si:ch211-214p13.7


Basic Information

Item Value
gene id si:ch211-214p13.7
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68206330 ~ 68208674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975020.1
ctctcactctctctctctgttcttcctcactctctcatACTGTCAGAGCGGGGGCTGAAGCAATGCCACTTGAACTTTAAGTGCAATAGAACAGAGTTGTCGTGCCAACCGGCGCCTGTGCACCGTGACCTCAACACCTGGTATGTTCTGAGCGTGCTCCAACTCCGGCTCCTCGGATCAGCTAACTCACCATGGGAAACTACATGTGTGGAACACTGAGGAAGAAGAAAAATGAAGATGAAGATAACGGTGATAGTCATAGCAGCCCAGACAACAAGGAAGAAGATGTGACATATGCCACCATCGACCATAACAACACCAAGACAACAGGATTCATCGTAGATTCCGGAGATAACGATTGTGACTACGCCCTCGTTAACCTTCCAACTGGCCCAGCCCACCAGTCGTCAATCAAGGAAGACTGCTCAGACGACTATGTCCTTATGGGCTAACCTCatggacaatgtgtgtgtgtgtgtgtgtgagatgacaGAGGTCATGTGAGTAGGCAGATAACGGAGATGCAAGGTGGACAAGGGCTGGGGCAAGCTCAATAGCACCTTTCTGAACCAAAGGAACAGATATGATGCCTGTGACAGTGCCTACAAACTCAACTTGATGCAGTGTGTGGTTCACTAATTACAGGGGCTTGCCAAAGTATTCACTCCACTTggcatttttccaattttgttgccttacaacctggaattaaaatgtattttggggggtttgtatcatttgatttacacaacatgcctaccactttgatgatgcaaaat
>XM_036975019.1
gtgctctctctctctcactctctctctctgttcttcctcactctctcatACTGTCAGAGCGGGGGCTGAAGCAATGCCACTTGAACTTTAAGTGCAATAGAACAGAGTTGTCGTGCCAACCGGCGCCTGTGCACCGTGACCTCAACACCTGGTATGTTCTGAGCGTGCTCCAACTCCGGCTCCTCGGATCAGCTAACTCACCATGGGAAACTACATGTGTGGAACACTGAGGAAGAAGAAAAATGAAGATGGTAAAACATACTACTTTTGTAAAAGCATGTCACATTTTCTTGTTATACTTCAAAGTATGTGTTATAATTTAATCAATACATTGCTACATGTCCGCTTCTTTGCAGAAGATAACGGTGATAGTCATAGCAGCCCAGACAACAAGGAAGAAGATGTGACATATGCCACCATCGACCATAACAACACCAAGACAACAGGATTCATCGTAGATTCCGGAGATAACGATTGTGACTACGCCCTCGTTAACCTTCCAACTGGCCCAGCCCACCAGTCGTCAATCAAGGAAGACTGCTCAGACGACTATGTCCTTATGGGCTAACCTCatggacaatgtgtgtgtgtgtgtgtgtgagatgacaGAGGTCATGTGAGTAGGCAGATAACGGAGATGCAAGGTGGACAAGGGCTGGGGCAAGCTCAATAGCACCTTTCTGAACCAAAGGAACAGATATGATGCCTGTGACAGTGCCTACAAACTCAACTTGATGCAGTGTGTGGTTCACTAATTACAGGGGCTTGCCAAAGTATTCACTCCACTTggcatttttccaattttgttgccttacaacctggaattaaaatgtattttggggggtttgtatcatttgatttacacaacatgcctaccactttgatgatgcaaaat
>TU328904
GTGCTCTGCTTCCTTCACAACTATCTCACTGTAGTTGATCTCCTTTGTAAAGAGTCTGTAATCAAAGTGTGCATGACATTAATGTTGATCTCAGAGAAGACCAGGCATTTGGCCTCAGAATACATATACAAGCATCTGTACAAAGATTCCTGTTGCAGCAATAGTGATGAGTAGACTTGGCCTGCCTGGTACCATCTTAAAGGAAGTTCTTTAAAAATGTACTTTGCAGTGTGGTCAAGTCTTTATTAGCAGTACGTTTTCATTTGAAGTGCACATATTGTATCATCGCTCTCTCCTATTTCTGTTGGGTGAGCAATTCAATGTACACTTCTCTGTTGTAAGACTGAGTAGTTAATTCAATGTACACTTCTCTGTTGTAAGACTGAGTAGTTAATTCAACTTACACTTCTCTGTTGTAAGACTGAGTAGTTAATTCAACTTACACTTCTCTGTTGTAAGACTGATGAGTGAATTCTAAAGTTTGTCCTCTGGTTTATTCAGGAAGAAGAAAAATGAAGATGGTAAAACATACTACTTTTGTAAAAGCATGTCACATTTTCTTGTTATACTTCAAAGTATGTGTTATAATTTAATCAATACATTGCTACATGTCCGCTTCTTTGCAGAAGATAACGGTGATAGTCATAGCAGCCCAGACAACAAGGAAGAAGATGTGACATATGCCACCATCGACCATAACAACACCAAGACAACAGGATTCATCGTAGATTCCGGAGATAACGATTGTGACTACGCCCTCGTTAACCTTCCAACTGGCCCAGCCCACCAGTCGTCAATCAAGGAAGACTGCTCAGACGACTATGTCCTTATGGGCTAACCTCatggacaatgtgtgtgtgtgtgtgtgtgagatgacaGAGGTCATGTGAGTAGGCAGATAACGG

