asb11 (LOC106586685)


Basic Information

Item Value
gene id asb11
gene name LOC106586685
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69927661 ~ 69933360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597848.2
CCCTCATTCAGACTGTTTGTGAAGAGTGAACCACAGTTTGGTAAAAACAAGTTTTTACTTTCAAAATACCCAACTATTCACATTCCAATGTCGATGTACTACAGGCACCATGTTTTGACTGGCTGTTTTGAAGTGATGTCCCTGAAGGAAATAGTGAACCGGACTTGAATGATGTAACAACACAGATATGCAGATAGCTTTACAACTCCCCTCTTAAAATGGGCTTTTAGAAAGCCCTAAACAGATTTCTTAAATTCCATCGCACCTTATCCAATTTTGTTTTTCTTACGCCATAAGGTTGACCTTTGCACATGTTGAAATACCACACCTTATCACCTAGATATCAGAATAGACACAGATGTTccatttgtgtgtctgtgtctatccgTCCTATGCTTACCTCTATTCTCATGCAACGGTTCCCCAATTCCACGGAAAGGGGGGTTGTAGGGGTGGTACTCCTTTCCTCAGGGTTGGGGGAGGAGGTAGCTTGGGGCCTGATAAGAGGTCTGGGAAAGCCAGCAGTGGACAGACAGGTTTGTGGATCCCACCCATAGCTGCTTCATTCACTGTGGAGGAGGCTGCTGTTGTTTGACCATGGCTGGTGTGCAGACGGAGATTGCCCTGTGCAGTCGGCCTTGGAGGGGACCCTTCCATATCTATGGTGGACTGGCATGCAACTCACTCATGGCTGACTTGTGGTCAGACAGGACTCCTCTTCACGATGCCGCCTACCAGGGTAGACTCCTGATCCTGAAGACTCTGGTCTCACAGGGGTTTCCTGTGGACATGCTGACAATGGACAGGGTCTCTCCCCTCCACGAGGCCTGCCTCGGAGGACATTACGCCTGCACCACGTTCCTACTTGAGAACGGGGCCAATgtGGAGATGGTATCGACTGATGGAGCCACACCCCTCTTCAATGCCTGCAGCAGTGGGAGTGTCGCCTGTGTCAGACTGATTCTACAGTACAGCCCCAACACCCATGCTGTCCATCACCTGGCATCACCCATCCACCAGGCTGCAAAGAGAGGTCACAGGGAGTGTCTAGAGGTGTTGCTGTCCCATGGATTCCACATAGACCTGGAGCTGCCTGGTGTGGGAACCCCTTTGTACACAGCCTGTCTGGCCCAGGCCACCGACTGTGTGGAGAGACTGCTGCAATCAGGTGTTGATGTCCAGGGTGGGTGTGGTCATGACACACCATTACATGCTGCAGTGCTAGGGGGAGAAGTCAGGGTGGTGGAGCTTCTGATGGACTACGGGGCTGATGGGAGTTGTAGGAATTCAGACGGGAAGACTCCTCTGGAGCTGGCAGCTTGCGACAGTACAGTCAGAACTACAATACAGAAAAGAGgTCCCTGCACTCTTTCTCAGCTGTGTCGGTTCTGCATTCGGAGGAGTTTGGGACAGACTCGTCTGGACAGAACATCAGCCCTCTTCCTCCCTTACAGACTCCAGGCTTTCCTGCTTTACCAGTAACACTGAAACGGCaacttttttacaaatgtttggtAATTTGTATTTATTGCTATTTTAATCAACTTCTACTTGTTCAGGGGTTTTAGAAGTGAGTTGGTGACTGAACAAATGAATGGTTTTGTTTTTCTTGGTTTAATAGAAACTGGGTTGACTGATTTGTAGCGTTTCTCAGGATGCTATATTTTCTAATAAATGGTCATATTCAACATATCCAAAATA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0045747 positive regulation of Notch signaling pathway biological_process
GO:0007221 positive regulation of transcription of Notch receptor target biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597848.2 True 1701 mRNA 0.49 6 69927661 69933360

Neighbor

gene id symbol gene type direction distance location
LOC110504590 lancl3 coding downstream 16500 69907305 ~ 69911161 (-)
xk xk coding downstream 23806 69871658 ~ 69903855 (-)
LOC110520487 NA coding downstream 32530 69892951 ~ 69895131 (-)
sytl5 sytl5 coding downstream 66660 69775632 ~ 69861001 (-)
otc otc coding downstream 218492 69698465 ~ 69709169 (-)
piga LOC106586684 coding upstream 337 69933697 ~ 69938856 (-)
LOC110520490 LOC106586686 coding upstream 16305 69949665 ~ 69971173 (-)
LOC110520492 LOC106586689 coding upstream 101680 70035040 ~ 70048393 (-)
LOC110520496 LOC106586692 coding upstream 191938 70125298 ~ 70135532 (-)
LOC118964359 NA coding upstream 286970 70220330 ~ 70220464 (-)
G291812 NA non-coding downstream 64091 69862058 ~ 69863570 (-)
G291829 NA non-coding downstream 67350 69860109 ~ 69860311 (-)
G291827 NA non-coding downstream 72872 69854480 ~ 69854789 (-)
G291896 NA non-coding upstream 38301 69971661 ~ 69971925 (-)
G291884 LOC106586687 non-coding upstream 97404 70030764 ~ 70034763 (-)
G292214 NA non-coding upstream 187048 70120408 ~ 70120729 (-)
G292211 NA non-coding upstream 189499 70122859 ~ 70164009 (-)
G291138 NA other downstream 671117 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 1076807 68846611 ~ 68850854 (-)
G290602 NA other downstream 1202747 68721808 ~ 68724914 (-)
G290598 NA other downstream 1210276 68710367 ~ 68717385 (-)
G290567 NA other downstream 1280041 68626332 ~ 68647620 (-)
G291901 LOC106586687 other upstream 46986 69980346 ~ 69996605 (-)
G291977 NA other upstream 174180 70107540 ~ 70107950 (-)
G292753 NA other upstream 786676 70720036 ~ 70720591 (-)
G292919 NA other upstream 1094259 71027619 ~ 71040152 (-)
G293984 NA other upstream 1969954 71903314 ~ 71903908 (-)

Expression


Co-expression Network