trim13 (LOC106586719)


Basic Information

Item Value
gene id trim13
gene name LOC106586719
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71932421 ~ 71937033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597901.2
gtTGCATGTTGCTATACGCTTGCAAAAGCTGTCATAACCATCCTCAATACCGTGCCAATTGGACATACTCGTGTGTGATCTAATTTATAGACTGAAACTTGTTTATACTGAGTGGTAATCGTTGGTGGAAGTTTGTGTTTATGCAGCATAGCTTATATTGCTAAGGATACGTTTCAGCAGGCTATTAACATTAAAGCAGAAGTCAAATCTAAAGTGAGTGGGAACTTAGTCGTTACCATCTCATCTATATATAGACCAGTTGGATGAAACGGCTGTGTCGTGATTGCGTGATATCCCGTCTCAAAAAAAAACCCATCTAGTGTGAACAGTAAACTAGGTCGTTGAACATAGGAAAAAAAAATAGGGACCGTTGCGATAGGTTTTTCACTGTAGCCAAATAGTCTATGCATCTAGGCATGATGTTCCACTGCGCTTTCTATTTTCATATTTTACTCGGGTACATCGACACCTCATTTTCCTTTTTGAGGGTGGCTGAATTTTAACACCAGTCGCTGGAGTGGATAGTCTGTGCGTTTTATCCAAAGTGTTGTCATGCGTAATTCTAGTGATGTGCATTTCCACCATCACTACCTGTGAATTATTGCGCTGTTGGGTGATGTAGCTAAACAAACGGAACACCATGGAGCTTCTAGAGGAGGACCTGACTTGCCCAATTTGCTGCTGTCTCTTTGAGGACCCCCGAGTTTTGCCGTGCTCACACAGCTTCTGCAAGAAGTGCTTGGAGGGGATTCTGGAGGGGAACAACCGAGGACCTGTTTGGAGACCCCCGTTCAAATGCCCCAGTTGCCGCAAGGAGACTCCTCAAAACGGCATAAACAGCCTCCAGATCAACTACTCGTTACGTGGAATCGTTGAGAAATACAACAAAATCAGAGTGTTGCCCAGGATGGCCCTGTGCAAACACCACAGTGGTCAACCGCTTAATATATTCTGTGCCACAGACTTGAAACTTATTTGTGGATTTTGTGCAACAACTGACGACCATAAAGGACATACATTCTGTGCCCTGGAAGACGCGTACGAGCAGGAGAAATCCGCATTTGAGGAGCTGTCCCAGGGAGTGGAGAGTTGGCACAGCACGGATATTCTATCCTGCCTGGAGACACTGGAAGCCAGTAAGAAAAAGGCGCTCCAGTTAGTTTCCAGGGACGCAGAGAAAGTAACCGAATATTTTGTCAAACTGATCAACGCCCTGGACCACAAAAAGAACGAGATCCTCTCTGATTTTGAGACGCTGAAGTTGGTGGTGATGCAAGCCTACGACCCAGAGATCAATAAATTGAGCGATGCGTTGGAGGAGCAGAAGCGCGCTCTCAGCATCGCCGAGTCCTTCAGGAATGTGACCGACCCCCTTTGCTTTCTCGAGCAGATGCAGGAGTTCAGGGAGAAGTTGCGCGTTGTCCGGGAAACTCCGCTGCCCTCCCGGACAGACATGGACGTCGGTCCCTTGGTCAGGAATTTTGACGTCAAAAATTGGGACTCGATGAAGCTCAAAGATGTGGACAAGCTCTCCGTTCCGCACGAGAGTGGCGTGTATAGCTCAACGACCCCGCATTCCGGCGGCAGCGCGCTGGGGAGAGTGGTCGTGTTTTTTGTGTGCCTTTTATGCGCCCTGGTCCTGCTGCAGCCGGACAGCCTGACCGCGGTGTCAGCCCAAATCTCCTCGCTCGGCAATGTCTATCTGCCAgtgctggctggatggctggaacTGGCTCACGGTGCGTGGCAGTGCTGGGGAGAGGTAGTGGATGCCTGCGTTGCCTGGTGGGTGCGTTTCTGAACTGTATCCCGAACCTCATTAAGACACCTGCCGATTTTCTTGACCGCCTTGTAAACACAACTAGCGAATTTCTTAGCCGTTGTAAATTTCTTTAGATTTCCCGAGTGTTATTTTTGCTACATGGATCTGAAGCAAGCAATGTCCATGCTATAAGTAGATTTATAGCAAACACTAGAAAGCTATTCAAGTATTTAGAAGCACATATGTATCATGCTTTgtgaatttatatatatatatatatataatctaaaCGTAGAACAACCATACAACACTAAGTTAAATCAAAACACTATTGCAGTACATTAAATGTTGTCATTTGAGAACGCTATTCTGGTGAGTGTTAAGCATCAGCTCTGACCAGGAGCACCATCCATCCTTCTCCAAGCCATATGATCGATCACACAGGTCAGTCTGTCACCTCAGGATATTTCTTTTACTATACATTCCACAGGCTAGATTGTAGGATAGGAATAATATTTACATCGAGTTTAAGTGCTGTCGTTTATTTTTGCCTTACTTTAATTGACCATCTGTTGAGTTGTCATAATGCCTCATACCCTGTCACCAGACTCATTTTTTTGCCTAATAAAACATACATTTGGTATTTTCCTTCATCTTTATTTTTGAGTGACTGAGGGGATTTCACAAATTGTGGAGGCACTTTTTTTCGCACGTGTAGGCTACTTTACCGGTCAAGGTCATAAGTGAAGCTTCAATTGGTGCGCCTGCACACTGCTCATGTGACATGAAATACCATGCACCCGCACAGGCGTTCAAATGCTCGTTTGATGTTTGTCTTCCCTGTGGATCGGTCATCACCGCGCGATTTAACCTCCACCGGGGCCAAGGTTGAATGTTGCATAACTAGGCCTATA
>XM_021597900.2
CAATGTGTCAAGCTTGGGACACATGGCATGATCAAATGTGTGTAGAGTGGGAATTCCATCTGGGATCAAATAACGCGGCAAATGTCTGTAATGAGCACCAATATTGTTGCTGGGTAGGCCTACATGTCGTCAGTTAAAAAAGGAGCCAGTTCAGTAGCCTATCACCAAGTCTTTTGAGAACACTTCCAATAGGCTACTTTGTATCCATGCACTGGGTATCAGTGGGGATGAAAATTACAATGCAAATTGACATGCACTATTGCCTGACGTTCAAACTTCACACATAAGAATCGATTAACGTTACTTCAAGTTCATAATGACGTATACAAATGGTGCGATGGAGGCAGTGATCAAAAGCCGGGTGACTAAGAACCTAGTAGTTGACAATCTTTCACGATGTAAAAATGTTTTGCATAGCAACAGCCCGCCTCCACTCTCCAATTTGCAGGGATCCTCTATATTTTTCCTACTGAAAAATAAAACGCATCTTGTTCTTTAaaagaaaaaaatatgtacttAAAAAAACGCTGCCATTAATATCACTGAGATGTTTTTTTACTTTCTGCGCGCCACTGTATCAGGCGCGTACTATAGTGCGCGCTATTTGGAGCTGGAAGGTTCGCTAGTGTAGTGCTGTGGTCATGAAATGGTTAATTTTTTCTCCCGGAAAGGGCGAAGTCTGCACAGCAACAAGCGCCATGATTGCGTTGCACTGTGCGTCTCAGCAGCTGAACACCATGGAGCTTCTAGAGGAGGACCTGACTTGCCCAATTTGCTGCTGTCTCTTTGAGGACCCCCGAGTTTTGCCGTGCTCACACAGCTTCTGCAAGAAGTGCTTGGAGGGGATTCTGGAGGGGAACAACCGAGGACCTGTTTGGAGACCCCCGTTCAAATGCCCCAGTTGCCGCAAGGAGACTCCTCAAAACGGCATAAACAGCCTCCAGATCAACTACTCGTTACGTGGAATCGTTGAGAAATACAACAAAATCAGAGTGTTGCCCAGGATGGCCCTGTGCAAACACCACAGTGGTCAACCGCTTAATATATTCTGTGCCACAGACTTGAAACTTATTTGTGGATTTTGTGCAACAACTGACGACCATAAAGGACATACATTCTGTGCCCTGGAAGACGCGTACGAGCAGGAGAAATCCGCATTTGAGGAGCTGTCCCAGGGAGTGGAGAGTTGGCACAGCACGGATATTCTATCCTGCCTGGAGACACTGGAAGCCAGTAAGAAAAAGGCGCTCCAGTTAGTTTCCAGGGACGCAGAGAAAGTAACCGAATATTTTGTCAAACTGATCAACGCCCTGGACCACAAAAAGAACGAGATCCTCTCTGATTTTGAGACGCTGAAGTTGGTGGTGATGCAAGCCTACGACCCAGAGATCAATAAATTGAGCGATGCGTTGGAGGAGCAGAAGCGCGCTCTCAGCATCGCCGAGTCCTTCAGGAATGTGACCGACCCCCTTTGCTTTCTCGAGCAGATGCAGGAGTTCAGGGAGAAGTTGCGCGTTGTCCGGGAAACTCCGCTGCCCTCCCGGACAGACATGGACGTCGGTCCCTTGGTCAGGAATTTTGACGTCAAAAATTGGGACTCGATGAAGCTCAAAGATGTGGACAAGCTCTCCGTTCCGCACGAGAGTGGCGTGTATAGCTCAACGACCCCGCATTCCGGCGGCAGCGCGCTGGGGAGAGTGGTCGTGTTTTTTGTGTGCCTTTTATGCGCCCTGGTCCTGCTGCAGCCGGACAGCCTGACCGCGGTGTCAGCCCAAATCTCCTCGCTCGGCAATGTCTATCTGCCAgtgctggctggatggctggaacTGGCTCACGGTGCGTGGCAGTGCTGGGGAGAGGTAGTGGATGCCTGCGTTGCCTGGTGGGTGCGTTTCTGAACTGTATCCCGAACCTCATTAAGACACCTGCCGATTTTCTTGACCGCCTTGTAAACACAACTAGCGAATTTCTTAGCCGTTGTAAATTTCTTTAGATTTCCCGAGTGTTATTTTTGCTACATGGATCTGAAGCAAGCAATGTCCATGCTATAAGTAGATTTATAGCAAACACTAGAAAGCTATTCAAGTATTTAGAAGCACATATGTATCATGCTTTgtgaatttatatatatatatatatataatctaaaCGTAGAACAACCATACAACACTAAGTTAAATCAAAACACTATTGCAGTACATTAAATGTTGTCATTTGAGAACGCTATTCTGGTGAGTGTTAAGCATCAGCTCTGACCAGGAGCACCATCCATCCTTCTCCAAGCCATATGATCGATCACACAGGTCAGTCTGTCACCTCAGGATATTTCTTTTACTATACATTCCACAGGCTAGATTGTAGGATAGGAATAATATTTACATCGAGTTTAAGTGCTGTCGTTTATTTTTGCCTTACTTTAATTGACCATCTGTTGAGTTGTCATAATGCCTCATACCCTGTCACCAGACTCATTTTTTTGCCTAATAAAACATACATTTGGTATTTTCCTTCATCTTTATTTTTGAGTGACTGAGGGGATTTCACAAATTGTGGAGGCACTTTTTTTCGCACGTGTAGGCTACTTTACCGGTCAAGGTCATAAGTGAAGCTTCAATTGGTGCGCCTGCACACTGCTCATGTGACATGAAATACCATGCACCCGCACAGGCGTTCAAATGCTCGTTTGATGTTTGTCTTCCCTGTGGATCGGTCATCACCGCGCGATTTAACCTCCACCGGGGCCAAGGTTGAATGTTGCATAACTAGGCCTATA
>XM_021597903.2
