LOC110520493 (LOC106586690)


Basic Information

Item Value
gene id LOC110520493
gene name LOC106586690
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70057383 ~ 70070470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472992.2
gccatcattgtaaataataatttgttcttaatttgttcttaactgacttgcctagttaaataaaggttaaatgaaaaaaaaaaaaaacatttaaaaaagttaaAATCAGTGCTCAGTTCCTGGAAGGGTATCATTTCTGACGTCAAAAGTGTAGCCGATAGGATCGAAAATGGCGGAGTACCTGGCGTCCATTTTCGGTACAGAGAAAGATAAggTGAACTGTTCTTTCTACTTTAAAATTGGTGCCTGCCGACATGGTGACCGGTGCTCCAGATTACATAATAAACCAACTTTCAGCCAGACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACACTGCCCAGTCTGCCGATGGTTTGCGCTGTGCCATCAGTGATGTGGAGATGCAGGAGCACTACGATGAGTTCTTTGAGGAGGTCTtcacagagatggaggagaagtacggagaggtggaggagatgaATGTGTGCGACAACCTGGGAGACCATCTGGTTGGAAACGTATACCTGAAGTTTCATCGTGAGGAAGACGCGGAGAAGGCCGTGATGGATCTGAATAACCGTTGGTTCAACGGTCAACCAATCCACGCCGAGCTCTCTCCCGTTACAGACTTCAGAGAAGCCTGCTGCCGCCGGTACGAGATGGGGTCAGTACTCCACCgcaggaccacacacacaccattttcaGCTCAAGATGGCGTTAGTCGTGATTACAAATGCCTTGTAATTCATTGAGGGAGTGCACTCGAGGAGGCTTCTGTAACTTCATGCACCTGAAACCCATCTCCAGGCAGCTGAGGGAGCTGTACGGTCGCCGCAGGAAGAAGGGaggGGGCCATCGTTCTCGCTCCCGTTCCAGGGAACGCCGTTCTCGCTCGAGGGATAGAGGCAGGGGAGGCGGACGTGACCGCGAGAGAAGGCGTTCCAGAGAACGCTCTGGCAGGTTCTAAACCAAGCCACCACTTCACGTGCATCCCTTCCATCTCCATTATCATTCTGCATCATCCTCAAATCCATATCTTTCCCTCCATTGCTGCCTTTTCAA
>XM_021597860.2
atttgttcttaatttgttcttaactgacttgcctagttaaataaaggttaaatgaaaaaaaaaaaaaacatttaaaaaagttaaAATCAGTGCTCAGTTCCTGGAAGGGTATCATTTCTGACGTCAAAAGTGTAGCCGATAGGATCGAAAATGGCGGAGTACCTGGCGTCCATTTTCGGTACAGAGAAAGATAAggTGAACTGTTCTTTCTACTTTAAAATTGGTGCCTGCCGACATGGTGACCGGTGCTCCAGATTACATAATAAACCAACTTTCAGCCAGACCATCTTGATTCAAAACATCTACCGTAATCCCCAAAACAGTGCGCAGACGGCCGACGGCTCCCACTGTGCCATCAGTGATGTGGAGATGCAGGAGCACTACGATGAGTTCTTTGAGGAGGTCTtcacagagatggaggagaagtacggagaggtggaggagatgaATGTGTGCGACAACCTGGGAGACCATCTGGTTGGAAACGTATACCTGAAGTTTCATCGTGAGGAAGACGCGGAGAAGGCCGTGATGGATCTGAATAACCGTTGGTTCAACGGTCAACCAATCCACGCCGAGCTCTCTCCCGTTACAGACTTCAGAGAAGCCTGCTGCCGCCGGTACGAGATGGGGGAGTGCACTCGAGGAGGCTTCTGTAACTTCATGCACCTGAAACCCATCTCCAGGCAGCTGAGGGAGCTGTACGGTCGCCGCAGGAAGAAGGGaggGGGCCATCGTTCTCGCTCCCGTTCCAGGGAACGCCGTTCTCGCTCGAGGGATAGAGGCAGGGGAGGCGGACGTGACCGCGAGAGAAGGCGTTCCAGAGAACGCTCTGGCAGGTTCTAAACCAAGCCACCACTTCACGTGCATCCCTTCCATCTCCATTATCATTCTGCATCATCCTCAAATCCATATCTTTCCCTCCATTGCTGCCTTTTCAATTCCCTGTTGGCCCTTTCATATTGTCCCAATGACTAAAATTAATTGGAAAATGTTGGACTTgttattttccttttttttatCATTTTTATTCAAGAAATGTAAAGCTTGCCttctcaataaaaaaaaaaaagtaaacct
>XM_021597859.2
ttaatttgttcttaactgacttgcctagttaaataaaggttaaatgaaaaaaaaaaaaaacatttaaaaaagttaaAATCAGTGCTCAGTTCCTGGAAGGGTATCATTTCTGACGTCAAAAGTGTAGCCGATAGGATCGAAAATGGCGGAGTACCTGGCGTCCATTTTCGGTACAGAGAAAGATAAggTGAACTGTTCTTTCTACTTTAAAATTGGTGCCTGCCGACATGGTGACCGGTGCTCCAGATTACATAATAAACCAACTTTCAGCCAGACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACACTGCCCAGTCTGCCGATGGTTTGCGCTGTGCCATCAGTGATGTGGAGATGCAGGAGCACTACGATGAGTTCTTTGAGGAGGTCTtcacagagatggaggagaagtacggagaggtggaggagatgaATGTGTGCGACAACCTGGGAGACCATCTGGTTGGAAACGTATACCTGAAGTTTCATCGTGAGGAAGACGCGGAGAAGGCCGTGATGGATCTGAATAACCGTTGGTTCAACGGTCAACCAATCCACGCCGAGCTCTCTCCCGTTACAGACTTCAGAGAAGCCTGCTGCCGCCGGTACGAGATGGGGGAGTGCACTCGAGGAGGCTTCTGTAACTTCATGCACCTGAAACCCATCTCCAGGCAGCTGAGGGAGCTGTACGGTCGCCGCAGGAAGAAGGGaggGGGCCATCGTTCTCGCTCCCGTTCCAGGGAACGCCGTTCTCGCTCGAGGGATAGAGGCAGGGGAGGCGGACGTGACCGCGAGAGAAGGCGTTCCAGAGAACGCTCTGGCAGGTTCTAAACCAAGCCACCACTTCACGTGCATCCCTTCCATCTCCATTATCATTCTGCATCATCCTCAAATCCATATCTTTCCCTCCATTGCTGCCTTTTCAATTCCCTGTTGGCCCTTTCATATTGTCCCAATGACTAAAATTAATTGGAAAATGTTGGACTTgttattttccttttttttatCATTTTTATTCAAGAAATGTAAAGCTTGCCttctcaataaaaaaaaaaaagtaaacct
>XM_021597862.2
ggTGAACTGTTCTTTCTACTTTAAAATTGGTGCCTGCCGACATGGTGACCGGTGCTCCAGATTACATAATAAACCAACTTTCAGCCAGACCATCTTGATTCAAAACATCTACCGTAATCCCCAAAACAGTGCGCAGACGGCCGACGGCTCCCACTACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACACTGCCCAGTCTGCCGATGGTTTGCGCTGTGCCATCAGTGATGTGGAGATGCAGGAGCACTACGATGAGTTCTTTGAGGAGGTCTtcacagagatggaggagaagtacggagaggtggaggagatgaATGTGTGCGACAACCTGGGAGACCATCTGGTTGGAAACGTATACCTGAAGTTTCATCGTGAGGAAGACGCGGAGAAGGCCGTGATGGATCTGAATAACCGTTGGTTCAACGGTCAACCAATCCACGCCGAGCTCTCTCCCGTTACAGACTTCAGAGAAGCCTGCTGCCGCCGGTACGAGATGGGGGAGTGCACTCGAGGAGGCTTCTGTAACTTCATGCACCTGAAACCCATCTCCAGGCAGCTGAGGGAGCTGTACGGTCGCCGCAGGAAGAAGGGaggGGGCCATCGTTCTCGCTCCCGTTCCAGGGAACGCCGTTCTCGCTCGAGGGATAGAGGCAGGGGAGGCGGACGTGACCGCGAGAGAAGGCGTTCCAGAGAACGCTCTGGCAGGTTCTAAACCAAGCCACCACTTCACGTGCATCCCTTCCATCTCCATTATCATTCTGCATCATCCTCAAATCCATATCTTTCCCTCCATTGCTGCCTTTTCAATTCCCTGTTGGCCCTTTCATATTGTCCCAATGACTAAAATTAATTGGAAAATGTTGGACTTgttattttccttttttttatCATTTTTATTCAAGAAATGTAAAGCTTGCCttctcaataaaaaaaaaaaagtaaacct
>TU330553
ATAGGATCGAAAATGGCGGAGTACCTGGCGTCCATTTTCGGTACAGAGAAAGATAAggTGAACTGTTCTTTCTACTTTAAAATTGGTGCCTGCCGACATGGTGACCGGTGCTCCAGATTACATAATAAACCAACTTTCAGCCAGACCATCTTGATTCAAAACATCTACCGTAATCCCCAAAACAGTGCGCAGACGGCCGACGGCTCCCACTACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACACTGCCCAGTCTGCCGATGGTTTGCGCTGTGCCATCAGTGATGTGGAGATGCAGGAGCACTACGATGAGTTCTTTGAGGAGGTCTtcacagagatggaggagaagtacggagaggtggaggagatgaATGTGTGCGACAACCTGGGAGACCATCTGGTTGGAAACGTATACCTGAAGTTTCATCGTGAGGAAGACGCGGAGAAGGCCGTGATGGATCTGAATAACCGTTGGTTCAACGGTCAACCAATCCACGCCGAGCTCTCTCCCGTTACAGACTTCAGAGAAGCCTGCTGCCGCCGGTACGAGATGGGGGAGTGCACTCGAGGAGGCTTCTGTAACTTCATGCACCTGAAACCCATCTCCAGGCAGCTGAGGGAGCTGTACGGTCGCCGCAGGAAGAAGGGaggGGGCCATCGTTCTCGCTCCCGTTCCAGGGAACGCCGTTCTCGCTCGAGGGATAGAGGCAGGGGAGGCGGACGTGACCGCGAGAGAAGGCGTTCCAGAGAACGCTCTGGCAGGTTCTAAACCAAGCCACCACTTCACGTGCATCCCTTCCATCTCCATTATCATTCTGCATCATCCTCAAATCCATATCTTTCCCTCCATTGCTGCCTTTTCAATTCCCTGTTGGCCCTTTCATATTGTC

