LOC110520492 (LOC106586689)


Basic Information

Item Value
gene id LOC110520492
gene name LOC106586689
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70035040 ~ 70048393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597856.2
AAAAAAGCAAGCTAGTCCCCGCCCCCTGTCTTGTTGTCCAAAAACTTGCATGAAATCGATTTGAGTGGAAAGGCTAGCTTGCTATTCTACATTGACTCATATATCAAGTCCACAATCTTGGGAGTGTACATTTTAAGAGAATAGGTTGAATCTTGGGGTACAGCAATGTCTAAAAGTGAGACAGAGGAGATGATAGAGATTGAGATCGACGGACAGGAGAAACAGGAGTGCCTGGAGGAGGGGGTTGAGGAGCAGACCATTACATCAGCCGATCTGATCCAACAGGACATCGACATCAATGAGCCAATCGGTAACCTGAAGAAGCTCCTGGAGCCCCGTATCCAGATGTCATTGGATGGATATGAAATCTGTTTACAGGACATCCAGcTGCATCCAGACCACAGCCTCTTTGATCAAGGAGTGAAGACAGACGGCACAGTGCAACTCAGTCTACAGATCATCACAAAGCCAGGCGAGGAGAAGCTGAACATTTTGGAGATCGTGAAGCCGGTGGAGACGGTGGAGGTGGTGATAGACCCGGATGCGGCAGGGGAGGAGGGCACCCTGATGGAGGAGGGCCAGCTGATTGCTGTGGAGCACTCCTCCCTGTCAGATGACACCTCGGAGCAGGTGACACGCTGGGCCGCCGCCCTGGAGGGCTACCGCAAGGAACAGGTCCGTCTGGGGATACCCTACGacCCAGAACAGTGGACGGCGGACCAGGTGATCCACTGGGCCGTGTGGGTGATGAAGGAGTTCAGCATTGACGAGATGGAGGTGGGAGGGATTCACATCCCGGGTCACGACCTCTGCTCCTTCACCCAGGAAGAGTTCCTGCAGAGGGTCCCCAGTGGAGAGATCCTTTGGAGCCACTTAGAGCTGCTCCGCAAGTATGTGTTGGCCAGTCAGGACCAGTCTGGCCAGGAGGCCACAGTCACCATTGACCAACAAGTCCAGATCATCCCAGCTGCCGTGCAGACCACACCCACTACTATCAAGGTACTGAAGCAGAACCGCGGCCCCAGAACACCCCGCAtctcaggaggagaggagcgcaGCTCACCTGGCAACCGCACAGGTAACAACGGTCAGATCCAGCTGTGGCAGTTCCTGTTGGAGCTGTTGACGGATAAGGATGCTAGAGACTGTATCTCctgggtgggagaggagggagagttcaAACTCAACCAGCCTGAACTGGTGGCCCAAAAATGGGGTCAACGCAAGAACAAGCCCACCATGAACTATGAGAAACTCAGCCGAGCGCTCAGGTATTACTACGACGGGGACATGATCAGCAAGGTGCAGGGCAAGCGCTTCGTCTACAAGTTTGTGTGCGACCTGAGGACTTTGATTGGCTACAGCGCTGCTGAGCTCAACAACCTGGTGACGGAGTGTGAGCAGAAGAAGCTGGCCCGCATTCAGCTGCATGGGATTGGCCAGCCCATCACCACGGTGACACTGGCCACCTCAGCACAGGACAGCTGAGGGGGAGGGGCATGGGGATCCATGACTGCCCCAGGTAGAAGTTGCCCACTGTGACCAGCCCTAAGTGTTACATTAATAGGTGGAAATGATGAACAGACTTTAGATCCATGTCTATGGGCAACTTCGTCCTTCTCCTTTGATTGGGGAGGTTGTTTTCTTATTTTAACCAGGGAAGAGATGCTTGTTGGAgggagtgtatatgtgtgtgtgtgtatatgagtgtctgAGAGGTGGAGTGTGTTTGCGTATGCTGGAAAATCAAATGAGCTTTGCATTTTTTGTTCCTTTATCTGTAGCTTAGTATAGTTTCCATTGTAAATACCGGTACTCCATGTTTTTGATAGCCACAAGGGCAGTGTATTTTCATATTTTCCATTTATAAAAGGAtcagttttgtattttatttgaggCTTTTTTTCCTCCTAATGAGTTGGACCTTGATCGTCCACCAGGGGAAATAAAGTGGCAGATGTTTTCCTAA
