCTTCAGTGTTTTCAGAAAAATCAGTCTTTCTAGTAGCTAAGCAGATAGCAGCGGGTCTGGACTATCTACACTCCCACCACAGAGTAATTCATGGGGATGTTGCAGCGAGGAACATGTTGATCGGTTCAGCGTTCTCTGTCAAGGTCTCTGGATTGGATTTTGCTTTTGAGAGCAGACAGAAGAAAAAAGTGGACAGGGAACAAGAAGCCAACGTGCCGGTAAAATGGCAGGCCCCGGAACGGATGATGAGGCTCCCTCTAACAGACAGGAGTGATGTATGGTCCTTTGGAATCCTGCTTTATGAGATGATAACCCTGGGGTCTCCTCCTTATCCTGACCTGGACCCGTCTGAAGTGCTGCCCAGAACTTTAGCCCATTACCGGATGAAAAGACCAGAAAACTGTGGAGCTCCATTGTTTGACTTAATAAAGTACTGCTGCATGTGGAACTTCAAGGACCGGCCAGTTTATTCTGCCATCATTCGGCTTCTGGACTCATACAGCTACTTTGCTGACACAAAACCACTTTGCTCTGAAGTGCAAATAGACGTCAGTGAATATAAGAAGAAAGCAGGACTGCCATCATGAACTCTACACATGTCCTGCTCATTTCTATGGTGCCTGGCAGAACTAAGTTACCCTCAGGTCATTTCAAACATATAGgaatttgttcatcttcagaacacaaatatagatttatttaaggcaagacaagtttatttatacagcacatctcatacacaatggtaatccaaaatgctttacataaacaagaataaaagaaacataaaatacaaagtataaatatgattaaaggaaattattattaattatttatttttttaatttcaatttaaataaaatgtattttaaaggaatgaaaaagaaaagaaagatataacagtgtgatctgtcggatgtagcacagtgttcatttagtaaaggcacagctaaacagatctGTTTTAAGTCTATTTAAATGCGCCTATTGTTGGAGCacatcatttctggaagctgatttaaCCACAGCTAAGAAGCACAcattggaaataggctcattttacaacaccCCTAGAGACACCCTACTATTTTTAAACCCATTCAGGCgaagcacttttaacttagcttagcataaatcattgaatcagattagaccattagcatattgcttaaaaatttgaaaatgtaCAGATGAAAATCAACAAttgcaattttaatagtttattcctTGATTATCATGCCCGAATGAGAGTACAATTGCTACCCATATCGGCTTAGAAAATAGCAACTGTTAATtttccacctttttttttttttgacattggacttttttattatgattttaaacttttatacCATAAAGAACAAAAAATTCACTATACAAAATCAACTTTGaggaaaataatgtaaacaaattataataaaaatattaacagaacaacatttataacaaatgtaaaatagaaaataatactaCAGACAAAATGACAGCCCTTCAATTTTTCCTTTACATGCTCTCCGAATACTGTAAAAAGCTACCCCATTTCTAATTGAAAGTATGGGTGGAGTCCTGAAGTCTTGTCAACATATGTTCATATGATAAAGTAGAAGTCGTCAGCTCAATCCATTCTTTAAAAGAGGGAGTATCTGAGTTCTTCCAATTTCGCAGCACCAGTCTCACAGCCATAATACATCCTGCAACGACTAGCCCAGCCTGTGCTTTAGATATTCCCTTCTGTAGAGCGGATGCATCACCAAGAAGACAAACTCATGGTGAATAATGTAAAGGTTATCCCAGCAATTTCTCAAGGTTTTGAATAACTCTTGTCCAGAATAGAGCCACCAAATGACAGTTGCACATTAAATCTGAAAAGGTGCCCACAGAATGACCACACTTCCAAAAGTGATTATTTTTCATTAATCCTAGCAGTCTTACTGGGGTCcagtaatattgtttaattatcttGTAATGTACGAGTTATACCATGCATAGCATCTCTCACAGGACAGCTTCCCATTCACCATTTTTAAATTCCACCTCCAAATCTTGCTCCCAAACAATTGTTAAATGATTCTTTTTTCCGTACATGTCATTTGTAGCAATTCTATACAGAAAGGATGTAGTTTGCACTGACTTTGACATATTTAGAAACCCTAATAAAACACTTTCTTCTGCTCCTGCCTTGAATCCAACAGATCTTATACTACtgcaattgtatttatttgcCAAAACCCTGTTTATCTAATAATTTGAACTTGGCTTTCAAATCCTGAAATGAATACAGTGCCTTCTGTCCATATACTGTAAATCATCAATTGTTTTTAGGCCTTTTTTTACACCAATCATTCTAATACACATTTTTCTCTCCTGTCTTAATAGCAGGGTTATTCCATAATAAAGAATAGCCTTGTTTATAATGGGACAAATTAAATATCTTATAAATAtcttatgtatttttttccaaaCCTGCTGTAAGTGTTCCAATACCATTTTCCATCAATCTTAATATACAATGCAACAACAGAAGGgttaagttttaaataataaaattattattattattttttaaacaagatgctacagtctaatctgattcaatgatttatgctaaactaagctaaaagtgctaaagcaaacctggagattggctgaatggattcaaaaattgcTTAACTCtagaggagttgtaaaatgagcctattttcaataAAAGTGGAGCATTCCTTGAAAGATTTCTGTCCCTCAGATAAAAGTCTGTTCGCTCAAAACTCTTGATTCTTCAAAACTTCAAGAAAGAGGTTCAGAAATATACATGTGAACAGAGCAGTTTATTACAAGTCCTCTGTGTCACATTAAATTTATATAATGAACAGATTTCATTTAGGTCTTATCTGAAGATGAACACATTTATTATGGGTTTAGATaagaatgacatgagggtgagtaagcaatgacagaattaaaattttgggGTGACTTAACCCTTGAAAGCTGCAATAAGCTATTTATTTGGCTTAGTGCACAAGATGGACTTCAGCAgatgaaaataaacacacatcagAAATATAACTTTACAAATAAGCATGACAATCAGGCAAGACTTTGGGCCTGTGATGATGATTTTGCTGTGGTTTACAGAACTAAATATTCTTGTGTCATCTTTGTTCATTTATCATTTTCTTTTGCTTCAGCTGGTAAACCACTGCACCAACAAACACAGATAATTACTGGAGCAGCACTGTACACTTTCCCCCCCTTATTGCAGCTTCTAATatgctacagtatatatatttttatcacaaTATTGACCTAAGCTGCAAAAAAGGGATACTTTAACTGGTATGATAACAAAAAGTCTATGTTTTGtgctttattatatataaacgttcagagtaaacaaatgtttcaatcTAAGTTGcaaaatgattataaaattacagtatgtaacactttacaataaaatcTTATTAGAAGTTAATAGTTAAGCCATTGACATCAATATTGAGAAGTGTTATCagtgtattttaattaactaatgttaataaatacagcCTTAATGTAACATGTTATTGAATGTTAAAGTTAACGTTGAAGGCCTATAAAGAATAAGAATGTTTTCAATCAATATGTTATGCAGTATGCTACTGTAGTACACTGTACAAATGGCTATGATTACAATATCATGCATGCTTTTTATTggaatatatattgtatattgaatATTGATTCAGCACATGTCTGCTGTATTTTATCTAGCTGCAAGGGACAAGAAAAACTAATATTAGTCCAAattaaagaaatacataaaaattaaacaaaactatattgataaaataattaacatgaataaatgtgatgaaaaaaatgaCTATGTTGATAGTATAAACGGGTGCTTTACACAAGAAATTTCATattcttttacattttacaatgtgTGTGCCTCGCAGTGTAATCATATTTCAGTGTCAGTCGCAACTATATATTTGAAAACCCTGTTTTAGTCTGAACAAGCAACGTCTCCTTCACTAGAGGGCGCCATAATTCTCAGAAATGTCAATCAGAAATGAAGATTTGAGTCATGAAACCCCTGAAATTTGGTGCATGCCATATGGGCAGCTAGTggttcttcccatactgataaacttccggtgaacggttaatgtgactccccccccccccattttatatggttccttttacagcatcgatattgtaatgtaattaaaatacattcggttaaatagactttggcattcatttagttgctcaagcgtaaaacaagacaaaaagccgtttactcgcaggCGCCCGTCAAAATTGGCAGGCAgtagaagctccattgaatatactggggtaaaacaaattcatattttaattaaaaacatggcaggggaaaatgtaatttaatgcaatgtATGTTGTAGAATCTGAGACCCATTATATAACGGATATAagtcagccagtggagatcactgatttctaaagaaaacagatcttaaacgtggcgaTTTTATAATGGCattcagttcaccggaagcgcttgacccaggttactggcaaactaaaagtcctttagcatacttcTGCATATTGAAAATGATCATCGTTAATAGATGATTGgtacaaatgtaaacaaaataatattataaaatttcaATATCTTTGTCATTCATAATTTTAGTTCTGGATTAAAGTGTTGGGTGATTGATgctatttatttgatatataatATTCTACATTTTGATACTTTTTGGTTTGTTAGTAGCAGTCTAAAAAATCTAATGAGAATATTTTTTGAGAGTTTATTcatttggaatatatatatatcaaaaattattatccctcttgtgaaattcaaattttttcaaaaatatttcccaagtgctgtttaaggCAAAGAAGCTTATTTCCAAcctaatttgtaattatttatttcctATTTACTAGTTTGTAATCATTATttgcttttgtc
>TCONS_00043110
aaatttctcttCTACCTTATTTTTCCAACAAGTTTTGGAAATGTTAGAGAGACACCCACATGGCTGTCCAAGCCCAATGCAACATCTCCTCTGGCTCTGACCCAGCCTGTTATGATGAAGGATCAGGTCCCCTCGCGGTCATTATTATTCCAAGCTTGCTGGCTCTCAGCACCCTGATTGTTGTGTCGCAGATAATATGGAGCTTTGTTACCAAAAGATCTTCAGCTCAGAAAATCACAAGCTCATCTTCAAATGTAAATGAAAGGGAACATGTCCAACTGGATGCAGGGATTGGAAGCTTACGGCCTGCAAATGTTCTGGGTCCATTAGAGCTACCTGTTCAGTGCACCCTGGAGGGAGTGGAGGTGCTTCAGATGGGACGTTATGGACCAATCTGCATGGGTCAGCTAAAACAAGACAACACATCCACTGCTGTTATGATTAAAACTCTTAAAGACAGATCAACTCAATCGGAGTCTGCAGAATTTATGGATTTGGTCCTCTTCCATGCAGCAGTGAGCAAACATGAGAATATAGTCAAGCTGCTTTTCTGCCAGACACGCCGGACGCCCATGTACCTGCTTTTGGAGGCAAGCGTTCCAGGAAACCTCTTGAATTTCCTCTGGAGTCTTCGAGAGGACAGGTGTGGTGAATCTTCAGTGTTTTCAGAAAAATCAGTCTTTCTAGTAGCTAAGCAGATAGCAGCGGGTCTGGACTATCTACACTCCCACCACAGAGTAATTCATGGGGATGTTGCAGCGAGGAACATGTTGATCGGTTCAGCGTTCTCTGTCAAGGTCTCTGGATTGGATTTTGCTTTTGAGAGCAGACAGAAGAAAAAAGTGGACAGGGAACAAGAAGCCAACGTGCCGGTAAAATGGCAGGCCCCGGAACGGATGATGAGGCTCCCTCTAACAGACAGGAGTGATGTATGGTCCTTTGGAATCCTGCTTTATGAGATGATAACCCTGGGGTCTCCTCCTTATCCTGACCTGGACCCGTCTGAAGTGCTGCCCAGAACTTTAGCCCATTACCGGATGAAAAGACCAGAAAACTGTGGAGCTCCATTGTTTGACTTAATAAAGTACTGCTGCATGTGGAACTTCAAGGACCGGCCAGTTTATTCTGCCATCATTCGGCTTCTGGACTCATACAGCTACTTTGCTGACACAAAACCACTTTGCTCTGAAGTGCAAATAGACGTCAGTGAATATAAGAAGAAAGCAGGACTGCCATCATGAACTCTACACATGTCCTGCTCATTTCTATGGTGCCTGGCAGAACTAAGTTACCCTCAGGTCATTTCAAACATATAGgaatttgttcatcttcagaacacaaatatagatttatttaaggcaagacaagtttatttatacagcacatctcatacacaatggtaatccaaaatgctttacataaacaagaataaaagaaacataaaatacaaagtataaatatgattaaaggaaattattattaattatttatttttttaatttcaatttaaataaaatgtattttaaaggaatgaaaaagaaaagaaa

