LOC110520510 (tfg)


Basic Information

Item Value
gene id LOC110520510
gene name tfg
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70771156 ~ 70806540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597886.2
TCACTACTGCGCGCTCCGCTGTATGCCACGTACAGGTTTACGTCGACAAGCGGGCAGACTTCCTCATGTGAGGCTAGGATTCTGTGTTTGCCAGCCCTGGTTAAATATTTTGGCTGACAAGGTCCTGAGAGAAATACCGACACAACAGTGGGATTAAGTCGTCCAGTTACAGAGGTGGGAGCAGTAGACTGTACCATGAACGGACAACTGGACCTGAGCGGCAAGCTGATCATCAAGGCCCAGCTGGGCGATGACATCAGACGCATCCCCATCCACAATGAGGACATCACCTATGACGAGCTGGTGCTGATGATGCAGCGTGTCTTCAGGGGCAAGCTGCAGAGCAACGACGAGGTCACCATCAAATACAAGGACGAGGACGATGACCTCATTACTATTTTCGACAGCTCGGACCTGTCTTTCGCCATCCAGTGCAGTAGGATCCTCAAACTCACTCTCTTCGTGAATGGTCAGCCGAGACCTCTGGAGTCCTGTCAGGTAAAGTACCTGCGTAAGGAGCTCATTGGCATCAGGAACAAAATTAACGGTCTCTTGGAATGTCTGGAGCCCCCCTCAGAACCTGGCCTGGCTGCCTCCGCACCAGACACGgactCGGTGGATGTATGTGAGGGGAGGGTGGTGGCAGCGGTGAAGCAGGCCCCGGTCCCAGTCAGTGCGGCCAGCATGTCGGCCTTCGACCCCCTGAATAAGCAGGACGAAGTCAGCAAGAACGTCATCTCCGCCTTTGGCCTGAGTGAGAACCATGTCTCAGctcccccGGGTGTTTCGTCTGTGGAGCGGTCAAATACTCCAGACAGCATTGCGTCATCGTCGTCCGCCGCCCCCCAGCCACAGGCCCCCTACGCAGGGATGCAGCAGGGACCCCCAGCAGCCCTCGACGGTCAGATGTACCAGCAGTACCAGTCTCCAGGTGGATACCCTCCCCAGCAGCCAGCACCGCAGCAGCAGTATGGCATGCCTGcagGATGCACCCCCCAGCCCGGCACCCCTCAGCCTCAACAGCAGCAGTTCCAGAACTACCCTGCCCCCACCTCCCAGGCCCCCACCCCCAGCCAGGGCCCAGCCCCCGGCTTTCAGGGAGGCCAACAGCAGGCCGCTCCACCCCAGGGTCCCCAGCAGTACCCCCCAGGTGCCTTCCCTCCCCAAAACTACACCTCCCAGGCCAACCAGCCTGCCAACTACAGCCTACCCCCCACCTCCCAGTCTGGCCAGGGTTACCAGGCCCGTCCCAGCTACACTCCTCCCCCCGGTAGCAACGTTACCCCCCCTCCTGGGGCGTCCAACCCCTATGCCCGCAACCGGCCCCCCTTCGGCTCGGGCTATGCCCAGCCTGGCCCTGGGTACCGGTAAAAGAGAAGGAATGGAAAACGTTATCCACCCACCCCTCCCCTTTGTGTCCTGGCTGGCTCTGTTTGGCCTGGGTTCGGTAAACATGGTCTGCTAATCGGTCCATCCGTCCTTCTGTCAGTCCTCAGTCACTGATGAGTCCATATCCAAAACAaactacaacccccccccccccccccccatctgatcGTCTGTGTTCTGTCTcgaccccaccaccacacacacaaacccatgtTATTGTCTGTCTcgaccccaccacacacacacacacacccacgttttattgtctgtgttctgtctcgaccccaccaccacacatacacacccatgtTATTGTCTGTCTCGACCCcaccaccacacatacacacccatgttattgtctgtgttctgtctcgaccccaccaccaca
>XM_036975066.1
GAGTCACTACTGCGCGCTCCGCTGTATGCCACGTACAGGTTTACGTCGACAAGCGGGCAGACTTCCTCATGTGAGGCTAGGATTCTGTGTTTGCCAGCCCTGGTTAAATATTTTGGCTGACAAGGTCCTGAGAGAAATACCGACACAACAGTGGGATTAAGTCGTCCAGTTACAGGTGGGATACATATAGCTGTCTGTTTCGATATGGCTAATATTGACAACCTGGATCACAGTTAGCATTTCAACCTAACGAATGATACTAGTATCGGAGGTGGGAGCAGTAGACTGTACCATGAACGGACAACTGGACCTGAGCGGCAAGCTGATCATCAAGGCCCAGCTGGGCGATGACATCAGACGCATCCCCATCCACAATGAGGACATCACCTATGACGAGCTGGTGCTGATGATGCAGCGTGTCTTCAGGGGCAAGCTGCAGAGCAACGACGAGGTCACCATCAAATACAAGGACGAGGACGATGACCTCATTACTATTTTCGACAGCTCGGACCTGTCTTTCGCCATCCAGTGCAGTAGGATCCTCAAACTCACTCTCTTCGTGAATGGTCAGCCGAGACCTCTGGAGTCCTGTCAGGTAAAGTACCTGCGTAAGGAGCTCATTGGCATCAGGAACAAAATTAACGGTCTCTTGGAATGTCTGGAGCCCCCCTCAGAACCTGGCCTGGCTGCCTCCGCACCAGACACGgactCGGTGGATGTATGTGAGGGGAGGGTGGTGGCAGCGGTGAAGCAGGCCCCGGTCCCAGTCAGTGCGGCCAGCATGTCGGCCTTCGACCCCCTGAATAAGCAGGACGAAGTCAGCAAGAACGTCATCTCCGCCTTTGGCCTGAGTGAGAACCATGTCTCAGctcccccGGGTGTTTCGTCTGTGGAGCGGTCAAATACTCCAGACAGCATTGCGTCATCGTCGTCCGCCGCCCCCCAGCCACAGGCCCCCTACGCAGGGATGCAGCAGGGACCCCCAGCAGCCCTCGACGGTCAGATGTACCAGCAGTACCAGTCTCCAGGTGGATACCCTCCCCAGCAGCCAGCACCGCAGCAGCAGTATGGCATGCCTGcagGATGCACCCCCCAGCCCGGCACCCCTCAGCCTCAACAGCAGCAGTTCCAGAACTACCCTGCCCCCACCTCCCAGGCCCCCACCCCCAGCCAGGGCCCAGCCCCCGGCTTTCAGGGAGGCCAACAGCAGGCCGCTCCACCCCAGGGTCCCCAGCAGTACCCCCCAGGTGCCTTCCCTCCCCAAAACTACACCTCCCAGGCCAACCAGCCTGCCAACTACAGCCTACCCCCCACCTCCCAGTCTGGCCAGGGTTACCAGGCCCGTCCCAGCTACACTCCTCCCCCCGGTAGCAACGTTACCCCCCCTCCTGGGGCGTCCAACCCCTATGCCCGCAACCGGCCCCCCTTCGGCTCGGGCTATGCCCAGCCTGGCCCTGGGTACCGGTAAAAGAGAAGGAATGGAAAACGTTATCCACCCACCCCTCCCCTTTGTGTCCTGGCTGGCTCTGTTTGGCCTGGGTTCGGTAAACATGGTCTGCTAATCGGTCCATCCGTCCTTCTGTCAGTCCTCAGTCACTGATGAGTCCATATCCAAAACAaactacaacccccccccccccccccccatctgatcGTCTGTGTTCTGTCTcgaccccaccaccacacacacaaacccatgtTATTGTCTGTCTcgaccccaccacacacacacacacacccacgttttattgtctgtgttctgtctcgaccccaccaccacacatacacacccatgtTATTGTCTGTCTCGACCCcaccaccacacatacacacccatgttattgtctgtgttctgtctcgaccccaccaccaca
>XM_036975067.1
TGAGTCACTACTGCGCGCTCCGCTGTATGCCACGTACAGGTTTACGTCGACAAGCGGGCAGACTTCCTCATGTGAGGCTAGGATTCTGTGTTTGCCAGCCCTGGTTAAATATTTTGGCTGACAAGGTCCTGAGAGAAATACCGACACAACAGTGGGATTAAGTCGTCCAGTTACAGGTGGGATACATATAGCTGTCTGTTTCGATATGGCTAATATTGACAACCTGGATCACAGTTAGCATTTCAACCTAACGAATGATACTAGTATCGGAGGTGGGAGCAGTAGACTGTACCATGAACGGACAACTGGACCTGAGCGGCAAGCTGATCATCAAGGCCCAGCTGGGCGATGACATCAGACGCATCCCCATCCACAATGAGGACATCACCTATGACGAGCTGGTGCTGATGATGCAGCGTGTCTTCAGGGGCAAGCTGCAGAGCAACGACGAGGTCACCATCAAATACAAGGACGAGGACGATGACCTCATTACTATTTTCGACAGCTCGGACCTGTCTTTCGCCATCCAGTGCAGTAGGATCCTCAAACTCACTCTCTTCGTGAATGGTCAGCCGAGACCTCTGGAGTCCTGTCAGGTAAAGTACCTGCGTAAGGAGCTCATTGGCATCAGGAACAAAATTAACGGTCTCTTGGAATGTCTGGAGCCCCCCTCAGAACCTGGCCTGGCTGCCTCCGCACCAGACACGgactCGGTGGATGTATGTGAGGGGAGGGTGGTGGCAGCGGTGAAGCAGGCCCCGGTCCCAGTCAGTGCGGCCAGCATGTCGGCCTTCGACCCCCTGAATAAGCAGGACGAAGTCAGCAAGAACGTCATCTCCGCCTTTGGCCTGAGTGAGAACCATGTCTCAGctcccccGGGTGTTTCGTCTGTGGAGCGGTCAAATACTCCAGACAGCATTGCGTCATCGTCGTCCGCCGCCCCCCAGCCACAGGCCCCCTACGCAGGGATGCAGCAGGGACCCCCAGCAGCCCTCGACGGTCAGATGTACCAGCAGTACCAGTCTCCAGGTGGATACCCTCCCCAGCAGCCAGCACCGCAGCAGCAGTATGGCATGCCTGGATGCACCCCCCAGCCCGGCACCCCTCAGCCTCAACAGCAGCAGTTCCAGAACTACCCTGCCCCCACCTCCCAGGCCCCCACCCCCAGCCAGGGCCCAGCCCCCGGCTTTCAGGGAGGCCAACAGCAGGCCGCTCCACCCCAGGGTCCCCAGCAGTACCCCCCAGGTGCCTTCCCTCCCCAAAACTACACCTCCCAGGCCAACCAGCCTGCCAACTACAGCCTACCCCCCACCTCCCAGTCTGGCCAGGGTTACCAGGCCCGTCCCAGCTACACTCCTCCCCCCGGTAGCAACGTTACCCCCCCTCCTGGGGCGTCCAACCCCTATGCCCGCAACCGGCCCCCCTTCGGCTCGGGCTATGCCCAGCCTGGCCCTGGGTACCGGTAAAAGAGAAGGAATGGAAAACGTTATCCACCCACCCCTCCCCTTTGTGTCCTGGCTGGCTCTGTTTGGCCTGGGTTCGGTAAACATGGTCTGCTAATCGGTCCATCCGTCCTTCTGTCAGTCCTCAGTCACTGATGAGTCCATATCCAAAACAaactacaacccccccccccccccccccatctgatcGTCTGTGTTCTGTCTcgaccccaccaccacacacacaaacccatgtTATTGTCTGTCTcgaccccaccacacacacacacacacccacgttttattgtctgtgttctgtctcgaccccaccaccacacatacacacccatgtTATTGTCTGTCTCGACCCcaccaccacacatacacacccatgttattgtctgtgttctgtctcgaccccaccaccaca