>XM_021597858.2
AAAAAAGCAAGCTAGTCCCCGCCCCCTGTCTTGTTGTCCAAAAACTTGCATGAAATCGATTTGAGTGGAAAGGCTAGCTTGCTATTCTACATTGACTCATATATCAAGTCCACAATCTTGGGAGTGTACATTTTAAGAGAATAGGTTGAATCTTGGGGTACAGCAATGTCTAAAAGTGAGACAGAGGAGATGATAGAGATTGAGATCGACGGACAGGAGAAACAGGAGTGCCTGGAGGAGGGGGTTGAGGAGCAGACCATTACATCAGCCGATCTGATCCAACAGGACATCGACATCAATGAGCCAATCGGTAACCTGAAGAAGCTCCTGGAGCCCCGTATCCAGATGTCATTGGATGGATATGAAATCTGTTTACAGGACATCCAGcTGCATCCAGACCACAGCCTCTTTGATCAAGGAGTGAAGACAGACGGCACAGTGCAACTCAGTCTACAGATCATCACAAAGCCAGGCGAGGAGAAGCTGAACATTTTGGAGATCGTGAAGCCGGTGGAGACGGTGGAGGTGGTGATAGACCCGGATGCGGCAGGGGAGGAGGGCACCCTGATGGAGGAGGGCCAGCTGATTGCTGTGGAGCACTCCTCCCTGTCAGATGACACCTCGGAGCAGGTGACACGCTGGGCCGCCGCCCTGGAGGGCTACCGCAAGGAACAGGTCCGTCTGGGGATACCCTACGacCCAGAACAGTGGACGGCGGACCAGGTGATCCACTGGGCCGTGTGGGTGATGAAGGAGTTCAGCATTGACGAGATGGAGGTGGGAGGGATTCACATCCCGGGTCACGACCTCTGCTCCTTCACCCAGGAAGAGTTCCTGCAGAGGGTCCCCAGTGGAGAGATCCTTTGGAGCCACTTAGAGCTGCTCCGCAAGTATGTGTTGGCCAGTCAGGACCAGTCTGGCCAGGAGGCCACAGTCACCATTGACCAACTCCAGATCATCCCAGCTGCCGTGCAGACCACACCCACTACTATCAAGGTACTGAAGCAGAACCGCGGCCCCAGAACACCCCGCAtctcaggaggagaggagcgcaGCTCACCTGGCAACCGCACAGGTAACAACGGTCAGATCCAGCTGTGGCAGTTCCTGTTGGAGCTGTTGACGGATAAGGATGCTAGAGACTGTATCTCctgggtgggagaggagggagagttcaAACTCAACCAGCCTGAACTGGTGGCCCAAAAATGGGGTCAACGCAAGAACAAGCCCACCATGAACTATGAGAAACTCAGCCGAGCGCTCAGGTATTACTACGACGGGGACATGATCAGCAAGGTGCAGGGCAAGCGCTTCGTCTACAAGTTTGTGTGCGACCTGAGGACTTTGATTGGCTACAGCGCTGCTGAGCTCAACAACCTGGTGACGGAGTGTGAGCAGAAGAAGCTGGCCCGCATTCAGCTGCATGGGATTGGCCAGCCCATCACCACGGTGACACTGGCCACCTCAGCACAGGACAGCTGAGGGGGAGGGGCATGGGGATCCATGACTGCCCCAGGTAGAAGTTGCCCACTGTGACCAGCCCTAAGTGTTACATTAATAGGTGGAAATGATGAACAGACTTTAGATCCATGTCTATGGGCAACTTCGTCCTTCTCCTTTGATTGGGGAGGTTGTTTTCTTATTTTAACCAGGGAAGAGATGCTTGTTGGAgggagtgtatatgtgtgtgtgtgtatatgagtgtctgAGAGGTGGAGTGTGTTTGCGTATGCTGGAAAATCAAATGAGCTTTGCATTTTTTGTTCCTTTATCTGTAGCTTAGTATAGTTTCCATTGTAAATACCGGTACTCCATGTTTTTGATAGCCACAAGGGCAGTGTATTTTCATATTTTCCATTTATAAAAGGAtcagttttgtattttatttgaggCTTTTTTTCCTCCTAATGAGTTGGACCTTGATCGTCCACCAGGGGAAATAAAGTGGCAGATGTTTTCCTAA
