LOC110520479 (LOC106586674)


Basic Information

Item Value
gene id LOC110520479
gene name LOC106586674
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69634580 ~ 69640723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597825.2
GCATTAAAACAATAGACTTAAAAACATATTCAAACGTCGTTGCCGAAAAAGtatcttcacaaaaaaacaaatcGACACATGTCGAGTTTCACAGGATGCGCATGCGCAAAACACCGGTTTATTTGTTCAACTCAAGTTTACCGTTCTTCACGCTCTAATCAATGCACCGTTAGAATATTCTCCAGTTGGATTGAATACATTGTATGAGCTTCAGTAGGCGGAAAACATATAACGTTTCTGCTTTGTGTGGACATTGACTGACGACAATGTTAAATCCGGCTAACGGCGACCCGGTCCACGTCGTTTCAAATTATGTGGAAGAATATTTGGATTTGGTCGAATCACTGCCTTTCGACCTACAGAGGAGTGTGTCGCTTATGAAGGAAATTGATGCGACATATCAAGATGGCCTGCAAGAGCTGGATGACGTTTATGAGCGCTACAGTCGGGAGTCCGACCCTCTCCAGCGGCATAGACTTCAGCTGGCCATCCAGAGAGCTCTTATCCGCAGCCAGGAGCTGGGAGATGAGAAGATCCAGATTGCTGGGCAGATGGTGGAGTTGGTGGAGAACTGTAGCAGACAGGTGGACTGGCATTCTGATCTCCTCCACGCCTCCAAGGAGAACCCTGATACCCATGTACCCACATCAACTGCCATGACGACGACCGCAGCCTCCATAGTGCCGTCAGCAGAAACAACAACTCCGGGCAAAGCTGGTCACCATGACAAGAGGCGTGACGAGGTGACACCGTGCTCAGTCGGCGGGGGGGACAAGTCTGGCGGGAAACGGTCACGGCGGCAGAAAAGCGGAGAGAATTGGGAGAGTTATGGAAGCATGGGTCATGTTGATGAGGTGGCGCCCAGAGAGAAGAGGGCCAAAACGTTGTCGTCCAAGAAGAAGAAGTCAAAGGGCAAGTCAGAGAGGGAGGTGTCACCCCTAGACCTGCCCATCGACCCAGACGAGCCCACCTACTGCCTGTGTGAACAGGTATCTTACGGCGAGATGATTGGCTGTGATAACGACGAGTGTCTCATCGAGTGGTTCCACTTCTCCTGTGTGGCGCTACATCACAAGCCCAAGGGGAAGTGGTTCTGCCCCAAATGCAGGGGCGAGAATGAGAAGACAATGGACAAGGCCCTAGAGAGGGCGAAGAAGGAAAGGGCCTACAACAGGTAGCTTCTCTACCTAGCCCAGCGGACATTGTCATGTTAGGTTAGTTTTTTCTACTCCCGATGCGGTTTGAAAATGAATTGGAAAGAGGGACTTATTTTAGTAAATGCTGTACTGGAAGATGGACATCCTGGTTCACGACAGATACAGCATAATGTAATAGATTATTTTATCAAATAGCCACACCAATGATTGTTGACGTTGCTGTATCATGCATGCAACCATAATGCTCTTCCgaacaaataaaaaaattcatCCAAGATCGTGCAATACA
>XM_021597826.2
CATTAGCGTGTTCAGACCATAATCAGTGTGAAGGCTGTAACGACGTTACTGCTACTAGCTAATACTAGCTAATGGTAGCTAGTTCGCTAACACAGTAGGCTCTAAGAGCCTGAAGCTTCCTCCTGTTAAACGTTAGATAGTGGAACTAGGTTTCATGGATACAGTAAGGAAAAAGCTTTGTGTGGACATTGACTGACGACAATGTTAAATCCGGCTAACGGCGACCCGGTCCACGTCGTTTCAAATTATGTGGAAGAATATTTGGATTTGGTCGAATCACTGCCTTTCGACCTACAGAGGAGTGTGTCGCTTATGAAGGAAATTGATGCGACATATCAAGATGGCCTGCAAGAGCTGGATGACGTTTATGAGCGCTACAGTCGGGAGTCCGACCCTCTCCAGCGGCATAGACTTCAGCTGGCCATCCAGAGAGCTCTTATCCGCAGCCAGGAGCTGGGAGATGAGAAGATCCAGATTGCTGGGCAGATGGTGGAGTTGGTGGAGAACTGTAGCAGACAGGTGGACTGGCATTCTGATCTCCTCCACGCCTCCAAGGAGAACCCTGATACCCATGTACCCACATCAACTGCCATGACGACGACCGCAGCCTCCATAGTGCCGTCAGCAGAAACAACAACTCCGGGCAAAGCTGGTCACCATGACAAGAGGCGTGACGAGGTGACACCGTGCTCAGTCGGCGGGGGGGACAAGTCTGGCGGGAAACGGTCACGGCGGCAGAAAAGCGGAGAGAATTGGGAGAGTTATGGAAGCATGGGTCATGTTGATGAGGTGGCGCCCAGAGAGAAGAGGGCCAAAACGTTGTCGTCCAAGAAGAAGAAGTCAAAGGGCAAGTCAGAGAGGGAGGTGTCACCCCTAGACCTGCCCATCGACCCAGACGAGCCCACCTACTGCCTGTGTGAACAGGTATCTTACGGCGAGATGATTGGCTGTGATAACGACGAGTGTCTCATCGAGTGGTTCCACTTCTCCTGTGTGGCGCTACATCACAAGCCCAAGGGGAAGTGGTTCTGCCCCAAATGCAGGGGCGAGAATGAGAAGACAATGGACAAGGCCCTAGAGAGGGCGAAGAAGGAAAGGGCCTACAACAGGTAGCTTCTCTACCTAGCCCAGCGGACATTGTCATGTTAGGTTAGTTTTTTCTACTCCCGATGCGGTTTGAAAATGAATTGGAAAGAGGGACTTATTTTAGTAAATGCTGTACTGGAAGATGGACATCCTGGTTCACGACAGATACAGCATAATGTAATAGATTATTTTATCAAATAGCCACACCAATGATTGTTGACGTTGCTGTATCATGCATGCAACCATAATGCTCTTCCgaacaaataaaaaaattcatCCAAGATCGTGCAATACA

