LOC110520496 (LOC106586692)


Basic Information

Item Value
gene id LOC110520496
gene name LOC106586692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70125298 ~ 70135532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975048.1
TGTGGCTGTCTGCATTCCACAGGAGCGCACAGGCAGACCGAACAGTGCGGTAGCCGGGGTTGTGACCGGCCAAATTAACCTGTAAATAGTTCTAACTGATACGGCTGGCACACTTTAGTGTACACTTCAGTGTACATTTATGTAGATATTTCTTTAAAAGAAGGAAAATAAAAAAAGTGAAATGCTGTTTTTCATTATACTTTTCTCATATTTACTGCAACTAATATCCTTATAGAATGACTTGTATAGCTGTCTGTAACAACCGATTAAACTGTGAGAGGAGCTGGTGCACCTACATCCAATAAGGTACTACACACAATTTTTATCCTATCCTTTGGAATATAATAATCATCATGGTGATCATGACGGAGAGCAGCCAGGGGGCCCAGCCCAACCATACCCAGGGAAGGCCTCTCCAGGTCGGCTTCTATGAGATCATAAGCACGCTGGGGAAAGGAAACTTTGCCGTGGTCAAACTGGCAAGGCACAAAGTCACCAAAACACAGGTGGCCATAAAGATCATTGACAAGACGAGACTAAACCCATCCAACCTAGAGAAGATCTACAGGGAGGTCCAGATAATGAAGCTGCTTAACCACCCCCATATCATCAAACTCTACCAGGTAATGGAGACTAAAGATATGCTGTACATTGTGACAGAATACGCCAAAAATGGAGAGATGTTCGACTACTTGACCTCAAACGGGCGCATGAGCGAGGACGAGGCGCAGAAGAAGTTCGGGCAGATTCTGACGGCAGTGGATTACTGCCACAGGCACCACATCGTTCACAGAGACCTCAAAACTGAGAATCTACTGCTGGATGCCAACATGAACATCAAACTGGCCGACTTTGGATTCGGTAACTTCTACAACGCAGGCGAGCCCCTGTCTACGTGGTGCGGCAGCCCCCCTTACGCAGCACCCGAGGTGTTCGAGGGGAAGGAGTACGAAGGGCCACAGTTGGATATCTGGAGTCTGGGTGTGGTTCTGTACGTTCTCGTGTGCGGTTCCCTTCCGTTCGACGGGCCCAGCCTCCCTGCTCTCAGACAGAGAGTCACAGAGGGGCGCTTCAGAATCCCCTTCTTCATGTCTCAAGACTGTGAGAACCTGATCCGTAGGATGCTGGTGGTAGACCCAGCTAAGAGGATCAGTGTGGCCCAGATCAAGCAGCACCGCTGGATGCTGGCTGACCCCACAGCTCTTCACCAGACCCTCAGCATGACCCTTCCCCTCACAGACTACAACTCTAACCTGGGGGACTACAGCGAGCCTGTCCTGGGCATCATGCAAACCCTGGGCATTGACCGCCACAGGACCATTGAGTCTCTGCAGAGCAGCAGCTACAACCACTTCTCAGCCATCTACTACTTACTGTTGGAGAGGATCAGGGAGCACCGAGCCCAGCAGCTCAGCCGTCAGTGTGGACCCTGGAACCAGAGACCCAGGAGCACCTCTGACTCCGGTACCCCAGAGGTCATCATGGAGGACAGCTTCAGACCTTCAGCCTACCCCATTCAATGCAAGAGTACCCCTCCCATGCACGCGGAGATGGAATATGACCAAGGTGCATTGTTCCAACGTGTGGTGTTCCCGGTGGAAGCCAGTCTGAACCGACTGCTGTGTAACCGCTCCATCTCCCCCAACAGCCTGGTGGAGACCAGCATCAGTGAAGAGGTGCGGCCCCGCGACCTGGAGGAGGaggtcacacacacctgctcGGCCCTCGTCCTGCCCACCACCACCTCCCGGCGACACACCCTGGCCGAGGTCTCTGCTCGCTTCCACCAGTGCAACCCCCCCTGCATCGTTGTCAGCCCCTCCGATGGTGCGTCGTCTGACAGCTGTCTGAGGTCCTCGTCCACCCCCAACCCCGCTCTGCACCCCGCTGTAGGTGGCCTGTCAGCCGTGCTGGCCATTGGGACTGAGCCTGGGGCACTGGTCCCCGCCGATAGCCCACCGGCCCTCTCCTGTCACCTCCTCCCCCAGGCTCAGGCTGCCAGCTTCCAAGAGGGCCGCAGAGCCTCCGACACCTCCCTGACACAAGGTCTGAAAGCCTTCCGCCAACAGCTGAGAAAGAACACGCGCACTAAAGGCCTTCTGGGTCTGAATAAGATCAAAGGTCTGGCGAGGCAGGTCTGCCCTCCGACCTCCGACCGCAGTAGCCGTGGCACCTGGGGATCATTAGGCCCCACCATCAGTGAGCACCGCAGCATGCTGGAGGAAGTTCTGCACCAGCAAAGGATGCTCCAGATCCAGCACAAGCCCCAACCTCAGCCTCCTTGGCCAGCACCTACCCAGAATCCCCCGCTCTTCCTGACCCAGCAGcagcccccctcccccacctcagTCTTCGCCGCCCCCTCCACCCTGTTCGACAACCccgccccctccctcctccagggGGAACCCCAACACACCCTGCCCTCCCACCAGAGCCCCCTGGCTCTCCAGCATGCCTTCTGGCAGCAACCTCTGGAGTTATCTTCACCCTCCTAtggctcctcttcctcctgctcctcctcttcctcctgctcctcctcttcctctctctcccctgtgggTACTGCTGCTTACCTCCTCGAGGCTCGACTGCACATAAGCCAGCAGTCCAGCCTCTACCTCGAGACCAACCTCTACCACCAGACCAACCCCCAGGACCAAGCCCAGGACCAGACCCAGGCTTTCACCAAGGGCCCCTTCCCCCTCATGCCTATGCAGGGGATGTGGAGTCTGGATTCAGCCTCCGGGAGAGAGTCTGAGATGCAGGAGCTGGGCTGCGGTGGACAGCAGCAGCTGAGAAGCTGTGTGATGGTGAAGTAATGGGGGGAAAGAAAGGAGAAGCAGAAAACAACAACTTCTTATTGGAACAGAGTGATTGTTCTGCATGAGGACAAAATGTCCTGGTGATGTCATCACTGATGGACAGGAAGGGTAAGCGCTTTTTGACAGTGGGAACAGAACTTTGAGACGTGGAGCTTCTCACAGACCATCAGATGATGAGCAGATGACGACAGATCAGATCCTCTAAAAGTGTGAAAAGAGAACAATTGGGTAGAAAAACTGAGCAAAGTGGAGATAGATTTTTTTAAACTGATGCAAGTCACAAATCTACACTCTTGAACAACATGCAAACACACATctagttgtgtgtgtctgtgtgtgatcacATAAGCTGAGAATTAAGCAATAACCAAACTCTGGAGTGACGGCTCTGAGGTCTCATCCGAACCCCCAGAGAAGCAATAAAGGTCTGGGACCCCCTCAACACAACAGGGGACCTCCGTTCCTCTCCTTTGTCCCTGATGGGGACCCCAACTCACCCCTGTCCCGCTGGGGAGGGGTGAGTGAAGGACTAGTCTTGAAACCCCAACGAGGACTGGTATCAATGTACCATACTAGATCATTTAAGACCTATTTCAAcagtttcatttttatttttttcatcaagtTTGAAAACAGGAGGATCCAGTCTTCCTGATTTTGTTTTGTGTTACTTTTCCAGTTTtgctcactgtatatagaccttaATTACTTATTACTTATTGTTTTCACTTAATTAGAAAAGACCAaagttatttctttatttttactttgtTTGTCTTTTGGAGAAGATATgacttattggtcacatacacatgtttagcaggtgttattgtgggtgtagcgaaatgcttgtgttcttagctccagcagtgcagtaatatctaaccatacacaacaatacacaccaatctaaaagtaaaagaatggaatttaGAAATATAGTAACATTAGGAGTAGGAGTATATTGGtgttataattatatatatatatatacacacatat