>XM_021597857.2
GTATATGTCTAAAAAAGCAAGCTAGTCCCCGCCCCCTGTCTTGTTGTCCAAAAACTTGCATGAAATCGATTTGAGTGGAAAGGCTAGCTTGCTATTCTACATTGACTCATATATCAAGTCCACAATCTTGGGAGTGTACATTTTAAGAGGTTGAATCTTGGGGTACAGCAATGTCTAAAAGTGAGACAGAGGAGATGATAGAGATTGAGATCGACGGACAGGAGAAACAGGAGTGCCTGGAGGAGGGGGTTGAGGAGCAGACCATTACATCAGCCGATCTGATCCAACAGGACATCGACATCAATGAGCCAATCGGTAACCTGAAGAAGCTCCTGGAGCCCCGTATCCAGATGTCATTGGATGGATATGAAATCTGTTTACAGGACATCCAGcTGCATCCAGACCACAGCCTCTTTGATCAAGGAGTGAAGACAGACGGCACAGTGCAACTCAGTCTACAGATCATCACAAAGCCAGGCGAGGAGAAGCTGAACATTTTGGAGATCGTGAAGCCGGTGGAGACGGTGGAGGTGGTGATAGACCCGGATGCGGCAGGGGAGGAGGGCACCCTGATGGAGGAGGGCCAGCTGATTGCTGTGGAGCACTCCTCCCTGTCAGATGACACCTCGGAGCAGGTGACACGCTGGGCCGCCGCCCTGGAGGGCTACCGCAAGGAACAGGTCCGTCTGGGGATACCCTACGacCCAGAACAGTGGACGGCGGACCAGGTGATCCACTGGGCCGTGTGGGTGATGAAGGAGTTCAGCATTGACGAGATGGAGGTGGGAGGGATTCACATCCCGGGTCACGACCTCTGCTCCTTCACCCAGGAAGAGTTCCTGCAGAGGGTCCCCAGTGGAGAGATCCTTTGGAGCCACTTAGAGCTGCTCCGCAAGTATGTGTTGGCCAGTCAGGACCAGTCTGGCCAGGAGGCCACAGTCACCATTGACCAACAAGTCCAGATCATCCCAGCTGCCGTGCAGACCACACCCACTACTATCAAGGTACTGAAGCAGAACCGCGGCCCCAGAACACCCCGCAtctcaggaggagaggagcgcaGCTCACCTGGCAACCGCACAGGTAACAACGGTCAGATCCAGCTGTGGCAGTTCCTGTTGGAGCTGTTGACGGATAAGGATGCTAGAGACTGTATCTCctgggtgggagaggagggagagttcaAACTCAACCAGCCTGAACTGGTGGCCCAAAAATGGGGTCAACGCAAGAACAAGCCCACCATGAACTATGAGAAACTCAGCCGAGCGCTCAGGTATTACTACGACGGGGACATGATCAGCAAGGTGCAGGGCAAGCGCTTCGTCTACAAGTTTGTGTGCGACCTGAGGACTTTGATTGGCTACAGCGCTGCTGAGCTCAACAACCTGGTGACGGAGTGTGAGCAGAAGAAGCTGGCCCGCATTCAGCTGCATGGGATTGGCCAGCCCATCACCACGGTGACACTGGCCACCTCAGCACAGGACAGCTGAGGGGGAGGGGCATGGGGATCCATGACTGCCCCAGGTAGAAGTTGCCCACTGTGACCAGCCCTAAGTGTTACATTAATAGGTGGAAATGATGAACAGACTTTAGATCCATGTCTATGGGCAACTTCGTCCTTCTCCTTTGATTGGGGAGGTTGTTTTCTTATTTTAACCAGGGAAGAGATGCTTGTTGGAgggagtgtatatgtgtgtgtgtgtatatgagtgtctgAGAGGTGGAGTGTGTTTGCGTATGCTGGAAAATCAAATGAGCTTTGCATTTTTTGTTCCTTTATCTGTAGCTTAGTATAGTTTCCATTGTAAATACCGGTACTCCATGTTTTTGATAGCCACAAGGGCAGTGTATTTTCATATTTTCCATTTATAAAAGGAtcagttttgtattttatttgaggCTTTTTTTCCTCCTAATGAGTTGGACCTTGATCGTCCACCAGGGGAAATAAAGTGGCAGATGTTTTCCTAA

