LOC110520512 (col8a1)


Basic Information

Item Value
gene id LOC110520512
gene name col8a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70810604 ~ 70837491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597890.2
CTCCCAGTAGTAGATATAAGACAGGTCCATGCCGTGATGCTGTTCGGAGCTCATAACCCAGGGTTGTCTCAGTacatccatctgtctgtctctccatctgtctgacTGCAGTGATTATTCCCCCTTTAAACGGCCACTCACAGAGAAAGGCCATGGTTGTACCTCCCTTCTccgcccccctccctctcctagtggcTCTGCTTCAGCTTGCAGTACTACCTCTTGTCCACGCGGGGGCGTACTACAGACACAAGCAGCACCCGCAGCAGCATCAGCCCACGCCACACCTGTCCCACATGGGCATAGGGGGTAAGGAGCAGCACCCTCAGCAGCATTGGCCAGGAAAAGAGATGCCCCACATGCAGTACCCCCAGTACAGAAAAGAGATCCCACAGATGTCCATGCACATGGGCAAGACGAACCCCCACAAGGGTGGAGTAGTCAACAGTGGACAGGATAAAGGTAAAACCATCCCCAGTGGGGCAGTGGGAGGTCTCCCTGGGGGTCTGCCAGGAGAGCAGGGCCCAGCTGGGCCTCCCGGACCTGAGGGTCCCTCTGGGCCTCCAGGACCTCCCGGGGAAGGACAGCCAGGAGGGGAAGGAAAACCAGGCCACGCTGGTCCCCCAGGATTCCCTGGAATAGGAAAACCAGGACTCCCAGGAATTCCAGGCAAGCCAGGCAGCATGGGAGAGCCAGGAGTACCTGGAGAATTGGGCCCCAGCGGCAGAGAGGGTCCGATGGGGCAGCCAGGGCCTCAGGGGTCCCCTGGTCCTTCAGGTCTTCCAGGGATAGGAAAACTAGGGGCTGGGGGGTTGCCAGGACAACCAGGATCCAGAGGAGAGCCAGGACACAAAGGCCTGCCGGGACTACCAGGATTACCAGGACCCAAGGGTGACAAGGGGATTGGACAGCCAGGACAGCCAGGCCACAAAGGACTAGCAGGACCTCCTGGACCTCCAGGACAGGGAGGGATGCCTGGTGTGGGCAAGCCTGGAATGAATGGCATGTCAGGGCCACCAGGAGGACCAGGGAAACCAGGCCTCCCTGGAGAGCAGGGGCTGGCTGGACCAGCAGGAGAGGGCGGAGAGCCCGGTCCACCAGGGCTGCCAGGTCAGGGAAAACCTGGCCAGAATGGTCTGCCGGGACAACCAGGAATGCCCGGTGGGAAAGGGCACCCAGGCCCTCCAGGTTTTCCAGGGAAGCCTGGATTGCCTGGATTCGGAAAACCAGGATTCCCAGGACCCAAAGGAGATAAGGGGATGGCTGGGATGCCTGGAGGCCCAGGACCAAAGGGAGACAAGGGCCATGGAGGACTGCCTGGTATGCTAGGACAGCCTGGATCAATTGGACCAGCTGGTCCCCTTGGCCCTATGGGACCCCCTGGAGGTCTGGGTCAACCAGGGCCAAAAGGCGAGGCTGGAGAAGGAGGTCATAAGGGGTTGCCTGGTGGGCAAGGGGAGCCTGGTCCTACTGGACTGACTGGTCAGAATGGCTTccctggagagggaggagagcctGGGCCAAGGGGTCCCACTGGGCCTGTAGGACCCCAAGGGGAAGGCGGACACAAAGGGTTACCAGGCGCCCCTGGCATTCCAGGCCTACCTGGgccaaagggagagggaggacttCCAGGCGAGAAGGGTCCCCAAGGTCCTAAGGGCATTCCAGGTCTGGGAGGTGCAGGTGGGCCGATCGGACCTCCTGGTGCTCCTGGGTCTAAAGGTGACAGCGGAACTCCTGGTCTTCCCGGCGTTGATGGTAAGGGAAACCCAGGTGTCCCTGGTCCTCTTGGACCTCCAGGTAAAGAAGGTCCTGGAGGACCACCGGGAAGCCCAGGCCAGCCAGGTCCACCTGGTCCCCCAGGGCCTCCCGGACCCACTGACATGGGAGCAGTCCTCCCTGAGATGGGTTTTCCTCCTGGGCTGGACGGAGTCAAGACTGCCGGTTATGGCAAGAAGGGAAAATATGGAGGAAACGGAGGAGAAGTGATGGGCCCCAACGGCCTGGAGATGCCCGCGTTCACGGCTCTGGTGACCACGCCCTTCCCACCTGTGGGCACGGCTGTGGTGTTTGACAAAATCCTGTACAACGGCCGTCAGAACTACAACCCCCAGACAGGCGTGTTCACCTGCGACATGCCCGGGATCTACTACTTTGCCTACCACATCAGCTGCAAAGGTGCCAACGTGTGGGTGGCGCTGATGAGGAACGATGAGCCTGTGATGTACACATATGATGAGTATAAAAAGGGCTTCCTGGATCAGGCATCGGGGAGCGCAGTGTTACCTCTACAGCCCGGGGACACTGTGTACCTCCAGCTACCCTCGGACCAGGCCGCAGGACTATACGCTGGCCAATACGTCCACTCCTCCTTCTCTGGGTACTTGTTGTACCCCATGTAAGAACACCAACCttcagagaggaagagatggtcACAAAGAGAGAGAATGTTGGAGAAATGTAAACATTGATTATAGAATTCTTTAAATTGATATGTTGTTTTAAAAACATCAATTATCTGCTGAGATTGACGCTGTTGAGATCGACAGTGACGGGAGGACATGTCGGACCATCCCAGGGAAATTCTGAGAGAGGAGTGTGCTTGTGTGAGGGTACATATATGCAGTTTTTAATAACAATTTATGTTGGGGTACAAAGATTGCTGCATCTATCTACTGGTCTGAGAAGTTGTCACAACAACACTGCATTAAAATATTCCATTACAGCAACTGGGTTCATTTATTGTAAAATGTGGTGATATATATTGGTTTGATTTATAGTACAGCACAGACTGATGTGGAGACTGTAGAAGAAAGAATGGGATATCTGAGGTAtatatttagtattgtgtttTCCCCAGCCCCTACATGTTCCTATTTAAACTGGCAGCTGCCATAAACAAAACTGTGGCAAAGAATGTAAATTGGATAACTTTAAAAAGAAAACTAAAGAAAATAAATTGAATAGCTATATTGGCACCTGAACTTTTGTATTACGGTACTTATAAAATGGCAATTGAAAACCAATAGAGACAGTTCAAGATTCACATAAAGTGGTGCTATCATTTATGTGACATTTTAGTTTGTTACAtaactttgttgttttgtttttgttttatttgtgtgattattttttgttgttactTTTGCAGACAAGCATCATCTATGATGTTTATAGGGGTGATTTTGTTGCATGAAATGGATGGGAATGTAATGCATTATGGGTGTATTGGTTCAAAGCGATGCCTCTTGTGGCACGTACAGAGTAATGCTCCAACAGACACTGACTAGCCCACAAAAATGAAAACCACTGCTCTCATTACAAAGCCCCTtcttgctgtatgtctctgttGTCAGCTGAATGAAGCAGGAGCACTATACTGACAGAGGTATGAAACAAGTTTGACCAACAGATAGACACTCATTTTGATGGCCTATACGGTTATGTAAGTAGGATAGGAATTGATAATCAATTGTGAATAACTTTTGAAAAAGAGAATTGAATTAATTAATTACTCTGGGGAAAATGGTGTGTAGGCCTATTCCCTCTGGGTTCAGCAGTACAGAATTTAAGTCATTGGGTTAAAGGTACTGTATGTGGAGGTTAAGATTGAAGGTTAATAAATACTTTGATGTCAATTAGCGAGAATAATGCCCAAAACAAACCAGGAGGAGGTGTTTGTGGTTACAAGTTAGTGAGGAGACTTATAGACAACGAATATAGACAAAGAATAGAATgtcaaaagagagagggggaagggtgaAAATGCCTTCCTGCATgccccctccctcacctctcacccACCTATATATCCCTATACCTCACCCCTCTAGTCTACCCTTCCTTTCTACCCATCTCTACTCTTCTACCCCTCCCCTGACTCCAGGTATCAATTCTGTTTTCTATCTTTATTTCACTCAATGGTGCTAAACACAGTataatctagaagaaaaagaaacgcacacctattaagacgaggtgctggctagcggagtagaaaacttgaaaataaaagagagccgcacactctaggagctcagatgcaaaaatgtaattaccaacgtttcaacAGCCAaggattataccctgatgaagacagcttggctgtcgaaacgttggtaattacatttttgcatctgagctcctagagtgtgcggctctcttttattttcaagctAAACACAGTATAACCAAACAAAACCTTGAGTTTTTATGTttttactgttatactgtagatgttgttttttaaataaagatgatttaaCTAAAA

