LOC110504631 (LOC106582154)


Basic Information

Item Value
gene id LOC110504631
gene name LOC106582154
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70612151 ~ 70655881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965159.1
tttttatTAAGAGTGTAGATGTGGAGGAAAAGCAGTGAGGGTTGGGTAGGTAGCTGCAGGTCATTGGGTTGGTGACTTGTAAGCTGATTTATGGAGAAGGGTTACATCACTGGTTTGGCATTGGCATGACAGTGGAGAGTGATACTGAGGTCAGGAAGATAGGCACACAGCAAGTCTGCGTAACCACAACCCTGCTGTGGCAGGGCTAAACATGGAATCAGTTAACTCTAACCTGGTGGGGGGTATGTACTGTAACACTTATAGTCACACTGTGATCGACACATGAGCTAATATGCCAGCTAAGATTTACCTCAGGGGTCACAGCTCTAGAACTAGACAGCCACAGCCTGCGCACTGTAGTTTTCATCAATGCCCCTTGTAATCCTTAGAGACAGAAAGAATGGGTTCTTTCACCAATATGTgacgtgtgtgtttagtgtgtcaggagACGGTGTGGGAGGCCTTCAAGATCTTCTGGGATCGCCTCCCAAACCAGGAAGAGTACCAGACCTGGATGAGCCAATGCCTGGACGGCACAGCCACCGCTCTGGCGATGGGCAAAAACTTTAGCCAATCAAAGGAGCACCTGGCCCTGGTTGAGAGTAGAATGTTGCTGACAAGGTCAACAAGTGAGCCCAACAACTCATGGCTACATATGTGCAGCACCTCAACTCCAGCCACAGAACAGGAGGCTCAAGGAGAGGTCATCATAGAAGGGGCAGAGGTGGAGCTTCCCACAGAACCCACCAATGACATAGAGGTGGAGCTTCCCACAGAACCCACCAATGACATAGAGATGGAAGTGTTGGTGTGGCCTACTCGGGCCCAGTTGGAGCAGGTGGTTGAGCTGAGTATCTTGCtgaagggagagaggtacagcGATGCTCTAAGAGACACTGCCAGCTTCCAGTACCAGACACTCAACCAGCAGTTCATTGACAAGATAGAAGATGCTCTGGGGGGACTGCCAGGCTTGAAGAGTGTGACTGTGCTGGAGTTCAGGTTGGATGGCGTAGTGGTGGTCTATGCGGTGACGGTGGAGGTGGAAGGGGAGGGGGTGAGCAGTGAGCAGTTGGACTACCTGACCCTGCAGTCCAACCTGGTGGAGAACTCCTACAGAGAGCTGAAGGAGAGGCCCACAGTGGTCTACAACATCACTGACTTCAGGAACAACATCACTGAGCCCCTGCTAAATGACAACATCATCAGAGACATAACCCTGGCCCGGGACCATGACTTACTGCAACTAGAGAGTGTGTCCAGTGTTCCTGAGTCCATCGAGTCCACGGCTGGAATTACCAAGGATGACTGCTTGGAGGAAATCTTGGCTACTGAGATGACCCCAGATGCCTCTGAGGTTGAAGCTGAGGATGTGGCGACGGGGGAGAATGATGTCATCATTCTGGAGGAGAGCGTGACCCTCCCCCCTGAGCCAGAGGTGACCATCGATGACacggggatggaggaggagggtctGCTGTTGGGGAACACTGTGGCTATAGAGAGCCCTCCCCCGGAGCTCCTCCCTGCAGACCCTGTCTCCCCCGAGCAGCCAGAGGGCACTACGCTCCCCAAGCCTCCTCTGGAGATAGAGGCCTCTGGGTCAGGTGTTGATAGACTTGAGGACCTGCCCTTCCAGCCCgaggaagaagaagagacttcCTCAGCTGCAGAAGAGGAACATACCATAGAAGAAGAGGTAGTTTTGGAAAAGGTGATCATAGAGGAAGAGATCTTAACAGAGGAAGCAGAATCGGAGGTCCCTGAGGAAGAGCAGGTAGAGGAGGAAGCAGTGGAGGTccctgaggaagaggaggtaaAGGAGGAAGCAATGGAGGTccctgaggaagaggaggtaaAGGAGGAAGCAATGGAGGCccctgaggaagaggaggtagaggaggaagtaGTGGAGGTCCCTGAGGAAGAGGTGGTAGAAGAGGAAGTAGTGGAGGTCCCTGAGgaagaggtggtagaggaggaagcAGTGGAGGTTcctgaggaagaggaggtagaggaggaagcaGTGGAGGTccctgaggaagaggaggaagcagTGGAGGTccctgaggaagaggaagaagcagTGGAGGTCTCTGatgaagaggaggtagaggaggaagtaGTGGAGGTccctgaggaagaggaggaagcagTGGAGGTccctgaggaagaggaggaagcagTGGAGGtctctgaggaagaggaggaagcagTGGAGGTccctgaggaagaggaggaagcagTGGAGGTctctgaggaagaggaggtagaggaggaagcaGTGGAAGTCCCTGAGgaagaagaggtagaggaggaagtaGTGGAGGTCTCTGATACTGCAGAGGTTCTAGAAGAAGCTGAACCCTCAGAAAACCTTGAGTATTACATCCgagagacagagaccatagaAGAGTTGGAGAAAGTGAACCCTGCCTTTGTCCCTGTGGAAACGATGGATAATCCCGAGCCAGCGGAGAGTCTTAATGTCCCCGAGAATGCCATGGAGACTGTACCCCCAGATGAGCCTGAAGAAGAGGCTAACGAGGTGTTGGGTCATCCAGAAATATCAGGATATGGAGAGGAAGTTAAGAGCTTAGAGGAGGGACCAATCATCGAGGAGCCAGTAACTGGAGAGGATGCcttggaggtggaggaagaggtggCAAAAGAAGAAGTGGTGATGGAACTTCTGGACATGACTGAGACCTCGGTGGAGGACCTGGTAGAAGATGAGGTTATGTTGGTCGACGAGGctgttccagaggcagtttaCCCTAACACTCTTTCTGCAGAGAAGGAGTCGCCCTTCACCCAAGTCTCTGATGCCATAGTAGAAGAAGAGGCAACAGAGGCCACAGGCCTAGACACAGCCCCAGAACCGGAGGCAGAAGCAGAGGACCAGGGAGTCACCCCAGCTCTCACACCTGCCAAGTATTTCCCTGGCCCAGACATTTCGATCACTCTGGAGCTGCAGACGATCGACCCTGTGACAGACTATGACCTGGTCTCCTTCGGTGGCACCAACCAAACAGAGGAGGGAAGCAGCGGGTACCCCTCTGGAGGGGTACATGGTGTGGACCACAGCGTTGCCATGCCAATCAACCCTGGGCGGGCGCTGATGGTGTTCTTCAGTCTGAGGGTAACCAACATGAAGTTCTCAGATGACCTCTTCAATAAGAGCTCCCCGGAATACAAGGCCCTGGAACAAAggttcatagagctgCTGCTCCCCTACCTCCAGTCCAACCTTAGTAACTTCCAGAACCTGGAGATCCTGAACTTCCGGAACGGGAGTATTGTGGTCAACAGCCGGATGAAGTTCGGGAAGCCGGTGCCTCGCGGCGTCAACAACGCAGTCTACCTGATCCTGGAAGACTTCGCTAACACAGCCTACAAGACCATGAACCTGGCCATCGACAAGTACTCACTGGACGTAGAGTCAGGTGACCAGGCGAACCAGTGTAAGTTCCAGGCGTGTAATGAGTTTGCACAGTGTTCTGTGAACCGCTGGTCTGGCGAggcggagtgtgtgtgtaacGCTGGATACTTCAGTGTGGACGGACTGCCCTGTCAGAGCATCTGTGACCTACAGACAGACTTCTGTATGAATGACGGGAAGTGTGACATCATACCTGGACAGGGGGCCATCtgcagATGTCGTGTAGGGGAGAACTGGTGGTACCGTGGAGAACACTGTGAGGAGTACGTGTCAGAACCACTAGTGGTCGGCATAGCGATTGCCTCCGTAGCCGGTTTCCTATTGGTGGCTTCCGGTGTGATCTTCTTCCTGGCGAGGACACTACGGGATCAGTACGATAAGGATGAGACAGAAGACCCCTTACGGCGAGGGGAGAGTATCCCGTCTCTAGAGAGGGCCACTAAGTACAACCCCATGTATGAGAGTGAGGCTACGACGGGCTATAGCCACTACTACCGCCGCTACCCAGAAGCCCCGGTCTACAGCAGCGCCAGCGCTGAGGCCTCCACAGACTTCAGCAGTGAGGAGATACGCCACATCTACGAGAACAGCGAACTGACCAAGGAgGAAATCCAGGACAGGATCCGCATCATCGAGCTCTACGCGAAGGACCGGCAGTTTGCAGACTTTGTGCGGCAGCATCAAACTGCCCTGGATACACGCAGAGAGAGCGCTCTTGATACACGCAGAGAGAGCGTGTCCACGTAGACCTGTACGGGACTCTCAGCTGTATGCCTTGAAAAACGGGGTGCCCTATTCTCTTGTCCCGCCCTTCTTCCTCTTTTCTCAGTGTCTTCTCTCGATTGGGTGAGCTCTGCTGGAATGGGTGTGGTGGCTGGGGGCAGATCCGCTGCTCATTGGATGTCTTCCTTTTGGGGGAAGACCCGCCTCCCTCCATTTGGAATCATATTTGTTGCCTGAAATGATGACATACAAAATGCAATGCTGTCTAGGATACCTGTTCTTCAGGTAGCAGATAAGACATGATAAAGTCTTTATTTTGCATTTAACATCATATCTCAGCTCATAGGGGTTGAGGAAAGTGTGAATGTTGGATGTGTACTTTAATGTGTCATTGTCACTGTATCTGCTGTTGTACATATTATGTATGAACTAGAGCCAGTTCTCAAAGTAATGGTTTATACCAGGGGTGCATAACTCAGGCCTTCAGGTAACTCAGGCCTTCAGGTAACTCAGGCCTTCAGGTAACACAGGTCCTCTGCAGGGACTAAAACCAGCCGATATTGTTGCCCTCTGGACCAGAGCTGTGTGCCCTTGTTCTATACACAGCTGTAGGTTGTGGGAGATTGAGAGCAGCTGACTGGCCAGTGTCTGTGCTGTCCTTGGTGCTATGGGGCCTGTCTCTGTTGTCTGGGTTTCCGGGCAGTAGTAAGCCTGGGTAGTGTTCTCCTGAAGTTGGGGAGAAACTTGCTTGATGCACTTTGTTGGCAAATCTCAAGTCTCAGCCATGTATGGCACTGGTgagaagtagtgcactttattTCAGGAAAAGTGGAAAATGTAGGGTAAATCTTCCATTTTAATTCTGCTGCAATAAattcccttctttctctccctttctctctcactctacatCAGGAATCAGTTTGTTTTCGGTAGAAATAAAATGttacgagagggagggagatggcgAGCGCgattagagagagacagggagagaggggagagatcgagaggaaagaggggagagagagagggaaaagaggggagagaggggagaggagagagagagagggaaaagaggggagagggagcacagagagagaaatattttGCCCGAGGACCAAAATATAAAAGAAAACACATTTAGAATGGAAACAATCTTCAAGGGAAAAGAAAGCAAACCAAAGATTTGATCAGGCTGTCTTTTTTCAGATATAATGCCATAGAAAACATTCAAAAAAGAGCATTAAATGTAAATGGCTACACAACATGTGCTCTGTGGAGAAGCAAACTCTTAGCTGCAGCTTTTACTTCAATTGAATTCACCAGCAATGTGAAAAGGTCCATTCTGGAACCACTAGTTTGACCATTATCCATGACTTTCAACCTGTTAGCATTTCACATCGAGAGGAGTGGTTTCCATGTTGTTCCTTTGGTACTTTCATCTGTTCCTCCACGGGGTCACTTGCTTGACCCTTATGTCCAGAGTGAATCCTCAAAGTTGCAACTCTTCACGCTATAGATTGACTTTATCACGTTTGTTTTGAATGTGAATAGTCATAGGTCATAAGAATATACAGAACGAatctcaaatggcaacctattccctatatagtgcaccacttgcctgaagtagtgcaccatataaggTAAAAGGTCCAATTTGGGACGTAGCCACAGAAATCTAGGAGATATTTAATGTTTTATGTTCATGttttcctgtcctcttctctcagtcCTCTGTATGTCTCCCCGTAAGTGAAAACACAGGTTATTCTGGTAAAGCATGCTCTTACCTTCCACTTATGACAAAGGCATGCCTTTGCAATCTGTGTGTgcatttttatatacattttttggTGTGCATAAAGTGCAGTACTTGCAGTTTTGTCAATGTTTATTCTTAAAAAATTTAGATTAAAACAAAGCAAtgattaaaaataca

