rnaseh2b (rnaseh2b)


Basic Information

Item Value
gene id rnaseh2b
gene name rnaseh2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71774030 ~ 71785013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975077.1
GACACGGAAGTACCTTTTTTGTGCTGCTGACGAGACGCTGATTTGTTGCACTGACAACaaccagctagctaactatcttcttgaaaaaaaatacacttttaaattgttgcgtgccattttaactagctagctagccgagATCAAAATGACCACTAAAAAGAAGCGGACACCACATTCACCAAACGACAGATGGGTTGTTGTTGCAGCAGATGCAGCTTCTTTGTACCTGTTGGGCAGTGGTGATGTGCAGCTGTATGAGGTCAAAGCCTTCAACGAGGACTTCCACTCCTGGTTCATTGGCCAGACAGTACAGCGAGATGGGAGACTTCTGTATGTCACTCCAATGGATCCCCTCTACCTACTGTTGCCCTACTTGATCAAAGCTGGTGAAGAGGGGAAGTTCCAGCCCGTGGACCAGGTAGTGATGGACGAGGACTTCCCAGCATGCACCAGGCTGCTGAGCTGCATACGCTCCCAGGCCTCCCTGCACCATGTGGCTGAGGagaaagAGGTGGGCAGTCAGAAGTTTCAGCgctacagccaggagaggaccaTGGAATGGTTAAAGAAAAAGGCTGAGAGGACAGTGAAGACCCTCAGAAAGAGTAACATCTCAGTGGGAGAGGGAGTAAAGTCCACAACGTATGTCCGAGTCAAGCAGGAGTCAGAGACCCAGGAAGAGGACTACCTGCGGTATGCCCATGGCCTGATATCTGAGTACATCAGTGAAGACCTGAGCAAAGCCCTCCTCAAGCATCTCCAGTTACCTGAGCTCTCAAGTCCTAAGGAGGTGGAGCCTCCCTCAAAGAAGCGGAAACTGACTGACAAACCATTGGAGGCAGGAGAGGACTACACCAAATTCAACCGCTCCGATTTCTCCCGCAAACCGCCCAAGAAGATGAGTGCTGCACAGAAGACCCTGGCCAAGGTGGACAAAACAGGCATGAAGAGCATGTCTGCCTTCTTCAGCCCCAAGGGCAAGGCAGAGAAAAAATGAATGTTAGAATGATGCAGCAGTTTGTGTCTGTcggtgtgcgtgtctgtctgtcggtcggtgtgtgtgtctacagtgtgtgtttctgtcggtctctgtgtgtgtcggtcggtcagtgtgggtgtctagtgtgtgtgtgtgtctgccggtGTGcgtgtctacagtgtgtgtgtctgtcggtctctgtgtgtgtgtcggtcggtcggtttctagcgtgtgtgtgtctgtcagtgtgtgtcggtgtgcgtgtctatagtgtgtgtctgtcagtgtgtgccggtcggtgtgtgtgtcggtgtagTGTTTATGTCTGTCGGTGTGCGTgtctactctgtgtgtgtgtgtcggttggtcggtgtgtgtgtagtgtgtctacagtgtgtgtgtgtgtctacagtgtgtgtgcacgcacacaTGTGCTTTTGGTAATAAAGAAAATAACTATT
>XM_021597898.2
TTTTCCAAATTCCGTGACACGGAAGTACCTTTTTTGTGCTGCTGACGAGACGCTGATTTGTTGCACTGACAACaaccagctagctaactatcttcttgaaaaaaaatacacttttaaattgttgcgtgccattttaactagctagctagccgagATCAAAATGACCACTAAAAAGAAGCGGACACCACATTCACCAAACGACAGATGGGTTGTTGTTGCAGCAGACTCTGCAGTGGAAACACCAAAGAAAGATGACAGTGACCCCACTTTCATCCGGCTTAGGAACCCTTCAACAGATGCAGCTTCTTTGTACCTGTTGGGCAGTGGTGATGTGCAGCTGTATGAGGTCAAAGCCTTCAACGAGGACTTCCACTCCTGGTTCATTGGCCAGACAGTACAGCGAGATGGGAGACTTCTGTATGTCACTCCAATGGATCCCCTCTACCTACTGTTGCCCTACTTGATCAAAGCTGGTGAAGAGGGGAAGTTCCAGCCCGTGGACCAGGTAGTGATGGACGAGGACTTCCCAGCATGCACCAGGCTGCTGAGCTGCATACGCTCCCAGGCCTCCCTGCACCATGTGGCTGAGGagaaagAGGTGGGCAGTCAGAAGTTTCAGCgctacagccaggagaggaccaTGGAATGGTTAAAGAAAAAGGCTGAGAGGACAGTGAAGACCCTCAGAAAGAGTAACATCTCAGTGGGAGAGGGAGTAAAGTCCACAACGTATGTCCGAGTCAAGCAGGAGTCAGAGACCCAGGAAGAGGACTACCTGCGGTATGCCCATGGCCTGATATCTGAGTACATCAGTGAAGACCTGAGCAAAGCCCTCCTCAAGCATCTCCAGTTACCTGAGCTCTCAAGTCCTAAGGAGGTGGAGCCTCCCTCAAAGAAGCGGAAACTGACTGACAAACCATTGGAGGCAGGAGAGGACTACACCAAATTCAACCGCTCCGATTTCTCCCGCAAACCGCCCAAGAAGATGAGTGCTGCACAGAAGACCCTGGCCAAGGTGGACAAAACAGGCATGAAGAGCATGTCTGCCTTCTTCAGCCCCAAGGGCAAGGCAGAGAAAAAATGAATGTTAGAATGATGCAGCAGTTTGTGTCTGTcggtgtgcgtgtctgtctgtcggtcggtgtgtgtgtctacagtgtgtgtttctgtcggtctctgtgtgtgtcggtcggtcagtgtgggtgtctagtgtgtgtgtgtgtctgccggtGTGcgtgtctacagtgtgtgtgtctgtcggtctctgtgtgtgtgtcggtcggtcggtttctagcgtgtgtgtgtctgtcagtgtgtgtcggtgtgcgtgtctatagtgtgtgtctgtcagtgtgtgccggtcggtgtgtgtgtcggtgtagTGTTTATGTCTGTCGGTGTGCGTgtctactctgtgtgtgtgtgtcggttggtcggtgtgtgtgtagtgtgtctacagtgtgtgtgtgtgtctacagtgtgtgtgcacgcacacaTGTGCTTTTGGTAATAAAGAAAATAACTATT
>XM_021597899.2
ATTTTCCAAATTCCGTGACACGGAAGTACCTTTTTTGTGCTGCTGACGAGACGCTGATTTGTTGCACTGACAACaaccagctagctaactatcttcttgaaaaaaaatacacttttaaattgttgcgtgccattttaactagctagctagccgagATCAAAATGACCACTAAAAAGAAGCGGACACCACATTCACCAAACGACAGATGGGTTGTTGTTGCAGCAGACTCTGCAGTGGAAACACCAAAGAAAGATGACAGTGACCCCACTTTCATCCGGCTTAGGAACCCTTCAACAGATGCAGCTTCTTTGTACCTGTTGGGCAGTGGTGATGTGCAGCTGTATGAGGTCAAAGCCTTCAACGAGGACTTCCACTCCTGGTTCATTGGCCAGACAGTACAGCGAGATGGGAGACTTCTGTATGTCACTCCAATGGATCCCCTCTACCTACTGTTGCCCTACTTGATCAAAGCTGGTGAAGAGGGGAAGTTCCAGCCCGTGGACCAGGTAGTGATGGACGAGGACTTCCCAGCATGCACCAGGCTGCTGAGCTGCATACGCTCCCAGGCCTCCCTGCACCATGTGGCTGAGGagaaagAGGTGGGCAGTCAGAAGTTTCAGCgctacagccaggagaggaccaTGGAATGGTTAAAGAAAAAGGCTGAGAGGACAGTGAAGACCCTCAGAAAGAGTAACATCTCAGTGGGAGAGGGAGTAAAGTCCACAACGTATGTCCGAGTCAAGCAGGAGTCAGAGACCCAGGAAGAGGACTACCTGCGGTATGCCCATGGCCTGATATCTGAGTACATCAGTGAAGACCTGAGCAAAGCCCTCCTCAAGCATCTCCAGTTACCTGAGCTCTCAAGTCCTAAGGAGGTGGAGCCTCCCTCAAAGCCGCCCAAGAAGATGAGTGCTGCACAGAAGACCCTGGCCAAGGTGGACAAAACAGGCATGAAGAGCATGTCTGCCTTCTTCAGCCCCAAGGGCAAGGCAGAGAAAAAATGAATGTTAGAATGATGCAGCAGTTTGTGTCTGTcggtgtgcgtgtctgtctgtcggtcggtgtgtgtgtctacagtgtgtgtttctgtcggtctctgtgtgtgtcggtcggtcagtgtgggtgtctagtgtgtgtgtgtgtctgccggtGTGcgtgtctacagtgtgtgtgtctgtcggtctctgtgtgtgtgtcggtcggtcggtttctagcgtgtgtgtgtctgtcagtgtgtgtcggtgtgcgtgtctatagtgtgtgtctgtcagtgtgtgccggtcggtgtgtgtgtcggtgtagTGTTTATGTCTGTCGGTGTGCGTgtctactctgtgtgtgtgtgtcggttggtcggtgtgtgtgtagtgtgtctacagtgtgtgtgtgtgtctacagtgtgtgtgcacgcacacaTGTGCTTTTGGTAATAAAGAAAATAACTATT

