LOC110504590 (lancl3)


Basic Information

Item Value
gene id LOC110504590
gene name lancl3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69907305 ~ 69911161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583357.2
ATGAGTATTAGCACCACGGACAGCAACTGGCCGCTTACCAAATTTCGGAACCTGTTGAAGATATGCTCACCCATCAATTTCTTGGAGTGCGGCTCTGACGAGCTGTTCGTGGGGCGGGCGGGGTACCTGTGCGCTGACCTGGTGGTGAAACAGAAACTGGGGATTGAGATTCTTAGCAAGGATCAGATCCAGGCCATTTGCCAGGTTATTATAGAGTCTGGTAAACAGTATGCCACGAGGAAGAGAAAACCCTATCCTCTCATGTACTCCTACTATGGGACTGAGTATTTGgGTGCAGCCCATGGCCTGTCGTCGGTGCTGCAGATGTTGCTGTGTTACCAGGAGGTGCTGAATGGAGGGGACAGGGATCTGGTCGGGCAGATTGTGGACTTCCTCATGAACTAGGAGCAGAACGGTAACTGGCCGGCCGAGCTGGGAgccatgacagagagggagaatgagctGGTGCACTGGTGCCATGGTGCGCCAGGTGTAGCCTACCTCTTTGACAAAGCCTACCTGATCAATAGGAAGCCCCAGTACCTGGACACATGCATCCGCAGTGGGGAGCAGGTGTGGCTGAAGGGCCTGCTGAAGAAAGGTCCAGGGATCTGCCATGGAATGGCAGGCAGCGCCTATGTCTTCATGTTACTGTACTGCCTCACAGGGAACTCCAAATtcctcttttctccccacAGGTTTGCAGAGTTCCTGTTTACGGAAGAGTTCAAGGTGGGCTCCTGCTCAGTCACCAGTGTTTATAGTCTGTTTGAGGGCCTGTCTGGAGCCGTTTGCTTCTTGGTTGACCTCCTTCAGCCCGACCAATCAGAGTTCCCACtcttcagtgtgtttgtgtga

Function

symbol description
lancl3 Predicted to be involved in carbohydrate metabolic process. Predicted to be active in plasma membrane.

NR:

description
LOW QUALITY PROTEIN: lanC-like protein 3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583357.2 True 858 mRNA 0.53 7 69907305 69911161

Neighbor

gene id symbol gene type direction distance location
xk xk coding downstream 3450 69871658 ~ 69903855 (-)
LOC110520487 NA coding downstream 12174 69892951 ~ 69895131 (-)
sytl5 sytl5 coding downstream 46304 69775632 ~ 69861001 (-)
otc otc coding downstream 198136 69698465 ~ 69709169 (-)
ankrd10b LOC106586677 coding downstream 232295 69649537 ~ 69675010 (-)
asb11 LOC106586685 coding upstream 16500 69927661 ~ 69933360 (-)
piga LOC106586684 coding upstream 22536 69933697 ~ 69938856 (-)
LOC110520490 LOC106586686 coding upstream 38504 69949665 ~ 69971173 (-)
LOC110520492 LOC106586689 coding upstream 123879 70035040 ~ 70048393 (-)
LOC110520496 LOC106586692 coding upstream 214137 70125298 ~ 70135532 (-)
G291812 NA non-coding downstream 43735 69862058 ~ 69863570 (-)
G291829 NA non-coding downstream 46994 69860109 ~ 69860311 (-)
G291827 NA non-coding downstream 52516 69854480 ~ 69854789 (-)
G291896 NA non-coding upstream 60500 69971661 ~ 69971925 (-)
G291884 LOC106586687 non-coding upstream 119603 70030764 ~ 70034763 (-)
G292214 NA non-coding upstream 209247 70120408 ~ 70120729 (-)
G292211 NA non-coding upstream 211698 70122859 ~ 70164009 (-)
G291138 NA other downstream 650761 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 1056451 68846611 ~ 68850854 (-)
G290602 NA other downstream 1182391 68721808 ~ 68724914 (-)
G290598 NA other downstream 1189920 68710367 ~ 68717385 (-)
G290567 NA other downstream 1259685 68626332 ~ 68647620 (-)
G291901 LOC106586687 other upstream 69185 69980346 ~ 69996605 (-)
G291977 NA other upstream 196379 70107540 ~ 70107950 (-)
G292753 NA other upstream 808875 70720036 ~ 70720591 (-)
G292919 NA other upstream 1116458 71027619 ~ 71040152 (-)
G293984 NA other upstream 1992153 71903314 ~ 71903908 (-)

Expression


Co-expression Network