LOC118964324


Basic Information

Item Value
gene id LOC118964324
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71808055 ~ 71810394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051370.1
tcctcctctcatatGCCAGGTACCATGTCTCTATCATCTGGGCTTTCTAAGGCTATAAACTCTTCCCCTCACTCTGCTGGATCAGAAAACATGTGATCTATCTCTCCACATGACAGCAACGTTTTCTTCTCTTCCTCAGTTGCGTAGCGGGGGAGAACCATCAGGGGGCCCTGCGCTGCTGAGGTCGGTGCTGTGGAGATCCCTCCACTTCCTGGTTTACGGGCTGCTACATGACAGCGCCGACAGCCCCAGCCATTAGAAGATTAGCCGGATCGTTCACTGGCGTGCCAGGATGGATCAGGAATAAAATGATTCCAGACACTCTATAGAAATCTAGGAGGTGGTGACAGAATGCAGCAAGGATGACGTCTTCTCTCTGAGGCATCCTGCCCCCTGCCGTCTGAAATGGACTGCTCTACTGAATCAGTCTGAATCCACTGAGTGACAAACTCACAGGCACTACATTGACACCTGTCAGTCCATTTATACAGGCCAGGGGTAAACATCACTTGATGAAGTCAAACAGACTGACTTCTAAGAGATGCCCAAAGAAAGCTCATACATATGATGGAATGATGTTTAAAAATGGAGGGTGCAGACGGACAGACGTACTGATGGATGAAGGTAGAGACAGGCAGAAATATAGATTTGCAGACAGATAAAAGTGCGTATGTCCTGAGATCCTAACATCAGAAACCTTGTCCTCATTTGTGTCTTACCTCAGAAGATGAATGGAGCCAGTGTCAGTGTAAAATAACGATTCAGTCTCTTAGTGAAATTGTTCATATGATGGACCTGTGCAGCCATTTACATCAATGAAACCTGTCATTTTCCCTCCCAAGTCAAATGACTCTTTTCATCTTTTCATGCATTCTTCAACCCAAGAGCACTCAGGCATTTGGCAAACCCAACGCTCCACTGGTCTGACActacactctcagaaaaaaatggttaCAAAATGGTTCTGcggctgtctccataggagaacccttttaaaCTCAACTCCCTTTTTAGTttcaggtagaactattttgggttccatgtagaactctctgtggaaaggattCTGCATGGAAcagaaaggggttcttcaaaaggttctcctatggagacagccgaagaaccctttttggttctagatagcaactTTTTTTTCTAAGTGTAAGAGCAATGTCAAACGGCATTATGACCGAACACACATAATCGATAGACAGATTGACATTTTAAGCACATTTGTATCTAAGTAGTGTATAAGGTGGTTTATGTCAGCATATATTAACAGAAAGACAGACCAAAGACAGACTGTGTGGAAGAATAGTGACATCATTCTTCGTGTTCAGAAAGACAAAAACTTGATTCAGGCTCCACACAAGCAGTTGGACCAATTCCGTGCTGTAGGGAGTGGTGAGGTCCATTGTTGGCAAAGTACACTactagggaaagggggatacctagtcagttgtacaactgaatgcattcaactgaaatgtgtcttccgcatttaacccaacctctgcatttaacccaacccctctattAGTCCATGGGGTGGCAAAGGTTTAATGATGTTAAATTGTTCTCCACCAACTCCTGATCAAATTGATATATGATAACCATATAAGTTTTTCACACGTGTGTATATCTTAATGTATAGGGAATCTATGCAATAGAATGTTTGCAGGCTGATAAAAGAATGCTGAGACAAGTTGGAATTTCCACATGCACATTGAAAATGACTGTATCAAACAACAATGGAACATTCTACTCGGCTATTCTCATATTAAAAACCATGGGATATAGTACAGTGatgctatcaagagcagtgtACGGGTTTCTTCTTTATTCTCATATTAAAAACCATGGGATATAGtacagtgatactatcaagagcagtgtacGGGTTTCTTCTTTATTCTCATATTAAAAACCATGGGATATAGtacagtgatactatcaagagcagtgtacGGGTTTCTTCTTTATTCTCATATTAAAAACCATGGGATATAGtacagtgatactatcaagagcagtgtacGGGTTTCTTCTTTATTCTCATAT
>TU332815
AGGGGGCCCTGCGCTGCTGAGGTCGGTGCTGTGGAGATCCCTCCACTTCCTGGTTTACGGGCTGCTACATGACAGCGCCGACAGCCCCAGCCATTAGAAGATTAGCCGGATCGTTCACTGGCGTGCCAGGATGGATCAGGAATAAAATGATTCCAGACACTCTATAGAAATCTAGGAGGTGGTGACAGAATGCAGCAAGGATGACGTCTTCTCTCTGAGGCATCCTGCCCCCTGCCGTCTGAAATGGACTGCTCTACTGAATCAGTCTGAATCCACTGAGTGACAAACTCACAGGCACTACATTGACACCTGTCAGTCCATTTATACAGGCCAGGGGTAAACATCACTTGATGAAGTCAAACAGACTGACTTCTAAGAGATGCCCAAAGAAAGCTCATACATATGATGGAATGATGTTTAAAAATGGAGGGTGCAGACGGACAGACGTACTGATGGATGAAGGTAGAGACAGGCAGAAATATAGATTTGCAGACAGATAAAAGTGCGTATGTCCTGAGATCCTAACATCAGAAACCTTGTCCTCATTTGTGTCTTACCTCAGAAGATGAATGGAGCCAGTGTCAGTGTAAAATAACGATTCAGTCTCTTAGTGAAATTGTTCATATGATGGACCTGTGCAGCCATTTACATCAATGAAACCTGTCATTTTCCCTCCCAAGTCAAATGACTCTTTTCATCTTTTCATGCATTCTTCAACCCAAGAGCACTCAGGCATTTGGCAAACCCAACGCTCCACTGGTCTGACActacactctcagaaaaaaatggttaCAAAATGGTTCTGcggctgtctccataggagaacccttttaaaCTCAACTCCCTTTTTAGTttcaggtagaactattttgggttccatgtagaactctctgtggaaaggattCTGCATGGAAcagaaaggggttcttcaaaaggttctcctatggagacagccgaagaaccctttttggttctagatagcaactTTTTTTTCTAAGTGTAAGAGCAATGTCAAACGGCATTATGACCGAACACACATAATCGATAGACAGATTGACATTTTAAGCACATTTGTATCTAAGTAGTGTATAAGGTGGTTTATGTCAGCATATATTAACAGAAAGACAGACCAAAGACAGACTGTGTGGAAGAATAGTGACATCATTCTTCGTGTTCAGAAAGACAAAAACTTGATTCAGGCTCCACACAAGCAGTTGGACCAATTCCGTGCTGTAGGGAGTGGTGAGGTCCATTGTTGGCAAAGTACACTactagggaaagggggatacctagtcagttgtacaactgaatgcattcaactgaaatgtgtcttccgcatttaacccaacctctgcatttaacccaacccctctattAGTCCATGGGGTGGCAAAGGTTTAATGATGTTAAATTGTTCTCCACCAACTCCTGATCAAATTGATATATGATAACCATATAAGTTTTTCACACGTGTGTATATCTTAATGTATAGGGAATCTATGCAATAGAATGTTTGCAGGCTGATAAAAGAATGCTGAGACAAGTTGGAATTTCCACATGCACATTGAAAATGACTGTATCAAACAACAATGGAACATTCTACTCGGCTATTCTCATATTAAAAACCATGGGATATAGTACAGTGatgctat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051370.1 False 2061 mRNA 0.42 2 71808055 71810394
TU332815 True 1652 lncRNA 0.42 2 71808217 71810147

Neighbor

gene id symbol gene type direction distance location
il1rapl1a LOC106586724 coding upstream 101369 71280049 ~ 71706686 (+)
LOC110520513 LOC106586698 coding upstream 805763 70962179 ~ 71002292 (+)
LOC110520514 dcbld2 coding upstream 863405 70909357 ~ 70944650 (+)
LOC110520508 abi3bp coding upstream 1038548 70711131 ~ 70769507 (+)
LOC110504631 LOC106582154 coding upstream 1152174 70612151 ~ 70655881 (+)
LOC110520521 LOC106586720 coding downstream 117962 71928356 ~ 71944540 (+)
LOC110520522 LOC106586718 coding downstream 136973 71947367 ~ 71975611 (+)
LOC110520528 NA coding downstream 193151 72003545 ~ 72008381 (+)
LOC110504668 LOC106586734 coding downstream 754220 72564614 ~ 72603217 (+)
LOC118944715 LOC106586740 coding downstream 795589 72605983 ~ 72623644 (+)
G293475 NA non-coding upstream 15342 71792331 ~ 71792713 (+)
G293474 NA non-coding upstream 17665 71790153 ~ 71790390 (+)
G293462 rnaseh2b non-coding upstream 22998 71778799 ~ 71785057 (+)
G293461 NA non-coding upstream 33485 71755659 ~ 71774570 (+)
G293453 NA non-coding upstream 67003 71740847 ~ 71741052 (+)
G293783 NA non-coding downstream 24963 71835357 ~ 71835599 (+)
G293809 NA non-coding downstream 45392 71855786 ~ 71856029 (+)
G293821 NA non-coding downstream 50110 71860504 ~ 71861400 (+)
G293837 NA non-coding downstream 95001 71905395 ~ 71905640 (+)
G293841 NA non-coding downstream 100134 71910528 ~ 71910786 (+)
G293450 NA other upstream 69880 71737805 ~ 71738175 (+)
G293204 NA other upstream 441632 71366183 ~ 71366423 (+)
LOC110520507 senp7 other upstream 1226966 70576887 ~ 70597458 (+)
LOC110520493 LOC106586690 other upstream 1737698 70057383 ~ 70070470 (+)
G294147 NA other downstream 438566 72248960 ~ 72249987 (+)
G294162 NA other downstream 479954 72290348 ~ 72292583 (+)
G294772 NA other downstream 1088874 72899268 ~ 72899634 (+)
c3h2orf49 cssa25h2orf49 other downstream 1208441 73018800 ~ 73022950 (+)

Expression


Co-expression Network