Function

symbol description
rnaseh2b Predicted to be involved in RNA catabolic process and ribonucleotide metabolic process. Predicted to be located in nucleus. Predicted to be part of ribonuclease H2 complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and ventral mesenchyme. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2B (ribonuclease H2 subunit B).

NR:

description
ribonuclease H2 subunit B isoform X2

GO: NA

KEGG:

id description
K10744 RNASEH2B; ribonuclease H2 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975077.1 False 1440 mRNA 0.51 10 71774030 71784997
XM_021597898.2 False 1527 mRNA 0.51 11 71774030 71785012
XM_021597899.2 True 1450 mRNA 0.51 10 71774030 71785013

Neighbor

gene id symbol gene type direction distance location
LOC110504652 LOC106586714 coding downstream 9286 71754279 ~ 71764744 (-)
LOC110520517 LOC106586722 coding downstream 57671 71708482 ~ 71716359 (-)
LOC118964323 NA coding downstream 97859 71672459 ~ 71676171 (-)
cmss1 cmss1 coding downstream 764311 70950681 ~ 71009719 (-)
tmem30c LOC106586702 coding downstream 823431 70945034 ~ 70950599 (-)
trim13 LOC106586719 coding upstream 147408 71932421 ~ 71937033 (-)
LOC110505427 LOC106586716 coding upstream 192800 71977813 ~ 71979314 (-)
LOC110520524 NA coding upstream 201307 71986320 ~ 71996884 (-)
LOC110520527 LOC106586729 coding upstream 212341 71997354 ~ 72005789 (-)
LOC110520523 LOC106582019 coding upstream 225682 72010695 ~ 72114513 (-)
G293739 NA non-coding downstream 21707 71751912 ~ 71752323 (-)
G293738 NA non-coding downstream 22236 71751390 ~ 71751794 (-)
G293731 NA non-coding downstream 33991 71739534 ~ 71740039 (-)
G293729 NA non-coding downstream 35444 71738279 ~ 71738586 (-)
G293725 NA non-coding downstream 42234 71731579 ~ 71731796 (-)
G293747 NA non-coding upstream 437 71785450 ~ 71785848 (-)
G293755 NA non-coding upstream 16956 71801969 ~ 71802295 (-)
G293818 NA non-coding upstream 72250 71857263 ~ 71857466 (-)
G293822 NA non-coding upstream 76458 71861471 ~ 71865225 (-)
G293828 NA non-coding upstream 115403 71900416 ~ 71900646 (-)
G292919 NA other downstream 733878 71027619 ~ 71040152 (-)
G292753 NA other downstream 1053439 70720036 ~ 70720591 (-)
G291977 NA other downstream 1666080 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 1777425 69980346 ~ 69996605 (-)
G291138 NA other downstream 2517486 69256005 ~ 69256544 (-)
G293984 NA other upstream 118301 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 388036 72121974 ~ 72206818 (-)
G294451 NA other upstream 786236 72571249 ~ 72575432 (-)
G294697 NA other upstream 990394 72775407 ~ 72776607 (-)
LOC110520539 mfsd9 other upstream 1091326 72870852 ~ 72881264 (-)

Expression


Co-expression Network