Function

NR:

description
inhibitor of growth protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597825.2 False 1446 mRNA 0.48 4 69634580 69640723
XM_021597826.2 True 1381 mRNA 0.50 4 69634850 69640723

Neighbor

gene id symbol gene type direction distance location
LOC110520475 LOC106586671 coding upstream 38782 69469776 ~ 69595798 (+)
LOC110504559 LOC106586663 coding upstream 468188 68942535 ~ 69172271 (+)
LOC110504548 NA coding upstream 775843 68854772 ~ 68858737 (+)
LOC110520472 LOC106586659 coding upstream 784265 68846508 ~ 68850315 (+)
LOC118964318 NA coding upstream 1297265 68334244 ~ 68337315 (+)
LOC118964360 NA coding downstream 35787 69676510 ~ 69676663 (+)
LOC110504569 rpgr coding downstream 71625 69712348 ~ 69731657 (+)
LOC110504579 LOC106582139 coding downstream 91036 69731759 ~ 69769646 (+)
LOC110520485 dynlt3 coding downstream 221171 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 coding downstream 275087 69915810 ~ 69923807 (+)
G291274 NA non-coding upstream 97322 69534421 ~ 69537258 (+)
G291261 NA non-coding upstream 127102 69499548 ~ 69507478 (+)
G291182 NA non-coding upstream 316395 69317897 ~ 69318185 (+)
G291178 NA non-coding upstream 322762 69311606 ~ 69311818 (+)
G291155 NA non-coding upstream 335644 69298647 ~ 69298936 (+)
G291326 NA non-coding downstream 53292 69694015 ~ 69694249 (+)
G291331 NA non-coding downstream 59025 69699748 ~ 69701720 (+)
G291345 NA non-coding downstream 79285 69720008 ~ 69720786 (+)
G291353 NA non-coding downstream 99815 69740538 ~ 69740934 (+)
G291354 NA non-coding downstream 100257 69740980 ~ 69741802 (+)
LOC110520478 LOC106586673 other upstream 4211 69625755 ~ 69635303 (+)
G289883 NA other upstream 1409274 68223725 ~ 68225306 (+)
G289517 NA other upstream 1872157 67761737 ~ 67762423 (+)
G289486 NA other upstream 1952458 67678862 ~ 67682122 (+)
G289455 NA other upstream 2002370 67625353 ~ 67632210 (+)
G291327 NA other downstream 54672 69695395 ~ 69695836 (+)
G291461 NA other downstream 308944 69949667 ~ 69952168 (+)
LOC110520493 LOC106586690 other downstream 416817 70057383 ~ 70070470 (+)

Expression


Co-expression Network