cmss1 (cmss1)


Basic Information

Item Value
gene id cmss1
gene name cmss1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70950681 ~ 71009719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597894.2
TACAACTTAACAGATGCCACTTTCGTGACTGTTTCTTTGCAGGGGCTTTGTCAGTGTAGACTCAACCTAATGTAGTAAGTGTAGAGTTGATGTCTTGTCCATAATGTCCCGGTAACACTTCCGTTTAAACTGTTCACAAATGTCATGCGATTGTGAACAACCAGAAGCCACAGCGCAGCGGTAGTTTTGGATTTGAAGATGGGGGACGATTTAGGTGATGACTGGTGGGAACAAAAGGGTAATTCTGATTCCCCCGtgggagaggagagtgaagaaCCAGAGAAACAGCCCACAGAGCAAGCATCCCCACGGGAGAAGAaaggaaagaagaggaagagtgTAATGGAAAACCCAGTCCCGGTCAAGAAGAAGACTGCACTGAAATCACAGACTGAGTGTTTTATGGCTCAGGAGAAGAAAGAGGATGAAGGAGAAAAAAAGCCCAAGAAAAAGAGAAAGaagaagaagaagacgatcACAGACGTCCTCGCCACCTCGGACCCCAAACCGGGCTCTCCAGTTGACCTGCAGAGCCTGGTTCTAGAACACTTCAAAGACAAACGCTCCGTCATCGAGCTGGAGGAGCTCAAACTACAGGAGTCCTGCTTCGTGAGGAGTAATGACCTCACACACAGCCTCTCCTCCTACCTGAAAGAAATTTGTCCCAAATGGGCTAAGGTCCAGAAGCAGCACACAGAGAAGAGTTCTGTGGTTCTGCTCATCGTCTGTAGCGCCGCACTAAGAGTCATCGAGCTCATCAAACAGTTAACCACCTTCAAGGGAGAGGCCAAAGTGCTGAAGCTGTTTGCAAAGCACATCAAGGTAGAGGAGCAGGTGAAGCTCCTACAGACGGGGGTGACACACATTGGGGTGGGGACGCCAGGGAGACTGAGCGCCCTCATTGAGAAAGAGGGTCTGACCCTGCCTCCCCTGCGTTTCCTGGTTCTGGACTGGAACTGGAGAGACCAGAAGCTTCGCAGGATGGTGGATGTTCCTGAGGTCAAAGGTGACTTGTTGAAGCTGCTGGATATGGGAATCTTGAAAGGATGTAGGGAAGGAAAAGTGAAAGTGGGACTGTTCTGATACAACCACACACCTAGTGCCATAATCtgccattttattttatttgtttcacctttatttaaccaggtaggccagttgagaacaagatctcatttacaactgcgacctggccaagataaagcaaagcagtgcgacaaaaaacaacacatggacacaagttacacatggaataaaataAAGTATAGTCAATAACAATtgaaacatctatatacagtgtgtgcaaatggagtaaggaggtaaggcaataaataggccatagtagcaaagtaattcaaatttagcaaattaacactggagtgagagatgtgcagatgatgatgtgcaaataataatactggtgtgcaaaaagagcaaataaaaacaatatgaggatgaagtaggtagattggatgggctatttacagatgggctgtgtacagctgcagcaatcggtgaGCTGCTCAGATTGCTGATGCCATATACtgagatacaaacacacacctagtGCCATACTCTGCTATATActgacatacaaacacacacccaacCAAGTCAGACTGGACCTCTTCTCATCATGCTCTTGTTCACACGCgtgcacaaacactcacacgcaACAAAGTTTATTAGGGCCCCTCAAACCAATCCTGTCTCCATAACAGACCGACTGCTGGACATTTCAACCATCTACCCTATCCTGTTTTTACCCTCTCCCTCTGTGACACTGTGTTCTTGTTCTATTTTAAGTGACATGTAAAATATCTGAAATGGTTTATACAGTGTTGTAGTTCAACAATAACACAGCTCTCTGTGTGACACAGCCCAACTGTGTGATGGTTTGAATAAAGACATTTGAATGGAA
>XM_036975071.1
CCCTTCTTGAAACATTTACAACTTAACAGATGCCACTTTCGTGACTGTTTCTTTGCAGGGGCTTTGTCAGTGTAGACTCAACCTAATGTAGTAAGTGTAGAGTTGATGTCTTGTCCATAATGTCCCGGTAACACTTCCGTTTAAACTGTTCACAAATGTCATGCGATTGTGAACAACCAGAAGCCACAGCGCAGCGGTAGTTTTGGATTTGAAGATGGGGGACGATTTAGGTGATGACTGGTGGGAACAAAAGGGTAATTCTGggggggtctccagTCCCAATTAAGGGTGAAATATGTCCCCTGTGTCATGCCGTCATCACACAAGCATTTCCAAAACCGCCTGAAGGCCCCCAGTTCTCTGGAAATGTCACTATTTATAGAAGGGACTGTTGATTCCCCCGtgggagaggagagtgaagaaCCAGAGAAACAGCCCACAGAGCAAGCATCCCCACGGGAGAAGAaaggaaagaagaggaagagtgTAATGGAAAACCCAGTCCCGGTCAAGAAGAAGACTGCACTGAAATCACAGACTGAGTGTTTTATGGCTCAGGAGAAGAAAGAGGATGAAGGAGAAAAAAAGCCCAAGAAAAAGAGAAAGaagaagaagaagacgatcACAGACGTCCTCGCCACCTCGGACCCCAAACCGGGCTCTCCAGTTGACCTGCAGAGCCTGGTTCTAGAACACTTCAAAGACAAACGCTCCGTCATCGAGCTGGAGGAGCTCAAACTACAGGAGTCCTGCTTCGTGAGGAGTAATGACCTCACACACAGCCTCTCCTCCTACCTGAAAGAAATTTGTCCCAAATGGGCTAAGGTCCAGAAGCAGCACACAGAGAAGAGTTCTGTGGTTCTGCTCATCGTCTGTAGCGCCGCACTAAGAGTCATCGAGCTCATCAAACAGTTAACCACCTTCAAGGGAGAGGCCAAAGTGCTGAAGCTGTTTGCAAAGCACATCAAGGTAGAGGAGCAGGTGAAGCTCCTACAGACGGGGGTGACACACATTGGGGTGGGGACGCCAGGGAGACTGAGCGCCCTCATTGAGAAAGAGGGTCTGACCCTGCCTCCCCTGCGTTTCCTGGTTCTGGACTGGAACTGGAGAGACCAGAAGCTTCGCAGGATGGTGGATGTTCCTGAGGTCAAAGGTGACTTGTTGAAGCTGCTGGATATGGGAATCTTGAAAGGATGTAGGGAAGGAAAAGTGAAAGTGGGACTGTTCTGATACAACCACACACCTAGTGCCATAATCtgccattttattttatttgtttcacctttatttaaccaggtaggccagttgagaacaagatctcatttacaactgcgacctggccaagataaagcaaagcagtgcgacaaaaaacaacacatggacacaagttacacatggaataaaataAAGTATAGTCAATAACAATtgaaacatctatatacagtgtgtgcaaatggagtaaggaggtaaggcaataaataggccatagtagcaaagtaattcaaatttagcaaattaacactggagtgagagatgtgcagatgatgatgtgcaaataataatactggtgtgcaaaaagagcaaataaaaacaatatgaggatgaagtaggtagattggatgggctatttacagatgggctgtgtacagctgcagcaatcggtgaGCTGCTCAGATTGCTGATGCCATATACtgagatacaaacacacacctagtGCCATACTCTGCTATATActgacatacaaacacacacccaacCAAGTCAGACTGGACCTCTTCTCATCATGCTCTTGTTCACACGCgtgcacaaacactcacacgcaACAAAGTTTATTAGGGCCCCTCAAACCAATCCTGTCTCCATAACAGACCGACTGCTGGACATTTCAACCATCTACCCTATCCTGTTTTTACCCTCTCCCTCTGTGACACTGTGTTCTTGTTCTATTTTAAGTGACATGTAAAATATCTGAAATGGTTTATACAGTGTTGTAGTTCAACAATAACACAGCTCTCTGTGTGACACAGCCCAACTGTGTGATGGTTTGAATAAAGACATTTGAATGGAA