Function

NR:

description
interphotoreceptor matrix proteoglycan 2

GO: NA

KEGG:

id description
K19017 IMPG2, SPACRCAN; interphotoreceptor matrix proteoglycan 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965159.1 True 6110 mRNA 0.50 16 70612151 70655881

Neighbor

gene id symbol gene type direction distance location
LOC110520507 senp7 coding upstream 14693 70576887 ~ 70597458 (+)
LOC118964320 NA coding upstream 47496 70555484 ~ 70564655 (+)
LOC110520506 LOC106586710 coding upstream 56970 70550269 ~ 70555181 (+)
LOC110520505 LOC106586712 coding upstream 72394 70463764 ~ 70539757 (+)
LOC110518747 LOC106586693 coding upstream 298151 70231555 ~ 70314000 (+)
LOC110520508 abi3bp coding downstream 55250 70711131 ~ 70769507 (+)
LOC110520514 dcbld2 coding downstream 253476 70909357 ~ 70944650 (+)
LOC110520513 LOC106586698 coding downstream 306298 70962179 ~ 71002292 (+)
il1rapl1a LOC106586724 coding downstream 624168 71280049 ~ 71706686 (+)
LOC118964324 NA coding downstream 1152174 71808055 ~ 71810394 (+)
G292430 NA non-coding upstream 8594 70603181 ~ 70603557 (+)
G292427 NA non-coding upstream 25258 70586319 ~ 70586893 (+)
G292415 NA non-coding upstream 42401 70569515 ~ 70569750 (+)
G292414 NA non-coding upstream 42896 70569044 ~ 70569255 (+)
G292504 NA non-coding downstream 109566 70765447 ~ 70784159 (+)
G292505 NA non-coding downstream 110078 70765959 ~ 70766317 (+)
G292433 tfg non-coding downstream 114061 70769942 ~ 70838658 (+)
G292574 cmss1 non-coding downstream 299158 70955039 ~ 71009493 (+)
LOC110520493 LOC106586690 other upstream 541794 70057383 ~ 70070470 (+)
G291461 NA other upstream 659983 69949667 ~ 69952168 (+)
LOC110504602 LOC106586683 other upstream 690032 69915810 ~ 69923807 (+)
LOC110520485 dynlt3 other upstream 741939 69861894 ~ 69870212 (+)
G293204 NA other downstream 710302 71366183 ~ 71366423 (+)
G293450 NA other downstream 1081924 71737805 ~ 71738175 (+)
LOC110520522 LOC106586718 other downstream 1311867 71947367 ~ 71975611 (+)
G294147 NA other downstream 1593079 72248960 ~ 72249987 (+)

Expression


Co-expression Network