LOC110504539 (LOC106586655)


Basic Information

Item Value
gene id LOC110504539
gene name LOC106586655
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68324426 ~ 68365482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975022.1
ATGGATTTACGAACACTGAACGAGACCTCTACGTTCTTGGAGTGTGTGGGAGCGCAAGGCGCTGCGTCAAACAGAACAATGAACGTCAGTCTGGGACTCACAAACATCACCACCTGTGGAAACGAGTCCGTGGTGCTCAAACCGCAGCATGTCAAACAGAAAGAGGTGGACTCTCTGCGTATCCTGCTCTATTCGGTCATCTTCCTCCTCAGTGTGTTGGGCAACCTGCTCATTATCGTGGTCCTGGCAGTCAACAAGCGCATGAGGACGGTCACCAACTCCTTCCTGCTGTCCCTGGCAGTCAGCGACCTGATGATGGCCATCTTCTGCATGCCCTTCACCCTCATCCCCAACCTCCTGGAGGACTTCATCTTTGGAGCCGCCATGTGCAAGATAGTGGCCTACCTCATGGGTGTATCCGTGAGCATCTCCACCTTCAGCCTGGTTGCCATAGCGATCGAGCGCTACAGCGCCATCTGCAACCCGCTGAAATCGCGGGCGTGGCAGACCCGTTCCCATGCCTACCGGGTGATCGCCGCCACCTGGCTCCTGTCCTTCATGATCATGACCCCCTACCCCGTGTTCAGCCACCTGAAGCACGTTCCCTTAAAGGACAACATCACCATCGCACGCATGTGTCGCCACATCTGGCCCTATCCGGAGGTGGAGCAAGCctgGAACATGATGTTGCTGCTTACGCTCTTTGTTGTTCCGGGGGTGGTGATGATTGTGGCCTATGGACTCATCTCCAGAGAGCTGTACCGGGGAATCCAGTTTGAGATGGTTCAGAAGACATCATCCCCCGGTCTAAAGAACGGCCTGACCACCACCGGGGCTTGCGGCAGCGACGACGGTGATGGATGCTACGTCCAGCTCGCCAAGCGACCGCGCTCCATGGAGATGTCCACTCTGACATCATCGACGACAACCGCGTCCAAATTGGAGCGTCCCCGCAGCAACACCTCGGAGGCCAAGCTCTTGGCCAAGAAGCGCGTGATCCGGATGCTGGTGGTGATTGTTGCTCTGTTCTTCCTGTGCTGGTTGCCCCTCTACTGCGCCAACACCTGGAAGGCTTTCCACCCCGTCTCTGCCCGCCGTGCCCTCTCTGGTGCCCCCATCTCCTTCATCCACCTCCTGTCCTACACCTCGGCCTGCGTTAACCCCATCACCTACTGCTTCATGAACACACGCTTCCGCACTGCGCTGCTCGCCACCTTCGCCTGCTGCTGCCGCCCGCCCTGCCGACACAGACGCCACGGGCTgcgggatggagaggaggacgcCATGGCTATGGGGGTGTCCATGTCCAAATTTAGTTACACCACGGTCAGCACTATGGGGACGTGCTGAGGGAGGAACCATTGACTGACTGGGGGACG

Function

NR:

description
PREDICTED: cholecystokinin receptor-like

GO: NA

KEGG:

id description
K04195 CCKBR; cholecystokinin B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975022.1 True 1379 mRNA 0.58 5 68324426 68365482

Neighbor

gene id symbol gene type direction distance location
si:ch73-390b10.2 gpr89 coding upstream 46011 68261414 ~ 68278415 (+)
LOC110520465 btla coding upstream 103010 68216285 ~ 68221416 (+)
si:ch211-214p13.9 cd200r1 coding upstream 146653 68173648 ~ 68177773 (+)
LOC110504531 LOC106586650 coding upstream 209749 68058115 ~ 68114677 (+)
LOC110520463 LOC106586649 coding upstream 286470 68002305 ~ 68037956 (+)
LOC110520472 LOC106586659 coding downstream 481026 68846508 ~ 68850315 (+)
LOC110504548 NA coding downstream 489290 68854772 ~ 68858737 (+)
LOC110504559 LOC106586663 coding downstream 577053 68942535 ~ 69172271 (+)
LOC110520475 LOC106586671 coding downstream 1104294 69469776 ~ 69595798 (+)
LOC110520478 LOC106586673 coding downstream 1260273 69625755 ~ 69635303 (+)
G290094 NA non-coding upstream 31416 68290671 ~ 68293010 (+)
G290082 NA non-coding upstream 65760 68258430 ~ 68258666 (+)
G290078 NA non-coding upstream 67671 68256461 ~ 68256755 (+)
G289883 NA non-coding upstream 99120 68223725 ~ 68225306 (+)
G289933 NA non-coding upstream 123517 68200681 ~ 68200909 (+)
G290110 NA non-coding downstream 6461 68371943 ~ 68372280 (+)
G290224 NA non-coding downstream 30545 68396027 ~ 68396383 (+)
G290241 NA non-coding downstream 41721 68407203 ~ 68407433 (+)
G290246 NA non-coding downstream 43859 68409341 ~ 68409556 (+)
G290277 NA non-coding downstream 79783 68445265 ~ 68445490 (+)
G289517 NA other upstream 562003 67761737 ~ 67762423 (+)
G289486 NA other upstream 642304 67678862 ~ 67682122 (+)
G289455 NA other upstream 692216 67625353 ~ 67632210 (+)
LOC110505416 LOC106586647 other upstream 804456 67519326 ~ 67520162 (+)
G291327 NA other downstream 1329913 69695395 ~ 69695836 (+)
LOC110520485 dynlt3 other downstream 1496578 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 other downstream 1553700 69915810 ~ 69923807 (+)
G291461 NA other downstream 1584185 69949667 ~ 69952168 (+)

Expression


Co-expression Network