jagn1a (LOC106586704)


Basic Information

Item Value
gene id jagn1a
gene name LOC106586704
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70807349 ~ 70810049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597888.2
CACGAAGGATGTTGAGAGAAAATGGGATGCTGCGACTGATGTGATGCGCGTGCGCAGTGCGCACAACGCATGTGTCTTGTCCTCTATTCAGCCGGCTTCTATCTATTCATCCAGCTTCTATTCATCTTGGCATTTAGGCATATGTAGGTACTGTAGTAGCTCGCTAACTACGTTCATTCAGCATCTCAGTAACAAACGGTTGTTACCATGACGTCTCGTGTGGGCCCTCGAGCTGCAGGTACTGATGGGAGTGACTTCAAACACAGAGAGAAGGTGGCCTCACACTACCAGATGAGCGCCTCGCTAAAGTCTGAGATCCGGAAACTCAACTTTGTCCACCTGCTGCTCTGGCTCCTGGTGGCGGCCCAGGtgatcgtcagcaaacttgaccTGGTGCCAAGCGATAAAGTGGCTGAGCCCTACAGATGGGAGTACCCCTACCTGATCAGTCTCTTTCCACTGGTCACCGGCAGCCTGTCACTGCCCAAGAACAACATCAGCTACCTGGTGATCTCCATGATCAGCTCAGGCCTGTTCTCCATCGCTCCACTCTTCTACGGCTCCATGGAGATGCTCGGCGAGGCCCAGCAGCTGTACCGCCACGGCAAGGCTTACCGCTTCATCTTTGGCTGGGCGGCGGTCACCGTCATGTACCTGGTGATGGTGGTGGCGGTGCAGGTGCACGCCTGGCAGATCTACTACAGCAAGAAGCTGCTGGACGCCTGGTTCGACTCCAcacaggagaagaagaagaagtgatgAGGATGTTTTGTGGGTTTTGAGGCTAGGGGAAAACTGtttgtgtttttctctctgtctttaggATGCATATATTAGTAtattctgttatttatttattacctCATGCAATCACTGGCTATTATGTCTTTCCAGATGGTCTATCCAACACACATTTTCTCGCCAAAACacgcatactctctctctccatttcaaaGACACTCAGGTGTATACATTTTCTCTCACATACACAAACAattagtggcgcagcggtctaaggcactgcacctcagtgctagaggtgtcactacagacccagcatcgttagggtttggctggggtaggccgtcattgtaaataagaatttgttcttaaccgacttgcctagttaaataaaataaatgaaaataaaagcAATTCTCTACTTTGTTTATCTGGCCTCAGAGAATAAACGATAGAGACTGCAGCTCCTTCTGAGACCACAATATTTACAGCTGTTGTGAAGCATTTAGACGTATGAACCAAGCCCTTGTGTGAGACTGCAGCATGACGGAGGATCTCTACTGACTCTTTGTCTTAACAGTGGAGGAATGAGGGCTGGACAAGTTTGTTGTCACGGTTTCAGTAAATTGACATCCGCCGACTAGTCTGTCAATATTGAAAGCCCTGTAAGGCATGCGCTCAAGTACTGTGTAAAGCTTGAGACTGAGAGACATGGGATGTTGTGTTTCAAaggcaaaaaaaatgtatgcatcaTTGCGCTAAAGTTGGCCTGACAGGTTAGTCTGTGTCTTGACAGCTATCAAGGGGTCTTGATTTGCCCCTGTAATGTGCCCAAACTGTAGTGCTCATCAGGGTTTTTGTCAATACCAGACAATTCATATAGTAAACCAAATATAATTTCCAAATTATCATTGAtaagcattgaagagaattggaatttcagtgtacttcctgaattgactggatttgaaatggaattgaccccaaccctggtgctCATCATTCATATATCTCTTAAATGTTCTGTATGCTTGACCCTTTGCTCCCTCACTTTTTATGATTATGTTTTTACCACCAATAAAAAGGGAAATTAAATCCTTGTTGTCTTGA

Function

NR:

description
protein jagunal homolog 1-A-like

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597888.2 True 1851 mRNA 0.46 3 70807349 70810049

Neighbor

gene id symbol gene type direction distance location
LOC110520510 tfg coding downstream 809 70771156 ~ 70806540 (-)
LOC118964359 NA coding downstream 586885 70220330 ~ 70220464 (-)
LOC110520496 LOC106586692 coding downstream 671817 70125298 ~ 70135532 (-)
LOC110520492 LOC106586689 coding downstream 758956 70035040 ~ 70048393 (-)
LOC110520490 LOC106586686 coding downstream 836176 69949665 ~ 69971173 (-)
LOC110520512 col8a1 coding upstream 555 70810604 ~ 70837491 (-)
LOC118964322 NA coding upstream 86460 70896509 ~ 70907574 (-)
tmem30c LOC106586702 coding upstream 134985 70945034 ~ 70950599 (-)
cmss1 cmss1 coding upstream 140632 70950681 ~ 71009719 (-)
LOC118964323 NA coding upstream 862410 71672459 ~ 71676171 (-)
G292773 NA non-coding downstream 63227 70743342 ~ 70744122 (-)
G292686 NA non-coding downstream 191801 70613960 ~ 70615548 (-)
G292669 NA non-coding downstream 226255 70579424 ~ 70581094 (-)
G292420 NA non-coding downstream 233090 70573179 ~ 70574259 (-)
G292384 NA non-coding downstream 242694 70555501 ~ 70564655 (-)
G292869 NA non-coding upstream 139348 70949397 ~ 70949788 (-)
G292927 NA non-coding upstream 231111 71041160 ~ 71041699 (-)
G292931 NA non-coding upstream 233591 71043640 ~ 71043881 (-)
G293042 NA non-coding upstream 352689 71162738 ~ 71172116 (-)
G293046 NA non-coding upstream 358208 71168257 ~ 71172419 (-)
G292753 NA other downstream 86758 70720036 ~ 70720591 (-)
G291977 NA other downstream 699399 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 810744 69980346 ~ 69996605 (-)
G291138 NA other downstream 1550805 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 1956495 68846611 ~ 68850854 (-)
G292919 NA other upstream 217570 71027619 ~ 71040152 (-)
G293984 NA other upstream 1093265 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 1363000 72121974 ~ 72206818 (-)
G294451 NA other upstream 1761200 72571249 ~ 72575432 (-)
G294697 NA other upstream 1965358 72775407 ~ 72776607 (-)

Expression


Co-expression Network