Function

NR:

description
splicing factor U2AF 35 kDa subunit-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472992.2 False 1049 mRNA 0.49 8 70057383 70070331
XM_021597860.2 False 1080 mRNA 0.47 8 70057402 70070470
XM_021597859.2 False 1072 mRNA 0.47 8 70057410 70070470
XM_021597862.2 False 953 mRNA 0.50 8 70060415 70070470
TU330553 True 896 TUCP 0.53 9 70057540 70070357

Neighbor

gene id symbol gene type direction distance location
LOC110520491 LOC106586687 coding upstream 22626 69980268 ~ 70034765 (+)
LOC110504602 LOC106586683 coding upstream 133576 69915810 ~ 69923807 (+)
LOC110520485 dynlt3 coding upstream 187171 69861894 ~ 69870212 (+)
LOC110504579 LOC106582139 coding upstream 287737 69731759 ~ 69769646 (+)
LOC110504569 rpgr coding upstream 325726 69712348 ~ 69731657 (+)
LOC110520495 LOC106586691 coding downstream 2334 70072804 ~ 70092807 (+)
LOC110518747 LOC106586693 coding downstream 161085 70231555 ~ 70314000 (+)
LOC110520498 LOC100194560 coding downstream 221370 70291840 ~ 70293566 (+)
LOC110520505 LOC106586712 coding downstream 393294 70463764 ~ 70539757 (+)
LOC110520506 LOC106586710 coding downstream 479799 70550269 ~ 70555181 (+)
G291490 NA non-coding upstream 85450 69971698 ~ 69971933 (+)
G291376 NA non-coding upstream 111251 69871693 ~ 69946132 (+)
G291444 NA non-coding upstream 162452 69893855 ~ 69894931 (+)
G291440 NA non-coding upstream 169166 69887811 ~ 69888217 (+)
G291960 NA non-coding downstream 26323 70096793 ~ 70096999 (+)
G291961 NA non-coding downstream 26902 70097372 ~ 70097582 (+)
G291971 NA non-coding downstream 33704 70104174 ~ 70104373 (+)
G291995 NA non-coding downstream 50876 70121346 ~ 70122502 (+)
G292005 NA non-coding downstream 71712 70142182 ~ 70142708 (+)
G291461 NA other upstream 105215 69949667 ~ 69952168 (+)
G291327 NA other upstream 361547 69695395 ~ 69695836 (+)
LOC110520478 LOC106586673 other upstream 427014 69625755 ~ 69635303 (+)
LOC110520507 senp7 other downstream 506648 70576887 ~ 70597458 (+)
G293204 NA other downstream 1295713 71366183 ~ 71366423 (+)
il1rapl1a LOC106586724 other downstream 1385971 71280049 ~ 71706686 (+)
G293450 NA other downstream 1667335 71737805 ~ 71738175 (+)
LOC110520522 LOC106586718 other downstream 1897278 71947367 ~ 71975611 (+)

Expression


Co-expression Network