GACCCGATGACCAAAGTCGCCATGACATGATGGATCCATTATAGCCATGACCATCGTCATATTGTAGCTGTAGACCTGTCTTATCCTAACCTGTTACGAAAAGTCACTAAGGACACAAGTTGGATTCAGACGTCCATTTTATAACGAGGGACACATTTCACTTTACATCTGAACACCATGGAGCTTCTAGAGGAGGACCTGACTTGCCCAATTTGCTGCTGTCTCTTTGAGGACCCCCGAGTTTTGCCGTGCTCACACAGCTTCTGCAAGAAGTGCTTGGAGGGGATTCTGGAGGGGAACAACCGAGGACCTGTTTGGAGACCCCCGTTCAAATGCCCCAGTTGCCGCAAGGAGACTCCTCAAAACGGCATAAACAGCCTCCAGATCAACTACTCGTTACGTGGAATCGTTGAGAAATACAACAAAATCAGAGTGTTGCCCAGGATGGCCCTGTGCAAACACCACAGTGGTCAACCGCTTAATATATTCTGTGCCACAGACTTGAAACTTATTTGTGGATTTTGTGCAACAACTGACGACCATAAAGGACATACATTCTGTGCCCTGGAAGACGCGTACGAGCAGGAGAAATCCGCATTTGAGGAGCTGTCCCAGGGAGTGGAGAGTTGGCACAGCACGGATATTCTATCCTGCCTGGAGACACTGGAAGCCAGTAAGAAAAAGGCGCTCCAGTTAGTTTCCAGGGACGCAGAGAAAGTAACCGAATATTTTGTCAAACTGATCAACGCCCTGGACCACAAAAAGAACGAGATCCTCTCTGATTTTGAGACGCTGAAGTTGGTGGTGATGCAAGCCTACGACCCAGAGATCAATAAATTGAGCGATGCGTTGGAGGAGCAGAAGCGCGCTCTCAGCATCGCCGAGTCCTTCAGGAATGTGACCGACCCCCTTTGCTTTCTCGAGCAGATGCAGGAGTTCAGGGAGAAGTTGCGCGTTGTCCGGGAAACTCCGCTGCCCTCCCGGACAGACATGGACGTCGGTCCCTTGGTCAGGAATTTTGACGTCAAAAATTGGGACTCGATGAAGCTCAAAGATGTGGACAAGCTCTCCGTTCCGCACGAGAGTGGCGTGTATAGCTCAACGACCCCGCATTCCGGCGGCAGCGCGCTGGGGAGAGTGGTCGTGTTTTTTGTGTGCCTTTTATGCGCCCTGGTCCTGCTGCAGCCGGACAGCCTGACCGCGGTGTCAGCCCAAATCTCCTCGCTCGGCAATGTCTATCTGCCAgtgctggctggatggctggaacTGGCTCACGGTGCGTGGCAGTGCTGGGGAGAGGTAGTGGATGCCTGCGTTGCCTGGTGGGTGCGTTTCTGAACTGTATCCCGAACCTCATTAAGACACCTGCCGATTTTCTTGACCGCCTTGTAAACACAACTAGCGAATTTCTTAGCCGTTGTAAATTTCTTTAGATTTCCCGAGTGTTATTTTTGCTACATGGATCTGAAGCAAGCAATGTCCATGCTATAAGTAGATTTATAGCAAACACTAGAAAGCTATTCAAGTATTTAGAAGCACATATGTATCATGCTTTgtgaatttatatatatatatatatataatctaaaCGTAGAACAACCATACAACACTAAGTTAAATCAAAACACTATTGCAGTACATTAAATGTTGTCATTTGAGAACGCTATTCTGGTGAGTGTTAAGCATCAGCTCTGACCAGGAGCACCATCCATCCTTCTCCAAGCCATATGATCGATCACACAGGTCAGTCTGTCACCTCAGGATATTTCTTTTACTATACATTCCACAGGCTAGATTGTAGGATAGGAATAATATTTACATCGAGTTTAAGTGCTGTCGTTTATTTTTGCCTTACTTTAATTGACCATCTGTTGAGTTGTCATAATGCCTCATACCCTGTCACCAGACTCATTTTTTTGCCTAATAAAACATACATTTGGTATTTTCCTTCATCTTTATTTTTGAGTGACTGAGGGGATTTCACAAATTGTGGAGGCACTTTTTTTCGCACGTGTAGGCTACTTTACCGGTCAAGGTCATAAGTGAAGCTTCAATTGGTGCGCCTGCACACTGCTCATGTGACATGAAATACCATGCACCCGCACAGGCGTTCAAATGCTCGTTTGATGTTTGTCTTCCCTGTGGATCGGTCATCACCGCGCGATTTAACCTCCACCGGGGCCAAGGTTGAATGTTGCATAACTAGGCCTATA