Function

NR:

description
GA-binding protein alpha chain isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09441 GABPA; GA-binding protein transcription factor, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597856.2 False 1969 mRNA 0.51 10 70035040 70048383
XM_021597858.2 False 1966 mRNA 0.51 10 70035040 70048383
XM_021597857.2 True 1974 mRNA 0.51 10 70035040 70048393

Neighbor

gene id symbol gene type direction distance location
LOC110520490 LOC106586686 coding downstream 63867 69949665 ~ 69971173 (-)
piga LOC106586684 coding downstream 96184 69933697 ~ 69938856 (-)
asb11 LOC106586685 coding downstream 101680 69927661 ~ 69933360 (-)
LOC110504590 lancl3 coding downstream 123879 69907305 ~ 69911161 (-)
xk xk coding downstream 131185 69871658 ~ 69903855 (-)
LOC110520496 LOC106586692 coding upstream 76905 70125298 ~ 70135532 (-)
LOC118964359 NA coding upstream 171937 70220330 ~ 70220464 (-)
LOC110520510 tfg coding upstream 722763 70771156 ~ 70806540 (-)
jagn1a LOC106586704 coding upstream 758956 70807349 ~ 70810049 (-)
LOC110520512 col8a1 coding upstream 762211 70810604 ~ 70837491 (-)
G291884 LOC106586687 non-coding downstream 277 70030764 ~ 70034763 (-)
G291896 NA non-coding downstream 63115 69971661 ~ 69971925 (-)
LOC110520487 NA non-coding downstream 139997 69892951 ~ 69895131 (-)
G292214 NA non-coding upstream 72015 70120408 ~ 70120729 (-)
G292211 NA non-coding upstream 74466 70122859 ~ 70164009 (-)
G292215 NA non-coding upstream 80188 70128581 ~ 70129124 (-)
G292252 NA non-coding upstream 161174 70209567 ~ 70210180 (-)
G292256 NA non-coding upstream 167006 70215399 ~ 70215747 (-)
G291901 LOC106586687 other downstream 38435 69980346 ~ 69996605 (-)
G291138 NA other downstream 778496 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 1184186 68846611 ~ 68850854 (-)
G290602 NA other downstream 1310126 68721808 ~ 68724914 (-)
G290598 NA other downstream 1317655 68710367 ~ 68717385 (-)
G291977 NA other upstream 59147 70107540 ~ 70107950 (-)
G292753 NA other upstream 671643 70720036 ~ 70720591 (-)
G292919 NA other upstream 979226 71027619 ~ 71040152 (-)
G293984 NA other upstream 1854921 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 2124656 72121974 ~ 72206818 (-)

Expression


Co-expression Network