Function

symbol description
col8a1 Predicted to be an extracellular matrix structural constituent. Involved in endodermal cell differentiation. Colocalizes with collagen-containing extracellular matrix.

NR:

description
collagen alpha-1(VIII) chain-like

GO: NA

KEGG:

id description
K23455 COL8A; collagen type VIII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597890.2 True 4273 mRNA 0.50 3 70810604 70837491

Neighbor

gene id symbol gene type direction distance location
jagn1a LOC106586704 coding downstream 555 70807349 ~ 70810049 (-)
LOC110520510 tfg coding downstream 4064 70771156 ~ 70806540 (-)
LOC118964359 NA coding downstream 590140 70220330 ~ 70220464 (-)
LOC110520496 LOC106586692 coding downstream 675072 70125298 ~ 70135532 (-)
LOC110520492 LOC106586689 coding downstream 762211 70035040 ~ 70048393 (-)
LOC118964322 NA coding upstream 59018 70896509 ~ 70907574 (-)
tmem30c LOC106586702 coding upstream 107543 70945034 ~ 70950599 (-)
cmss1 cmss1 coding upstream 113190 70950681 ~ 71009719 (-)
LOC118964323 NA coding upstream 834968 71672459 ~ 71676171 (-)
LOC110520517 LOC106586722 coding upstream 870991 71708482 ~ 71716359 (-)
G292773 NA non-coding downstream 66482 70743342 ~ 70744122 (-)
G292686 NA non-coding downstream 195056 70613960 ~ 70615548 (-)
G292669 NA non-coding downstream 229510 70579424 ~ 70581094 (-)
G292420 NA non-coding downstream 236345 70573179 ~ 70574259 (-)
G292384 NA non-coding downstream 245949 70555501 ~ 70564655 (-)
G292869 NA non-coding upstream 111906 70949397 ~ 70949788 (-)
G292927 NA non-coding upstream 203669 71041160 ~ 71041699 (-)
G292931 NA non-coding upstream 206149 71043640 ~ 71043881 (-)
G293042 NA non-coding upstream 325247 71162738 ~ 71172116 (-)
G293046 NA non-coding upstream 330766 71168257 ~ 71172419 (-)
G292753 NA other downstream 90013 70720036 ~ 70720591 (-)
G291977 NA other downstream 702654 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 813999 69980346 ~ 69996605 (-)
G291138 NA other downstream 1554060 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 1959750 68846611 ~ 68850854 (-)
G292919 NA other upstream 190128 71027619 ~ 71040152 (-)
G293984 NA other upstream 1065823 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 1335558 72121974 ~ 72206818 (-)
G294451 NA other upstream 1733758 72571249 ~ 72575432 (-)
G294697 NA other upstream 1937916 72775407 ~ 72776607 (-)

Expression


Co-expression Network