Function

NR:

description
tripartite motif-containing 13-like isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12003 TRIM13; tripartite motif-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597901.2 False 2676 mRNA 0.46 2 71932421 71935177
XM_021597900.2 False 2773 mRNA 0.46 2 71932421 71935929
XM_021597903.2 True 2213 mRNA 0.47 2 71932421 71937033

Neighbor

gene id symbol gene type direction distance location
rnaseh2b rnaseh2b coding downstream 147408 71774030 ~ 71785013 (-)
LOC110504652 LOC106586714 coding downstream 167677 71754279 ~ 71764744 (-)
LOC110520517 LOC106586722 coding downstream 216062 71708482 ~ 71716359 (-)
LOC118964323 NA coding downstream 256250 71672459 ~ 71676171 (-)
cmss1 cmss1 coding downstream 922702 70950681 ~ 71009719 (-)
LOC110505427 LOC106586716 coding upstream 40780 71977813 ~ 71979314 (-)
LOC110520524 NA coding upstream 49287 71986320 ~ 71996884 (-)
LOC110520527 LOC106586729 coding upstream 60321 71997354 ~ 72005789 (-)
LOC110520523 LOC106582019 coding upstream 73662 72010695 ~ 72114513 (-)
LOC110504660 LOC106582021 coding upstream 184941 72121974 ~ 72206818 (-)
G294012 NA non-coding downstream 7131 71925077 ~ 71925290 (-)
G294011 NA non-coding downstream 8122 71924064 ~ 71924299 (-)
G294008 NA non-coding downstream 17254 71914933 ~ 71915167 (-)
G294006 NA non-coding downstream 21877 71910309 ~ 71910544 (-)
G294002 NA non-coding downstream 24997 71907041 ~ 71907424 (-)
G294015 NA non-coding upstream 8157 71945190 ~ 71945443 (-)
G294042 NA non-coding upstream 42768 71979801 ~ 71980106 (-)
G294045 NA non-coding upstream 80042 72017075 ~ 72018622 (-)
G293991 NA non-coding upstream 178464 72115497 ~ 72118615 (-)
G294093 NA non-coding upstream 221942 72158975 ~ 72159261 (-)
G293984 NA other downstream 28513 71903314 ~ 71903908 (-)
G292919 NA other downstream 892269 71027619 ~ 71040152 (-)
G292753 NA other downstream 1211830 70720036 ~ 70720591 (-)
G291977 NA other downstream 1824471 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 1935816 69980346 ~ 69996605 (-)
G294451 NA other upstream 634216 72571249 ~ 72575432 (-)
G294697 NA other upstream 838374 72775407 ~ 72776607 (-)
LOC110520539 mfsd9 other upstream 939306 72870852 ~ 72881264 (-)
G296011 NA other upstream 1635259 73572292 ~ 73572911 (-)

Expression


Co-expression Network