LOC118964322


Basic Information

Item Value
gene id LOC118964322
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70896509 ~ 70907574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051368.1
acccagactaccgtttgcaactccacatggggacaaatgGGGTTTGCACCTGGAGTCACCTGGAGACTTGAGGTAATTGTACTGAGAGCATGTGTTTGGTGAAAAAAACCCAGACTACCGTTTGCAACTCCACATGGGGACATGGGGTTTGCACCTGGAGTCACCTGGAGACTTGAGGACTGAGAGGTATTGGAGGTAGGCGGAGACTTCTCACAGCTGAGCAGGAGACTGCCCTGGAGAATATGGTGATTGCCAATAATGCCATCTGTTTGAGGGAAATTCAAACCCAAATAGTTGAAAACCTGGTAGTCTTCCAAGGAATTGACAGCATCAGCATTTCCACCATTGACCGGATCGTTCAGAAGAACCAAATAAGGACAAAGCAGCTGTACTGTGTGCCTTTTGAAAGGAATTCAAACAGAGTTAAGGAGCAACGATTCCAGTACGTGCAGGGGCGTGTGAGCAGTCCTGGGAAAAGTGGAGACGGATCAGGCAAGCAAGGTGCTGAAACGAAAGCTAGCCATATGATAATGATGACTAGCTATCTTAGATAGCTGGCTATGGATTTCCAGTACCAGGCTGGAGAGTGGTGGTGGCCACTGGAGGGCAAGCAATGTTACTGAGCACACCTAGAAGCTCATCGGCATGAAGTTCATCTATACCAGCTGATACAAGTAGCCTAGCTAGCACAGAATGTTCCTGTAACGTTCCTTAAAGGTTCTTAGAAAATAACTTTCAGCAGTGGAAATGGTTATGAGggaacattttgttacgttaaagccttattctaaaatgtattgaatcattccacccccccccccccccccctcaatctacccacaataccccataatgacaaagcaaaaacagttttgttgaaatttgtttaaaaaatgtttttaaatggttacaaatattattttatgTGGGAAGGGCACGACATCTCATGATGATGGCTGCTGGGGAAAAAGGCCATGTGAGGATCCATGTCTGATTCAGCACACAGTCAATACCACACAAGCACTCGTGATCTTAATAGTACTCACCTGCCCACTAGCCTGCCAGGCACTCACTCTCTGACACCACTGTAGGAACAGAAAATGACGTTAGTATTCAATAGGAGCACTGAGACAAGCAGCCTGCTGACTGGAGGGAATTGGAGTCCACCGAGTTCCATCGACTTGTCTGGCCAAGAACCAGTCTGCTAACactgctagctagtagctaccccCCTTTCTTTCCCTAAGCACATTGAAAGGGAACACTAGACCTAGTAGGAAACATTCTCCCCAACCCATTTTGAACTCTGTTTCAACAATCATCAGCTGATTCAGAAAATAATTTCCCCTTTGACAGTAAAGTGAGCAGCTGATAACTCTTCAACTCACgtgcttttaaaatgtatttatgtgtCATACGTTGTCACGGCTCCTCCTCTGCATTGCAGGGGCATttcctcctgcaggcagaggagggtcgttagtgattggagtcacctgggATCAGAGTATTTAAACTGTCACTAATCacctctctctccgctcctccaggtatgaacctgttttgtttgttcctttgtagttttgcatagttttcactcagtcattcacAGATTCATGTATCCATGCACTTTACATACACCCTACATTATGATACTTTCACACCTCATTCCTTTTTCTTAGTTTAAAGTTAATAGTTTTGTTTACaataaagatttttttaaattggccta

Function

NR:

description
PREDICTED: uncharacterized protein LOC109202777

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051368.1 True 1732 mRNA 0.44 4 70896509 70907574

Neighbor

gene id symbol gene type direction distance location
LOC110520512 col8a1 coding downstream 59018 70810604 ~ 70837491 (-)
jagn1a LOC106586704 coding downstream 86460 70807349 ~ 70810049 (-)
LOC110520510 tfg coding downstream 89969 70771156 ~ 70806540 (-)
LOC118964359 NA coding downstream 676045 70220330 ~ 70220464 (-)
LOC110520496 LOC106586692 coding downstream 760977 70125298 ~ 70135532 (-)
tmem30c LOC106586702 coding upstream 37460 70945034 ~ 70950599 (-)
cmss1 cmss1 coding upstream 43107 70950681 ~ 71009719 (-)
LOC118964323 NA coding upstream 764885 71672459 ~ 71676171 (-)
LOC110520517 LOC106586722 coding upstream 800908 71708482 ~ 71716359 (-)
LOC110504652 LOC106586714 coding upstream 846705 71754279 ~ 71764744 (-)
G292773 NA non-coding downstream 152387 70743342 ~ 70744122 (-)
G292686 NA non-coding downstream 280961 70613960 ~ 70615548 (-)
G292669 NA non-coding downstream 315415 70579424 ~ 70581094 (-)
G292420 NA non-coding downstream 322250 70573179 ~ 70574259 (-)
G292384 NA non-coding downstream 331854 70555501 ~ 70564655 (-)
G292869 NA non-coding upstream 41823 70949397 ~ 70949788 (-)
G292927 NA non-coding upstream 133586 71041160 ~ 71041699 (-)
G292931 NA non-coding upstream 136066 71043640 ~ 71043881 (-)
G293042 NA non-coding upstream 255164 71162738 ~ 71172116 (-)
G293046 NA non-coding upstream 260683 71168257 ~ 71172419 (-)
G292753 NA other downstream 175918 70720036 ~ 70720591 (-)
G291977 NA other downstream 788559 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 899904 69980346 ~ 69996605 (-)
G291138 NA other downstream 1639965 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 2045655 68846611 ~ 68850854 (-)
G292919 NA other upstream 120045 71027619 ~ 71040152 (-)
G293984 NA other upstream 995740 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 1265475 72121974 ~ 72206818 (-)
G294451 NA other upstream 1663675 72571249 ~ 72575432 (-)
G294697 NA other upstream 1867833 72775407 ~ 72776607 (-)

Expression


Co-expression Network