Function

symbol description
cmss1 Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog).

NR:

description
PREDICTED: protein CMSS1 isoform X1

GO: NA

KEGG:

id description
K14784 CMS1; protein CMS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597894.2 False 1921 mRNA 0.45 10 70950681 71009703
XM_036975071.1 True 2068 mRNA 0.45 11 70950681 71009719

Neighbor

gene id symbol gene type direction distance location
tmem30c LOC106586702 coding downstream 82 70945034 ~ 70950599 (-)
LOC118964322 NA coding downstream 43107 70896509 ~ 70907574 (-)
LOC110520512 col8a1 coding downstream 113190 70810604 ~ 70837491 (-)
jagn1a LOC106586704 coding downstream 140632 70807349 ~ 70810049 (-)
LOC110520510 tfg coding downstream 144141 70771156 ~ 70806540 (-)
LOC118964323 NA coding upstream 662740 71672459 ~ 71676171 (-)
LOC110520517 LOC106586722 coding upstream 698763 71708482 ~ 71716359 (-)
LOC110504652 LOC106586714 coding upstream 744560 71754279 ~ 71764744 (-)
rnaseh2b rnaseh2b coding upstream 764311 71774030 ~ 71785013 (-)
trim13 LOC106586719 coding upstream 922702 71932421 ~ 71937033 (-)
G292869 NA non-coding downstream 893 70949397 ~ 70949788 (-)
G292773 NA non-coding downstream 206559 70743342 ~ 70744122 (-)
G292686 NA non-coding downstream 335133 70613960 ~ 70615548 (-)
G292669 NA non-coding downstream 369587 70579424 ~ 70581094 (-)
G292420 NA non-coding downstream 376422 70573179 ~ 70574259 (-)
G292927 NA non-coding upstream 31441 71041160 ~ 71041699 (-)
G292931 NA non-coding upstream 33921 71043640 ~ 71043881 (-)
G293042 NA non-coding upstream 153019 71162738 ~ 71172116 (-)
G293046 NA non-coding upstream 158538 71168257 ~ 71172419 (-)
G293043 NA non-coding upstream 160967 71170686 ~ 71174999 (-)
G292753 NA other downstream 230090 70720036 ~ 70720591 (-)
G291977 NA other downstream 842731 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 954076 69980346 ~ 69996605 (-)
G291138 NA other downstream 1694137 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 2099827 68846611 ~ 68850854 (-)
G292919 NA other upstream 17900 71027619 ~ 71040152 (-)
G293984 NA other upstream 893595 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 1163330 72121974 ~ 72206818 (-)
G294451 NA other upstream 1561530 72571249 ~ 72575432 (-)
G294697 NA other upstream 1765688 72775407 ~ 72776607 (-)

Expression


Co-expression Network