Function

NR:

description
serine/threonine-protein kinase SIK2-like isoform X1

GO: NA

KEGG:

id description
K19008 SIK1; serine/threonine-protein kinase SIK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975048.1 True 3827 mRNA 0.52 11 70125298 70135532

Neighbor

gene id symbol gene type direction distance location
LOC110520492 LOC106586689 coding downstream 76905 70035040 ~ 70048393 (-)
LOC110520490 LOC106586686 coding downstream 154125 69949665 ~ 69971173 (-)
piga LOC106586684 coding downstream 186442 69933697 ~ 69938856 (-)
asb11 LOC106586685 coding downstream 191938 69927661 ~ 69933360 (-)
LOC110504590 lancl3 coding downstream 214137 69907305 ~ 69911161 (-)
LOC118964359 NA coding upstream 84798 70220330 ~ 70220464 (-)
LOC110520510 tfg coding upstream 635624 70771156 ~ 70806540 (-)
jagn1a LOC106586704 coding upstream 671817 70807349 ~ 70810049 (-)
LOC110520512 col8a1 coding upstream 675072 70810604 ~ 70837491 (-)
LOC118964322 NA coding upstream 760977 70896509 ~ 70907574 (-)
G292214 NA non-coding downstream 4569 70120408 ~ 70120729 (-)
G291884 LOC106586687 non-coding downstream 90535 70030764 ~ 70034763 (-)
G291896 NA non-coding downstream 153373 69971661 ~ 69971925 (-)
LOC110520487 NA non-coding downstream 230255 69892951 ~ 69895131 (-)
G292252 NA non-coding upstream 74035 70209567 ~ 70210180 (-)
G292256 NA non-coding upstream 79867 70215399 ~ 70215747 (-)
G292272 NA non-coding upstream 108337 70243869 ~ 70252589 (-)
G292274 NA non-coding upstream 112653 70248185 ~ 70248966 (-)
G292277 NA non-coding upstream 148124 70283656 ~ 70284188 (-)
G291977 NA other downstream 17348 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 128693 69980346 ~ 69996605 (-)
G291138 NA other downstream 868754 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 1274444 68846611 ~ 68850854 (-)
G290602 NA other downstream 1400384 68721808 ~ 68724914 (-)
G292753 NA other upstream 584504 70720036 ~ 70720591 (-)
G292919 NA other upstream 892087 71027619 ~ 71040152 (-)
G293984 NA other upstream 1767782 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 2037517 72121974 ~ 72206818 (-)
G294451 NA other upstream 2435717 72571249 ~ 72575432 (-)

Expression


Co-expression Network