Function

symbol description
tfg Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within COPII vesicle coating. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 57. Orthologous to human TFG (trafficking from ER to golgi regulator).

NR:

description
protein TFG-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597886.2 False 1777 mRNA 0.59 8 70771156 70806536
XM_036975066.1 False 1874 mRNA 0.58 8 70771156 70806539
XM_036975067.1 True 1872 mRNA 0.58 8 70771156 70806540

Neighbor

gene id symbol gene type direction distance location
LOC118964359 NA coding downstream 550692 70220330 ~ 70220464 (-)
LOC110520496 LOC106586692 coding downstream 635624 70125298 ~ 70135532 (-)
LOC110520492 LOC106586689 coding downstream 722763 70035040 ~ 70048393 (-)
LOC110520490 LOC106586686 coding downstream 799983 69949665 ~ 69971173 (-)
piga LOC106586684 coding downstream 832300 69933697 ~ 69938856 (-)
jagn1a LOC106586704 coding upstream 809 70807349 ~ 70810049 (-)
LOC110520512 col8a1 coding upstream 4064 70810604 ~ 70837491 (-)
LOC118964322 NA coding upstream 89969 70896509 ~ 70907574 (-)
tmem30c LOC106586702 coding upstream 138494 70945034 ~ 70950599 (-)
cmss1 cmss1 coding upstream 144141 70950681 ~ 71009719 (-)
G292773 NA non-coding downstream 27034 70743342 ~ 70744122 (-)
G292686 NA non-coding downstream 155608 70613960 ~ 70615548 (-)
G292669 NA non-coding downstream 190062 70579424 ~ 70581094 (-)
G292420 NA non-coding downstream 196897 70573179 ~ 70574259 (-)
G292384 NA non-coding downstream 206501 70555501 ~ 70564655 (-)
G292869 NA non-coding upstream 142857 70949397 ~ 70949788 (-)
G292927 NA non-coding upstream 234620 71041160 ~ 71041699 (-)
G292931 NA non-coding upstream 237100 71043640 ~ 71043881 (-)
G293042 NA non-coding upstream 356198 71162738 ~ 71172116 (-)
G293046 NA non-coding upstream 361717 71168257 ~ 71172419 (-)
G292753 NA other downstream 50565 70720036 ~ 70720591 (-)
G291977 NA other downstream 663206 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 774551 69980346 ~ 69996605 (-)
G291138 NA other downstream 1514612 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 1920302 68846611 ~ 68850854 (-)
G292919 NA other upstream 221079 71027619 ~ 71040152 (-)
G293984 NA other upstream 1096774 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 1366509 72121974 ~ 72206818 (-)
G294451 NA other upstream 1764709 72571249 ~ 72575432 (-)
G294697 NA other upstream 1968867 72775407 ~ 72776607 (-)

Expression


Co-expression Network