Function

NR:

description
uncharacterized protein si:ch211-214p13.7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975020.1 False 779 mRNA 0.47 4 68206330 68208663
XM_036975019.1 False 895 mRNA 0.45 3 68206330 68208674
TU328904 True 905 TUCP 0.40 2 68206590 68208395
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Neighbor

gene id symbol gene type direction distance location
nr1i2 nr1i2 coding downstream 58565 68125603 ~ 68147765 (-)
LOC110520458 LOC106586647 coding downstream 289472 67900356 ~ 67916858 (-)
LOC110520455 LOC106586642 coding downstream 324912 67836705 ~ 67881418 (-)
LOC118944713 LOC106592868 coding downstream 419481 67776411 ~ 67786849 (-)
LOC110520454 LOC106586643 coding downstream 500109 67685050 ~ 67706221 (-)
LOC110520466 cd200 coding upstream 18598 68227272 ~ 68253241 (-)
LOC110520467 LOC106586653 coding upstream 69898 68278572 ~ 68292750 (-)
LOC110520470 LOC106586656 coding upstream 246787 68455461 ~ 68460579 (-)
LOC110520471 NA coding upstream 375798 68584472 ~ 68586742 (-)
LOC110520474 LOC106586664 coding upstream 1051829 69260503 ~ 69277276 (-)
G289985 NA non-coding downstream 112572 68093038 ~ 68093758 (-)
G289841 NA non-coding downstream 149045 68056985 ~ 68057285 (-)
G289836 NA non-coding downstream 155801 68050232 ~ 68050529 (-)
G289835 NA non-coding downstream 157676 68048367 ~ 68048654 (-)
G289826 NA non-coding downstream 167927 68038141 ~ 68038403 (-)
G290064 NA non-coding upstream 14774 68223448 ~ 68225334 (-)
G290137 NA non-coding upstream 59779 68268453 ~ 68268667 (-)
G290144 NA non-coding upstream 76479 68285153 ~ 68285759 (-)
G290154 NA non-coding upstream 98376 68307050 ~ 68307310 (-)
G290155 NA non-coding upstream 98727 68307401 ~ 68307710 (-)
G289653 LOC106607871 other downstream 320098 67883752 ~ 67886232 (-)
G289678 NA other downstream 572837 67626832 ~ 67633493 (-)
G288578 NA other downstream 1363449 66842671 ~ 66842881 (-)
G287112 NA other downstream 2625835 65579791 ~ 65580495 (-)
G287042 NA other downstream 2759047 65446825 ~ 65447283 (-)
G290542 NA other upstream 370429 68579103 ~ 68580707 (-)
G290567 NA other upstream 417658 68626332 ~ 68647620 (-)
G290598 NA other upstream 501693 68710367 ~ 68717385 (-)
G290602 NA other upstream 513134 68721808 ~ 68724914 (-)
G290713 LOC106586659 other upstream 637937 68846611 ~ 68850854 (-)

Expression

si:ch211-214p13.7 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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si:ch211-214p13.7 Expression in each Bioproject

Bar chart with 20 bars.
si:ch211-214p13.7 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network