Function

symbol description
si:ch73-206d17.1 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-143 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000086159

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043109 False 5816 mRNA 0.35 9 26491931 26502521
TCONS_00043110 True 1547 mRNA 0.42 10 26491995 26498442

Neighbor

gene id symbol gene type direction distance location
XLOC_021720 ptpn22 coding upstream 311392 26142613 ~ 26180539 (+)
XLOC_021719 si:dkey-78k11.4 coding upstream 389136 26102028 ~ 26102795 (+)
XLOC_021718 atp6ap1b coding upstream 397753 26079467 ~ 26094178 (+)
XLOC_021717 itih6 coding upstream 435859 26039524 ~ 26056072 (+)
XLOC_021716 pfkfb1 coding upstream 453962 26017227 ~ 26037969 (+)
XLOC_021722 NA coding downstream 88603 26591124 ~ 26625133 (+)
XLOC_021723 zgc:158263 coding downstream 230711 26733232 ~ 26751278 (+)
XLOC_021724 CT573349.1 coding downstream 426222 26928743 ~ 26928858 (+)
XLOC_021725 cacnb3b coding downstream 443908 26946429 ~ 26959206 (+)
XLOC_021726 rnd1b coding downstream 476653 26979174 ~ 27006062 (+)
XLOC_021714 AL845287.1 non-coding upstream 496790 25995027 ~ 25995141 (+)
XLOC_021691 BX957326.2 non-coding upstream 1931058 24556455 ~ 24560873 (+)
XLOC_021689 NA non-coding upstream 1999894 24483312 ~ 24492037 (+)
XLOC_021687 CR925709.3 non-coding upstream 2343160 24148055 ~ 24148771 (+)
XLOC_021686 NA non-coding upstream 2351521 24133781 ~ 24140410 (+)
XLOC_021731 NA non-coding downstream 1006346 27508867 ~ 27516273 (+)
XLOC_021738 NA non-coding downstream 1368218 27870739 ~ 27872705 (+)
XLOC_021742 NA non-coding downstream 1637238 28139759 ~ 28277430 (+)

Expression


Co-expression Network