LOC110520522 (LOC106586718)


Basic Information

Item Value
gene id LOC110520522
gene name LOC106586718
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71947367 ~ 71975611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597906.2
CCCGTCACCGAGCTCCTCCCTCATACTACCCATCTGAATTACGTCTGGTCGCCCCTGTGCTCAGCAGTATATTTACAGTGCTCTGCCTTTCACTGGAGATCAAACGCCGGAGTACTCACGAACCAAGCAAACAGACATGGCAGAAAACGCCGACTTGGATAACCACCGTATCAAGAGCTTCAAAAACAAGGGACGCGATGTCGAGACTATGAGAAGACATCGAAATGACGTGACAGTGGAACTGAGAAAGAACAAACGAGACAAGCATCTACTGAAGAAGAGGAACGTCCCACAGGAGGACAGTCTTGAGGACTCCGACATAGACTCTGACTTCAAAGGGCAAAACGTCACACTAGAAGTTATGTTACAGAATGCCGTCAGTGATAACGCTGTGGTCCAGCTCAGTGCCGTACAGGCTGCCagAAAACTCCTCTCCAGTGACAGAAACCCTCCCATTGATGACTTGATAAAGTCTGGCATCCTGCCCATCCTAGTCAAATGTCTGGAGAGAGACGACAATCCGTCTCTCCAGTTCGAGGCAGCCTGGGCCCTGACCAACATAGCGTCTGGTACTTCACAACAGACCCAGGCTGTGGTCAAATCCAATGCTGTTCCCCTGTTCCTGCGACTGCTCCACTCTCCCCATCAGAATGTGTGTGAACAGGCTGTGTGGGCACTAGGCAACATCATAGGCGACGGGCCACAGTGCAGAGATTATGTCATCTCCCTGGGTGTGGTCAAGCCCCTGCTGTCCTTCATtaacccttccatccccatctcctTCCTCCGCAACGTCACCTGGGTCATCGTAAACCTCTGTCGCAACAAGGAGCCACCACCCCCCATGGAGACAGTACAGGagATTGTTCCAGCTCTGTGTGTTCTTCTATACCACACAGATATAAATATCCTGGTGGACACGGTGTGGGCTCTGTCCTATCTGACAGATGGTGGGAACGAGCAGATTCAGATGGTGATAGACTCTGGCGTAGTCCCCTTCCTCGTTCCTCTGCTCAGCCACCAGGATGTCAAAGTTCAGACTGCTACGCTGAGGGCAGTAGGCAACATTGTGACAGGGACAGACGAGCAGACACAGATGGTTCTCAACTGTGAAGTCCTCTCCCACTTCCCCAACCTGCTCACACACCCCAAAGAGAAGATCAACAAgGAAGCAGTGTGGTTCCTGTCCAATATCACGGCTGGGAACCAGCAGCAGGTTCAGGCTGTGATTGACGCAGGACTCATCCCCTTGATTATCCACCAACTGGCCAAGGGGGACTTTGGGACTCAGAAGGAGGCAGCGTGGACCATCAGCAACCTCACCATCAGTGGCCGGAAAGACCAGGTGGAGTACTTGGTGCAGCAGAATGTAGTCCCTCCTTTCTGCAGCCTGCTTTCAGTGAAGGACCCCCAGGTGGTCCAGGTACTCCTAGACGGCCTCAAGAACGTCCTCATCATGGCCGGGGACGAGGCCGGCACCATCACTGAGATCATAGAGGAGTGTGGAGGTCTGGAGAAGATTGAGAATCTGCAGCAACATGAGAATGAGGACATCTACAAACTAGCCTTCGAGATTATTGACCAGTACTTCTCAGGCGATGATATTGATGAGGATCCCAGTTTGATTCCTGAAGCCACCCAAGGAGGGACCTTCGACTTTGACCCCGCCTCCAGCCTGCAGAAGGAGTTCAAGTTCTAGGAGCCAATCCATCCAGCTTCACTAGTACTGTCTAACCAACCCCAGACATTCATCCATCTATCTCTCCTCCTATCTGGCAACCTAATACAGAAGGATTGAACCCACCTACTACCATCACTATTACTCCAACATGGCAACCCACCTTGCGATTGAAGGATTCACCCACCAACTCCACAATACGCCACCTCTGCACTGAAAAGGTTACTTAAAACTACCACCTGCCACCACAACCTGGCAACCCAACACAAACGGGTCCAGGTAATGAATCCAGCACCAGTACAATCTGGCCACCCATGTGGGGAGGATCTCAGGCAATCTTAGCAAATGCTTTGAAATGTCACGTGAAAATCACAAAGGAAGAAAAAGCCTTTTGAGTCAGTATTTTTGAATTGCCAAATGTCACAACTACACACtcgcacaaaaacacacagttGAAGACACTTGGGAATAGTTTCTTTGCATATTTGTTTTAGAAAACAATATCACGATACTGCGGTATCGGAAAGGATACTGCGGTATCGGAAAGGATACTGCGGTATCGGAAAGGATACTGCGGTATCGGAAAGGATACTGCGGTTTATTTTTGTGCTTCACCTCTGGATTGTCCCCTGGTCGTGGACCTttgctcgctctccctctcccttgatGTCCGAGTGCCCCCAATTAAAGATGTTTACCTCAGAGCGAAACCATGAACAGGCATGGACCCTGTCCTCGTCCCCAAAGTCCTAGGACAGGAAGAGGCGGGATTAAGGCAGGGAGAGGTTTTTAGGCAGACTGACGAGACATTTTGActcatattattttatttttttgcttttgACTTCTTGAATCATGAGTTATGgatttttatttataaaaaatacatgtaattaaaaaatatataatgctGCAAAACTGGTTCGTATAAGTATATAATTGTTTTGCAATTTTGCTCTAATTCAGGGGAGAGCAAAATAAAAAAGCTTAATTTTGAGAATGGTAGAGGACTAGGGCCCAAAAGCTCATTTTAACATGGGCAACTCCATTGAAGACTTTCACCATTTTAAACcaagatggtggataaataaaGATGGGTCACTCAGGCTGTTTACCATTGGAAAAAATGTAATGGGGTGGCTCTCCCATAGACATCAATGCGTAGCAGCTGAGTCTGGTCTACTTCGTTCATTGACTGCCATTGTaaaaagagagagtgggatgtcTCGCTtctagtcaactgggtgggacttcttATTGGTTAAGGAAGGCTCACATAATTCCATCTAGGTCATCAGCCAATGAATTGTACTCGTGAgtaaacattccataactgcaggtggaAGCCAACCTTGGCTtaatacctgttcaaacaacacaccacaggtggcagtatgcacccttttAGTTTGTTTACAAACTCATAGAAGTATTAGAAAatgtactacttcaaaatggagatggcctcaatggcgctgcccattcTGTCACAGACGCCATAATGGGACCGGTACAATGATGCAATGTCCACGAGGAAAACACTGTAGCCCTGTTTCCCAGAGGACATGAAATCCTGCTGCAGAAGTGATGTCACTTCCTGTGCAGAGCAGGTAGTGATGACATTGCTTGCATTAACTAATGGTTGTGTGCCACGTCATCGACTGAAAGATTGCTGTAACATATGAGTTGGTTAGCTGATATGTAAAATACGTATCCAGACTTTGTAAGATCTGGAATGCATCAGAAACACCTGGTCAGAAGAACACACCCACTGTTGGGAACTCCAACAGAAGAGTTGACTGAAAACTAAAACAAACCTATATTTGGCAACAACAAAAAGAGTATTACCTCATTCTTATAAAAAATGTGTTATATTTTATGTTGAAATAGAAAAGATTGCAAGGTTTGTCTTTTTCTGGTCCAGGTATAGAAAATCACTGAGGCCTCTAGTGGCTAAAGGTCATTAGAATGAGCAGAGCCATTGAGGGCTTGCACaattttaatgtagtcaactgggtggaacttccaacttcattggctaagccctcctggtgaccctgttggagtAATGTCCAactgggtcatcaggagggatcagccattttgaagaagaaaattgactatttaaaaaaaaattgagattGCCTCAATGGCGCCCCCCGGCCGCCGCGTCCAGGAGTCCCCCATCTCTAGGTCAAGTATGTGGAGCCTCCAGGTTTACTATTTTAACTTGTAGATTTTCTTCTGTCTTATGCACATGTCTGAGTATTAattcttcctctcttcctgccGGAAAGAAGACCGGACTAACAGAGGATAGAACACGACCTCTGACCTATACAgaactttatttttatttttttaaatgaggtCACAGTTCATAAGCTTCCTGAATGTGTATCTCTCTTAAACTCGTCTCttgagaatatataaatatatatttccaAAAAGCCTGTACAAAGCTGCTGCAGCTGAAGTCATTGTTGAAACGGACTCACTCTGCAGAACGATAACATTGGCTACTTATTGTCAAAGACTGACGGGGAGGTTGTTTCGTTTGTCGTTTTTCATTTTCattcaaatgttgttgttttttttattcataaTGGGTTGTGATGACATGCTGATGAACCTGGTACAGTTACGTCTGTCTGTAGGGACAGACTGTGTCTTTGTACCGTCCAAGAGCCAGTCCGTTTGTTTCCAGGATCTAGGAAGTGTGAGGGCTAACACAAACCCCTGGTCCCTTGTCTGGACTTATGTTCCTCTGTTATGGCCCATTCAAACAGCGCACAAAAAAAGCCGGTGAAGGATTTGTAAGGAGTGGGTTTGGAAGAGGGGGGTTTTCAAAGCAGCCCAGGCTTGTTTTGGAACGAATTGTTTATTACTGATGAACTAAACCCTAGAGGGTGTCGTGAACTATCCCTAGACGGACCGAGCCACTTTAAAGAATTACAATTCCGTTGTCTTGTATCAGAAAACGATACAAGCTTATGTTTGTTGCAAGATTTTTACTTGCCAGAGAAAAGTTGTTTTTAAAGAACTTAATAAAATGTCAGTGTTTTGGCCTTAGTttcatttatacattttagaTAGAAGAATTCACTTTTAAGGTGGCTTGCTGATGCTTTCAACTCTTGTGCACATTAAAGACGTGAGTGGAAATTCA
>TU333231
TGGTCCTGGCTCCACCGTGCCTACATGGCTGGTGTCTGTGTGAGCCTGAGAGAGATGATCTTCCTGTCATTGCTGTGTAGTGATATGTTACGTAGTGCTGACAAGCCGTGTGTCGCCAGGGGGACTTTGGGACTCAGAAGGAGGCAGCGTGGACCATCAGCAACCTCACCATCAGTGGCCGGAAAGACCAGGTGGAGTACTTGGTGCAGCAGAATGTAGTCCCTCCTTTCTGCAGCCTGCTTTCAGTGAAGGACCCCCAGGTGGTCCAGGTACTCCTAGACGGCCTCAAGAACGTCCTCATCATGGCCGGGGACGAGGCCGGCACCATCACTGAGATCATAGAGGAGTGTGGAGGTCTGGAGAAGATTGAGAATCTGCAGCAACATGAGAATGAGGACATCTACAAACTAGCCTTCGAGATTATTGACCAGTACTTCTCAGGCGATGATATTGATGAGGATCCCAGTTTGATTCCTGAAGCCACCCAAGGAGGGACCTTCGACTTTGACCCCGCCTCCAGCCTGCAGAAGGAGTTCAAGTTCTAGGAGCCAATCCATCCAGCTTCACTAGTACTGTCTAACCAACCCCAGACATTCATCCATCTATCTCTCCTCCTATCTGGCAACCTAATACAGAAGGATTGAACCCACCTACTACCATCACTATTACTCCAACATGGCAACCCACCTTGCGATTGAAGGATTCACCCACCAACTCCACAATACGCCACCTCTGCACTGAAAAGGTTACTTAAAACTACCACCTGCCACCACAACCTGGCAACCCAACACAAACGGGTCCAGGTAATGAATCCAGCACCAGTACAATCTGGCCACCCATGTGGGGAGGATCTCAGGCAATCTTAGCAAATGCTTTGAAATGTCACGTGAAAATCACAAAGGAAGAAAAAGCCTTTTGAGTCAGTATTTTTGAATTGCCAAATGTCACAACTACACACtcgcacaaaaacacacagttGAAGACACTTGGGAATAGTTTCTTTGCATATTTGTTTTAGAAAACAATATCACGATACTGCGGTATCGGAAAGGATACTGCGGTATCGGAAAGGATACTGCGGTATCGGAAAGGATACTGCGGTATCGGAAAGGATACTGCGGTTTATTTTTGTGCTTCACCTCTGGATTGTCCCCTGGTCGTGGACCTttgctcgctctccctctcccttgatGTCCGAGTGCCCCCAATTAAAGATGTTTACCTCAGAGCGAAACCATGAACAGGCATGGACCCTGTCCTCGTCCCCAAAGTCCTAGGACAGGAAGAGGCGGGATTAAGGCAGGGAGAGGTTTTTAGGCAGACTGACGAGACATTTTGActcatattattttatttttttgcttttgACTTCTTGAATCATGAGTTATGgatttttatttataaaaaatacatgtaattaaaaaatatataatgctGCAAAACTGGTTCGTATAAGTATATAATTGTTTTGCAATTTTGCTCTAATTCAGGGGAGAGCAAAATAAAAAAGCTTAATTTTGAGAATGGTAGAGGACTAGGGCCCAAAAGCTCATTTTAACATGGGCAACTCCATTGAAGACTTTCACCATTTTAAACcaagatggtggataaataaaGATGGGTCACTCAGGCTGTTTACCATTGGAAAAAATGTAATGGGGTGGCTCTCCCATAGACATCAATGCGTAGCAGCTGAGTCTGGTCTACTTCGTTCATTGACTGCCATTGTaaaaagagagagtgggatgtcTCGCTtctagtcaactgggtgggacttcttATTGGTTAAGGAAGGCTCACATAATTCCATCTAGGTCATCAGCCAATGAATTGTACTCGTGAgtaaacattccataactgcaggtggaAGCCAACCTTGGCTtaatacctgttcaaacaacacaccacaggtggcagtatgcacccttttAGTTTGTTTACAAACTCATAGAAGTATTAGAAAatgtactacttcaaaatggagatggcctcaatggcgctgcccattcTGTCACAGACGCCATAATGGGACCGGTACAATGATGCAATGTCCACGAGGAAAACACTGTAGCCCTGTTTCCCAGAGGACATGAAATCCTGCTGCAGAAGTGATGTCACTTCCTGTGCAGAGCAGGTAGTGATGACATTGCTTGCATTAACTAATGGTTGTGTGCCACGTCATCGACTGAAAGATTGCTGTAACATATGAGTTGGTTAGCTGATATGTAAAATACGTATCCAGACTTTGTAAGATCTGGAATGCATCAGAAACACCTGGTCAGAAGAACACACCCACTGTTGGGAACTCCAACAGAAGAGTTGACTGAAAACTAAAACAAACCTATATTTGGCAACAACAAAAAGAGTATTACCTCATTCTTATAAAAAATGTGTTATATTTTATGTTGAAATAGAAAAGATTGCAAGGTTTGTCTTTTTCTGGTCCAGGTATAGAAAATCACTGAGGCCTCTAGTGGCTAAAGGTCATTAGAATGAGCAGAGCCATTGAGGGCTTGCACaattttaatgtagtcaactgggtggaacttccaacttcattggctaagccctcctggtgaccctgttggagtAATGTCCAactgggtcatcaggagggatcagccattttgaagaagaaaattgactatttaaaaaaaaattgagattGCCTCAATGGCGCCCCCCGGCCGCCGCGTCCAGGAGTCCCCCATCTCTAGGTCAAGTATGTGGAGCCTCCAGGTTTACTATTTTAACTTGTAGATTTTCTTCTGTCTTATGCACATGTCTGAGTATTAattcttcctctcttcctgccGGAAAGAAGACCGGACTAACAGAGGATAGAACACGACCTCTGACCTATACAgaactttatttttatttttttaaatgaggtCACAGTTCATAAGCTTCCTGAATGTGTATCTCTCTTAAACTCGTCTCttgagaatatataaatatatatttccaAAAAGCCTGTACAAAGCTGCTGCAGCTGAAGTCATTGTTGAAACGGACTCACTCTGCAGAACGATAACATTGGCTACTTATTGTCAAAGACTGACGGGGAGGTTGTTTCGTTTGTCGTTTTTCATTTTCattcaaatgttgttgttttttttattcataaTGGGTTGTGATGACATGCTGATGAACCTGGTACAGTTACGTCTGTCTGTAGGGACAGACTGTGTCTTTGTACCGTCCAAGAGCCAGTCCGTTTGTTTCCAGGATCTAGGAAGTGTGAGGGCTAACACAAACCCCTGGTCCCTTGTCTGGACTTATGTTCCTCTGTTATGGCCCATTCAAACAGCGCACAAAAAAAGCCGGTGAAGGATTTGTAAGGAGTGGGTTTGGAAGAGGGGGGTTTTCAAAGCAGCCCAGGCTTGTTTTGGAACGAATTGTTTATTACTGATGAACTAAACCCTAGAGGGTGTCGTGAACTATCCCTAGACGGACCGAGCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597906.2 False 4847 mRNA 0.45 17 71947367 71975611
TU333231 True 3466 TUCP 0.44 4 71967748 71975384

Neighbor

gene id symbol gene type direction distance location
LOC110520521 LOC106586720 coding upstream 2827 71928356 ~ 71944540 (+)
LOC118964324 NA coding upstream 136973 71808055 ~ 71810394 (+)
il1rapl1a LOC106586724 coding upstream 240681 71280049 ~ 71706686 (+)
LOC110520513 LOC106586698 coding upstream 945075 70962179 ~ 71002292 (+)
LOC110520514 dcbld2 coding upstream 1002717 70909357 ~ 70944650 (+)
LOC110520528 NA coding downstream 27934 72003545 ~ 72008381 (+)
LOC110504668 LOC106586734 coding downstream 589003 72564614 ~ 72603217 (+)
LOC118944715 LOC106586740 coding downstream 630372 72605983 ~ 72623644 (+)
LOC110504677 LOC106586740 coding downstream 647670 72623281 ~ 72645503 (+)
LOC110520532 LOC106586783 coding downstream 685162 72660773 ~ 72664405 (+)
G293848 NA non-coding upstream 566 71946447 ~ 71946801 (+)
G293836 NA non-coding upstream 24116 71922955 ~ 71923251 (+)
G293841 NA non-coding upstream 36581 71910528 ~ 71910786 (+)
G293837 NA non-coding upstream 41727 71905395 ~ 71905640 (+)
G293821 NA non-coding upstream 85967 71860504 ~ 71861400 (+)
G293850 NA non-coding downstream 10703 71986314 ~ 72050738 (+)
G293855 NA non-coding downstream 35094 72010705 ~ 72013277 (+)
G293872 NA non-coding downstream 43677 72019288 ~ 72051584 (+)
G293882 LOC106582021 non-coding downstream 61401 72037012 ~ 72142107 (+)
G293914 NA non-coding downstream 123248 72098859 ~ 72155944 (+)
G293450 NA other upstream 209192 71737805 ~ 71738175 (+)
G293204 NA other upstream 580944 71366183 ~ 71366423 (+)
LOC110520507 senp7 other upstream 1366278 70576887 ~ 70597458 (+)
LOC110520493 LOC106586690 other upstream 1877010 70057383 ~ 70070470 (+)
G294147 NA other downstream 273349 72248960 ~ 72249987 (+)
G294162 NA other downstream 314737 72290348 ~ 72292583 (+)
G294772 NA other downstream 923657 72899268 ~ 72899634 (+)
c3h2orf49 cssa25h2orf49 other downstream 1043224 73018800 ~ 73022950 (+)
LOC110520546 LOC106586770 other downstream 1157899 73133510 ~ 73140625 (+)

Expression


Co-expression Network