LOC110520474 (LOC106586664)


Basic Information

Item Value
gene id LOC110520474
gene name LOC106586664
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69260503 ~ 69277276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597817.2
AGCCCTCTCCACCACCAATGAGCCCAATAAGTAGGCGGATTTGCAGGTACGCCCCGTCGGTTTGCAGCGACCCAGTGTCAGTGTGTGAATTTTTTTCCTCCCCTTCTCTTTTTTTGTAACCAAAGCTGGATGTGTAGAACGTCACATATTGTTTCCCTCTTCACTCCGGTCACTTTAGCGATATGGGTTATTTACTGTTAAACAGCTACAGACGCCGAACGCACAGCCGGCGCCTGGAGTGAAAGTGTCTCTGAGAGATACGGACTATACAGAGTTTCTCTCCAGCCTTCGATAAGTGAGGATATAACAACAGGTTAACGAAAGTGAGATTAGTTTTTTTAAAGGACGATAGAATGGCGAGTCCTCCAAATACTGGGGAAGGACACTTGTTATCCAACGCGAACATTAGTAACACCAAGATTAAGAAATGTGGATACCTCAAGAAGCAGAAGCACGGACACAAGCGCTTCTTCGTTCTGAAGGAACCGGGCGAGGGCTTCCCTGCCCGGCTGGAGTACTACGAGAGCGAGAAGAAATGGAAAAACAAGTCAGCGGCAAAGAGGGTTATACCTCTTGACTGCTGCCTCAATATCAACAAGAGAGCTGACGCCAAACACAAACACCTTATCGCCCTCTATACCAAGGACGAATATTTTGCCGTGGCGGCAGATAATGAAAAAGAGCAGGAGAATTGGTACCGAGTCTTAACGGATTTAATGAGCGAGGGGAAAGTGTACTCCGACGGCTCCGCTTCCAATTCCGCTTCTTCGCTGGTGGGGTTTGATGAGGCGAACTACGGGATGATTACGCCGGTAACTGCCGCGTATAAGGAGGTATGGCAAGTGAACCTGAAATCCAAAGGGCTGGGGCAGAGCCGGAATCTGACCGGGGTATACAGACTGTGTTTATCCAGCCGGACTATCAGCTTCGTAAAGCTCAACTCGGATGTCGCGTCCGTCAGTTTACAGCTGATGAACATTCGGAGATGCGGGCACTCAGAGAGCTTTTTCTTCATCGAGGTCGGACGGTCAGCAGCCACGGGACCAGGCGAGCTGTGGATGCAGGCTGACGACTCAGTGGTGGCGCAAAACATCCACGAGACTATATTGGAGGCCATGAAAGCCATGAAGGAGCTGTCAGAGTTTCGGCCGCGCAGCAAGAGCCAGTCTTCAGGCACCAACCCCATCTCCGTGCCGACCCGGCGGCACCTCAACAACCTTCCTCCAAGCCAGACCGGGCTCCAGCGGCGGTCGCGCACTGACAGCATGGCCACAACTTCCCCGGTTAGTAAATTTACCTCCTGCCGGATACGCACTGCCAGCGAAGGAGAAGGCACCATGGTGCGCCCCATGTCTGTGAACGGGAGTCCCCTCAGCCCCGGTATTCAACCGAACCTATTAGGGAGATCAAACACCATTACAGCCCGGCCCAGCCGGACATTTGAATCCTCTTCCCTCCAGCACAGTAAGTCCATGTCCATGcctctgtctcactctccacCCACAGCCACCCCCAGCCCTGTTAGCCTGTCCTCCTGCTCGGAGAGCAGTGCTCCTTGCCCCTCCAGCTGCAGTGCCTCGGTCTCCCCCAGTGATGGGGGCTTCATCTCCTGTGATGATTATGGCTCCAGCCCTGCAGGCCTGCACCTCACCCTCCGCAGTAACACCCCAGAGTCCCTGAGGGAAGACACACCCCCTTCCCGGGAAGGCAGCAACCTGCACGGCTACATGGTGATGGAGAGACAGAACGGTTACCGCCGGTTACCAGAGCTGGACAAGGCATACCGGAAACGCACATACTCCCTCACCACCCCGCGCCAGCACAGGGCACCGCCCCAGGTCTCCTCTGCCTCATTGGACGAATACACGCTCATGAGGGCCACCTACACCAGTGGTTGCCAATCGGTTCGCAGCTCTCACATGGCTTCCCCAAAAGTGACCTATCCCGAGGACTATGGCGATGTCCAGATAGGCTCCAACGGTCACCTAGGCGACAGTGGCTACATGCCCATGACTCCAGGTGTGGCCCCTCAGACAGCGGGGGTCAAAGGTAATGCTTACATGCCCATGAGCCCCATGTGTGTGTCGGCCCCAAAGCAGATCATCAACCCCCGCTCTCACCCCTCTCCAGCTGGGATGGGTCCCCATACAGATTCCCCTGGCAGTGTGTCTCTGGAGGACAGCGGCTACATGAGGATGTTCTGCGGGGCCAAGATGTCTGTGGACAGCTCAGATGAGAAACTCACCAATGGGGAGTACCTCAACATGTCCCCTGTGGACCCTCTGGTGTCCTTCACCCCCTCAGAAGACTTCCTCACAGACACTACCCCCCAGCCTCACCCTCACCACAGACAGCCTTACTCCATCAGTTCCCTGCCCCGCTCTCTCAAAGCCCAGCCCCAGAGGAACGGTGTCACAGACACAGACCAGTACGTGGTGATGAGTCTACAGAGGCAGAGGATAGAAGAGGAGTCCAACTACTGTCCCATCTCACCAGTCTCCATCGGTACGCCCCCCACCAACACCCACTCCTCAGCCCCCTCGATCCTCAGAGCCGGCAGGGTGACCCAGGAGGGGGGTCTGGTCCACAGGGGGAGGGTGAGTCGACCTACCCGGCTCGCCCTTGACTCTCTGAGGACACTGCCCTGTATGAGCGAACACCCTCTCCCCTCTGAGCCCAGGAGTCCCGGGGAGTACATCAACATAGACTTTGGCAACGCCACACGATACCCGCCTGTCTCTACCACGACTGAAAGCTCTGCTTCATCGCTGGGCTCGGTGGACGGGCCGGCGAGGAGTTCCCCGCCACTCTCCGAATACGTCAACATCAACATCAGCTCATGCTCTTCCAAACACAGGGATTCCCCTTCTTCAATAGGGCGCATGGAGCCGAGTCCTGTGCTCCTCGTGTGTCCCAGCCAGCCTCAGAGAGAggatcagagggagagagaggaggagtaccagagggagagagaggaggagagagtcgtAGTGGAATATCCTCTCCAAAAGCGTGTGAGCCCTGTGTGCCCGGTTGGAGCTGTAAAAGACGACTACACTGAGATGACCTTCAGTCCTACCaacccctctgcctctctccctgcctctctgtgCCCCTCTGACTCCACCACCCCCCTGCCTACCAGCCCCTCGTCCTGCATCCAGAGACTCACCCTGGGGGGAGAGGGCGTAGTGGTGGTCCCCCCTGCCCCGGTGGAGTCCTTCCTCCTGGGGGGTCCCTCCACCCCACCCGTCAGCCCCCCTGTCTGGGTTAAGGTGATCCGGGCTGACCCCCAGGGTCGCAGGCGCCACAGCTCCGAGAccttctcctccaccaccacagtAACGCCAGTGTCTCCATCGTTCGCCCACGATGCCAACAAGCGGCACAGCTCGGCGTCGGTGGAAAACGTGTCGCGGCTGGTCCGGAGCTCGGAGGGCTCAGACGAGGAGTATGGGAACAGCAACAGCCCCATGTGCCGGGAGACGTCGGCAGGCTACCAAAACGGACTAAACTACATTGCCTTAAACCTGATGGAAGGGAGCCTGGGGGGTTGCACAAGTCTGGGGGGCTGTGAGGGACTGCTGAGGTTCAAGGCAGCGTGTGGATGCAAGGGGGGCATGAACGGTTTCAACGCCAGCCCCTATGCCACCATGGGCTTCAAGGAGACTGCAACAGCAGTGAAAGACTGAAATCTGATGGGACCACCCCCCCTCCtataccccctctttctctctctctttctctctctttctttctctcctctctctctctctctctcctggctgtGAACGATGGATAACGCTGCAGCCTAGTGACGAGGTCGCCACGCCAACAGCTGGACCATGTGCTGCAGTAGACAAACTTTAACCTCCACCATCCCCTCCCCTAGGGGTCAACAAGGCCGCCGTCGTCACGACAATGTGGACACTTGATCCCCCAAGTCTCCTATCTTCACTCCCCCCTCTCGGCACCCAGACATTGAGGGGCCGTCGCTGCTGCTATCTAGACAAATAAAAAGAATGTTTCGTCAAAGATTATCTATGTACATTCAAAGTTACTTCTGCAaaatgatattattattattgttcttattattattattattccactGGTTATCGTTTGGCTTTGGCTGACAGGGCCAGTTAACCTCACCTTGAACCAAACCTCAAGATATGCGAAACACACGTTATACATACTTacacatgtttatttatttatatgtgtGCACTTagtggtgcatgtgtgtgtgtgtggatgtgtacaCTGAATTTGTACTGAAGAGAGGTGGCATTTTCAAATATATTCAACAACGTAGTGAGTTAGCAGTTGCTTAAAACCCCTACCTCAGAGCAAACCAGGTTAGTACTTATTTACACACCAGAAATATATATCgagatatatttatttattttcagagGTGAATGTTTTTATGAACACCAATCCAAAGCCTTACTACTCTCCTGTCCGCAGTTTCTGATGGACGTTTAGTTTGGACCTATAAACACGCAGAAAATCAAAGACTTAAACCCATTGCCATGGAGACGGAATGCTTGTCTGAGCAGCCGGAGAGGAAGAAATGTCTGTCTGACCTCTTTTCCTCTGCAATCAAAGATTATTGAGATTATTACAGTTCGTTCACATATAGTTACTATATATTAATATGCCATAGTAATATATTTATCATTGCATACAAAGCTTACGAGAAGAAGCTGTTCGGCATTATTCAACACGCAAGTAAAAGCCAGGAGAATGGGATCCAGGAGGAGTTTTCTAGAGTAGGACActcatcatcatcacacacacacatcatcatcatcacacacatCCGCATGTCCCAGTTTCACCTGGGCTGGTGGTCTGTTGTTAATGCCTACACCATCATTGAGACAAAGCCTTGATATACTTTAACAGATTACCTAGTTCACTCACAATGACCCACCTGTGACACGTTATTCTCACCTGATGCCTCAGCACGGCGCCCGTGGTTAGCTGTGATAGGCTATTTGGCACAGAGGTGTGCTGTTATTGGGCTGTGATTGGGCTGGGCAGACTCATGACTGGTTTTCAGAGAGGTTTTGACATGCCTGAAGCCATGGCTGCTGCTTTGGGCTGTGAGacagtaaggaaggaggaaacaCACCAGAGCTGACGCTGCACGGTCTTGCACTTACAAACTGCCTAGATTGTAAACACAAGACACTTGAATGTAGTCTATTCCATGTTCTCCTCTTGGGGAACGTAACCACCTTGACAACGAGAAGAAATACCACAACAATAACATCTACGACAACTGCTACAACATGCAGAATAAGACAAAAGAAACAGGCAAAAACGTAAGGACGAAGAGTGTAGCTTACTTTGTCAGTTCATTGGTACTCAACGTTCGCCTATATACTGTAAAAATGTACAAATACAGAGAATAGAATTGAGCGCAAGCTGAACCTTTTGTTTGAGAGAAATTTTAAGTTAAAGATGATACATTATGTTTGTACTGTTTATGTGTTTGGAGTGAATTCCCGGAAACAATGAAAGCACTAATTATTAAGTTATATACAAGCAGCAATGTTTGGCCTGGATTTTAAAATGATTATTACAGGATGGTCTTGTGAAATGATTGCCTCTACAAGGACATTTTCTAATGCTGTAATTCCGAGAAATACTTTGAGAACAAATGATTCATTGATACTTGACATACACGTTTATTCTTGCTACTTAGGTACATTTCACGAATGGCACATGCAATATTTACATTTTTAAGAAATTTGTTTATAGAGAGGTACCAACTGTATAATAATATGTTAATAATGTTTGTTAAACcttaaaatatattatttttttgctCTTTGTAATTTTTTTCTGCCAATTGATATAATGGAAAGTGTTCTGTTTGTTTTTGCTAATAGAGCGTATTGGTGATTTGaccagtgtttttttttgcatttgcaTAGCGTTCCTGTTGGGTTTTTATTTAGCGTCTAAACATTACGATGATATGACGACCTAGCTTAACTTGCTGTGTCTTCCATTGTAAATACTTCATATCTCTTATTGAGATGCTACTAAGAGATGATCATTTAAACCTAGTGTAGTTGCCATGGCTTTAGACTGTATTGATTCTTTATAGACACTTGCAATAAAGAATAACATTGTTTAAGAAAG
>TU330111
TGGGGGCCGGGGTCTTGCACCTGCCCCTCCCAGCAGTGCTCACTGGTTATCTGGCCCTTCAGAGGCAATGACTGAGCACCAtctgcgtgagagagagaggctgaaaacaaatccaattttgataaactcccatatctattgggtgaaataccacagtgagcaatcacagcagcaagatttgtgacccgtttccacaagaaaagggcaaccagtgaagaacaaacaccattACTGAAATCTGATGGGACCACCCCCCCTCCtataccccctctttctctctctctttctctctctttctttctctcctctctctctctctctctcctggctgtGAACGATGGATAACGCTGCAGCCTAGTGACGAGGTCGCCACGCCAACAGCTGGACCATGTGCTGCAGTAGACAAACTTTAACCTCCACCATCCCCTCCCCTAGGGGTCAACAAGGCCGCCGTCGTCACGACAATGTGGACACTTGATCCCCCAAGTCTCCTATCTTCACTCCCCCCTCTCGGCACCCAGACATTGAGGGGCCGTCGCTGCTGCTATCTAGACAAATAAAAAGAATGTTTCGTCAAAGATTATCTATGTACATTCAAAGTTACTTCTGCAaaatgatattattattattgttcttattattattattattccactGGTTATCGTTTGGCTTTGGCTGACAGGGCCAGTTAACCTCACCTTGAACCAAACCTCAAGATATGCGAAACACACGTTATACATACTTacacatgtttatttatttatatgtgtGCACTTagtggtgcatgtgtgtgtgtgtggatgtgtacaCTGAATTTGTACTGAAGAGAGGTGGCATTTTCAAATATATTCAACAACGTAGTGAGTTAGCAGTTGCTTAAAACCCCTACCTCAGAGCAAACCAGGTTAGTACTTATTTACACACCAGAAATATATATCgagatatatttatttattttcagagGTGAATGTTTTTATGAACACCAATCCAAAGCCTTACTACTCTCCTGTCCGCAGTTTCTGATGGACGTTTAGTTTGGACCTATAAACACGCAGAAAATCAAAGACTTAAACCCATTGCCATGGAGACGGAATGCTTGTCTGAGCAGCCGGAGAGGAAGAAATGTCTGTCTGACCTCTTTTCCTCTGCAATCAAAGATTATTGAGATTATTACAGTTCGTTCACATATAGTTACTATATATTAATATGCCATAGTAATATATTTATCATTGCATACAAAGCTTACGAGAAGAAGCTGTTCGGCATTATTCAACACGCAAGTAAAAGCCAGGAGAATGGGATCCAGGAGGAGTTTTCTAGAGTAGGACActcatcatcatcacacacacacatcatcatcatcacacacatCCGCATGTCCCAGTTTCACCTGGGCTGGTGGTCTGTTGTTAATGCCTACACCATCATTGAGACAAAGCCTTGATATACTTTAACAGATTACCTAGTTCACTCACAATGACCCACCTGTGACACGTTATTCTCACCTGATGCCTCAGCACGGCGCCCGTGGTTAGCTGTGATAGGCTATTTGGCACAGAGGTGTGCTGTTATTGGGCTGTGATTGGGCTGGGCAGACTCATGACTGGTTTTCAGAGAGGTTTTGACATGCCTGAAGCCATGGCTGCTGCTTTGGGCTGTGAGacagtaaggaaggaggaaacaCACCAGAGCTGACGCTGCACGGTCTTGCACTTACAAACTGCCTAGATTGTAAACACAAGACACTTGAATGTAGTCTATTCCATGTTCTCCTCTTGGGGAACGTAACCACCTTGACAACGAGAAGAAATACCACAACAATAACATCTACGACAACTGCTACAACATGCAGAATAAGACAAAAGAAACAGGCAAAAACGTAAGGACGAAGAGTGTAGCTTACTTTGTCAGTTCATTGGTACTCAACGTTCGCCTATATACTGTAAAAATGTACAAATACAGAGAATAGAATTGAGCGCAAGCTGAACCTTTTGTTTGAGAGAAATTTTAAGTTAAAGATGATACATTATGTTTGTACTGTTTATGTGTTTGGAGTGAATTCCCGGAAACAATGAAAGCACTAATTATTAAGTTATATACAAGCAGCAATGTTTGGCCTGGATTTTAAAATGATTATTACAGGATGGTCTTGTGAAATGATTGCCTCTACAAGGACATTTTCTAATGCTGTAATTCCGAGAAATACTTTGAGAACAAATGATTCATTGATACTTGACATACACGTTTATTCTTGCTACTTAGGTACATTTCACGAATGGCACATGCAATATTTACATTTTTAAGAAATTTGTTTATAGAGAGGTACCAACTGTATAATAATATGTTAATAATGTTTGTTAAACcttaaaatatattatttttttgctCTTTGTAATTTTTTTCTGCCAATTGATATAATGGAAAGTGTTCTGTTTGTTTTTGCTAATAGAGCGTATTGGTGATTTGaccagtgtttttttttgcatttgcaTAGCGTTCCTGTTGGGTTTTTATTTAGCGTCTAAACATTACGATGATATGACGACCTAGCTTAACTTGCTGTGTCTTCCATTGTAAATACTTCATATCTCTTATTGAGATGCTACTAAGAGATGATCATTTAAACCTAGTGTAGTTGCCATGGCTTTAGACTGTATTGATTCTTTATAGACACTTGCAATAAAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597817.2 False 6162 mRNA 0.50 2 69260503 69277276
