Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110518747 |
| gene name | LOC106586693 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 70231555 ~ 70314000 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: tetraspanin-7-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036975051.1 | False | 2025 | mRNA | 0.45 | 8 | 70231555 | 70251197 |
| XM_036975052.1 | False | 1747 | mRNA | 0.44 | 8 | 70231555 | 70251197 |
| XM_036975050.1 | False | 1755 | mRNA | 0.44 | 8 | 70231556 | 70251197 |
| XM_036975049.1 | False | 2032 | mRNA | 0.45 | 8 | 70231557 | 70251197 |
| XR_005051366.1 | False | 2598 | mRNA | 0.45 | 9 | 70231557 | 70281289 |
| XR_005051365.1 | False | 2554 | mRNA | 0.55 | 10 | 70231557 | 70314000 |
| XM_036975053.1 | False | 1943 | mRNA | 0.45 | 8 | 70231739 | 70251197 |
| XM_036975055.1 | False | 1973 | mRNA | 0.45 | 8 | 70240703 | 70251197 |
| XM_036975054.1 | True | 2127 | mRNA | 0.45 | 8 | 70243107 | 70251197 |
70,160,000
70,170,000
70,180,000
70,190,000
70,200,000
70,210,000
70,220,000
70,230,000
70,240,000
70,250,000
70,260,000
70,270,000
70,280,000
70,290,000
70,300,000
70,310,000
70,320,000
70,330,000
NC_048567.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520495 | LOC106586691 | coding | upstream | 138748 | 70072804 ~ 70092807 (+) |
| LOC110520493 | LOC106586690 | coding | upstream | 161085 | 70057383 ~ 70070470 (+) |
| LOC110520491 | LOC106586687 | coding | upstream | 196798 | 69980268 ~ 70034765 (+) |
| LOC110504602 | LOC106586683 | coding | upstream | 307748 | 69915810 ~ 69923807 (+) |
| LOC110520485 | dynlt3 | coding | upstream | 361343 | 69861894 ~ 69870212 (+) |
| LOC110520505 | LOC106586712 | coding | downstream | 149764 | 70463764 ~ 70539757 (+) |
| LOC110520506 | LOC106586710 | coding | downstream | 236269 | 70550269 ~ 70555181 (+) |
| LOC118964320 | NA | coding | downstream | 241484 | 70555484 ~ 70564655 (+) |
| LOC110520507 | senp7 | coding | downstream | 262887 | 70576887 ~ 70597458 (+) |
| LOC110504631 | LOC106582154 | coding | downstream | 298151 | 70612151 ~ 70655881 (+) |
| G292052 | NA | non-coding | upstream | 8041 | 70216619 ~ 70223514 (+) |
| G292005 | NA | non-coding | upstream | 88847 | 70142182 ~ 70142708 (+) |
| G291995 | NA | non-coding | upstream | 109053 | 70121346 ~ 70122502 (+) |
| G291971 | NA | non-coding | upstream | 127182 | 70104174 ~ 70104373 (+) |
| G291961 | NA | non-coding | upstream | 133973 | 70097372 ~ 70097582 (+) |
| G292105 | NA | non-coding | downstream | 19362 | 70333362 ~ 70333696 (+) |
| G292106 | NA | non-coding | downstream | 21402 | 70335402 ~ 70335698 (+) |
| G292109 | NA | non-coding | downstream | 23203 | 70337203 ~ 70337440 (+) |
| G292110 | NA | non-coding | downstream | 24032 | 70338032 ~ 70338291 (+) |
| G292112 | NA | non-coding | downstream | 29673 | 70343673 ~ 70343904 (+) |
| G291461 | NA | other | upstream | 279387 | 69949667 ~ 69952168 (+) |
| G291327 | NA | other | upstream | 535719 | 69695395 ~ 69695836 (+) |
| G293204 | NA | other | downstream | 1052183 | 71366183 ~ 71366423 (+) |
| il1rapl1a | LOC106586724 | other | downstream | 1142441 | 71280049 ~ 71706686 (+) |
| G293450 | NA | other | downstream | 1423805 | 71737805 ~ 71738175 (+) |
| LOC110520522 | LOC106586718 | other | downstream | 1653748 | 71947367 ~ 71975611 (+) |