TU330111 True 2685 lncRNA 0.41 2 69260523 69269184

Neighbor

gene id symbol gene type direction distance location
LOC110520471 NA coding downstream 673761 68584472 ~ 68586742 (-)
LOC110520470 LOC106586656 coding downstream 799924 68455461 ~ 68460579 (-)
LOC110520467 LOC106586653 coding downstream 967753 68278572 ~ 68292750 (-)
LOC110520466 cd200 coding downstream 1007262 68227272 ~ 68253241 (-)
si:ch211-214p13.7 NA coding downstream 1051829 68206330 ~ 68208674 (-)
LOC110520476 LOC106586666 coding upstream 103191 69380467 ~ 69469698 (-)
LOC110520477 LOC106586672 coding upstream 318561 69595837 ~ 69614655 (-)
LOC110520480 ube2al coding upstream 363990 69641214 ~ 69644739 (-)
ankrd10b LOC106586677 coding upstream 372261 69649537 ~ 69675010 (-)
otc otc coding upstream 421189 69698465 ~ 69709169 (-)
G291139 NA non-coding downstream 2219 69258051 ~ 69258284 (-)
G291137 NA non-coding downstream 4611 69255460 ~ 69255892 (-)
G291098 NA non-coding downstream 56535 69174337 ~ 69203968 (-)
G291093 NA non-coding downstream 100121 69160171 ~ 69160382 (-)
G291087 NA non-coding downstream 107083 69153212 ~ 69153420 (-)
G291148 NA non-coding upstream 8461 69285737 ~ 69286060 (-)
G291546 NA non-coding upstream 22602 69299878 ~ 69300091 (-)
G291549 NA non-coding upstream 29151 69306427 ~ 69306636 (-)
G291560 NA non-coding upstream 47071 69324347 ~ 69325120 (-)
G291572 NA non-coding upstream 67726 69345002 ~ 69351042 (-)
G291138 NA other downstream 3959 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 409649 68846611 ~ 68850854 (-)
G290602 NA other downstream 535589 68721808 ~ 68724914 (-)
G290598 NA other downstream 543118 68710367 ~ 68717385 (-)
G290567 NA other downstream 612883 68626332 ~ 68647620 (-)
G291901 LOC106586687 other upstream 703070 69980346 ~ 69996605 (-)
G291977 NA other upstream 830264 70107540 ~ 70107950 (-)
G292753 NA other upstream 1442760 70720036 ~ 70720591 (-)
G292919 NA other upstream 1750343 71027619 ~ 71040152 (-)
G293984 NA other upstream 2626038 71903314 ~ 71903908 (-)

Expression


Co-expression Network