LOC110520532 (LOC106586783)


Basic Information

Item Value
gene id LOC110520532
gene name LOC106586783
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72660773 ~ 72664405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597924.2
AGAAAAAGTACTCGTGTCATCTGGACACGGTTCCTTCTCATCCAGCAGGGGGCAACCTTCTGTATAATGCTGACCTAAAATCTCCTTCTGTACTACACTGCGCGCTCTGCAGTCTGCAAAGATACGACACTGAGCCAGGTTTCCGCTTTTGGAATAGAGTGATTGTGTCAGACGTTTCAAAGCTTTTCATCATGGCGAGTCAGTCGATGGAGATCATGGCCAAAGCGCTGGAGCAGCAGGTGCTGCAGTCAGCCAGGATGGTGGAGGAGCAGTTGGACAAAGAGCTGGGGAAGCTGGAGCGCATGGATGATGACGAGATGGAAaagctgaaggagaggaggatggaggcccTCAAGAAATCCCAGAAACAGAAGCAGGAGTGGCTGTCTAAAGGGCATGGGGAGTATAAGGAAATCCCCAGTGAGAAAGATTTCTTCCCAGAGGTGAAGGAGAGCAATCGTGTGGTCTGCCATTTCTACAGAGACTCCACCTTCAGATGCAAGATCCTGGACAAGCACCTGGGCATCCTGGCCAAGAAGCACCTGGAGACTAAGTTCATCAAGCTGAATGTGGACAAGGCGCCGTTCCTGACAGAGAGGCTGCGGATCAAGGTGATTCCCACGCTGGCGCTGGTTAAGGACGGGAAGACCAAGGATTACGTGGTAGGATTCACCGACCTGGGGAACACGGACGAGTTCTCCACAGAGGTACTGGAGTGGAGATTGGGCTGCTCTGACGTCATCAACTACAGTGGTAACCTAATGGAGCCCCCCACCTTGACACAGAAATCTGGTTCAAAGTTCACCAAGGTGGAGAAGAAGACCATCAGAGGGAGAGGACACGATTCAGACTCTGGTTCTGAAGATGACTAGAAGACTGTCAGCCTTCAACCTCTGTCTCTCAGGGCTAATACCCACTAACTGGCAGAACCATCTCCTCCAGTTTTATCAttttccttctccctccccccttctgTAATTTCCTTATTTATTATAGTCTTCCATGCTTTAGTTTTCCATTTATTTTATGGATGAAATTCTGACTTATTTTGTTTGGACTTTCAATCATATTTAATGTCATTTATATTCGACTGGCAAGTAAAAGGAGGATTCCTGTCTGAGCCACTGAACTCTTTCTGCTCTGACTGGCTCCCCTTGAAATGGTTCTGTGCAGAAATGTTTCATTTGATTCCAATTTGAAGTCTAAAATCTGACCTTCAGCCTTGATGCAGTTACCCTGTATCATAACAGATTTGATTCTAATTTCTGGACTTGCATTTTTAACAAACAACCATCCTTATGAACAGTAATGCTTGCAACATTAACATCGATCCATGTCATTTGCCTTTGTTGAACCCATTCAGCGGTTCAGTAGCAACAATCAAGTGCCAGCTTCATTCCACAACCTCCATCCTCCTTCCAGTCTTGTCAGTGTGTGATGGTAGAACAGGTTTGAGGTTTTCTATAAAAAATTAGCTTGATCTTAATAAAAATAAGCTGATCATCA
>XM_036975097.1
GTAGCTTCAGTGTCTGGGCAACTTGGTCGTTTTTGACAGGtcgctaacgttagccagctagctagctagctacccagcGTTCTCTGACCACGCAGCTGTTAGCCTAGCTAACAGCCCTACCTTGATGTAGCTAGCGAGCTAGACTAAAACGACCCCGGTGATCTGTACCTTTGTTCATTTTTGACATATCTTTCTACTTTGTCTGAAAGCTGATACGATTCATAGAATAGAGTGATTGTGTCAGACGTTTCAAAGCTTTTCATCATGGCGAGTCAGTCGATGGAGATCATGGCCAAAGCGCTGGAGCAGCAGGTGCTGCAGTCAGCCAGGATGGTGGAGGAGCAGTTGGACAAAGAGCTGGGGAAGCTGGAGCGCATGGATGATGACGAGATGGAAaagctgaaggagaggaggatggaggcccTCAAGAAATCCCAGAAACAGAAGCAGGAGTGGCTGTCTAAAGGGCATGGGGAGTATAAGGAAATCCCCAGTGAGAAAGATTTCTTCCCAGAGGTGAAGGAGAGCAATCGTGTGGTCTGCCATTTCTACAGAGACTCCACCTTCAGATGCAAGATCCTGGACAAGCACCTGGGCATCCTGGCCAAGAAGCACCTGGAGACTAAGTTCATCAAGCTGAATGTGGACAAGGCGCCGTTCCTGACAGAGAGGCTGCGGATCAAGGTGATTCCCACGCTGGCGCTGGTTAAGGACGGGAAGACCAAGGATTACGTGGTAGGATTCACCGACCTGGGGAACACGGACGAGTTCTCCACAGAGGTACTGGAGTGGAGATTGGGCTGCTCTGACGTCATCAACTACAGTGGTAACCTAATGGAGCCCCCCACCTTGACACAGAAATCTGGTTCAAAGTTCACCAAGGTGGAGAAGAAGACCATCAGAGGGAGAGGACACGATTCAGACTCTGGTTCTGAAGATGACTAGAAGACTGTCAGCCTTCAACCTCTGTCTCTCAGGGCTAATACCCACTAACTGGCAGAACCATCTCCTCCAGTTTTATCAttttccttctccctccccccttctgTAATTTCCTTATTTATTATAGTCTTCCATGCTTTAGTTTTCCATTTATTTTATGGATGAAATTCTGACTTATTTTGTTTGGACTTTCAATCATATTTAATGTCATTTATATTCGACTGGCAAGTAAAAGGAGGATTCCTGTCTGAGCCACTGAACTCTTTCTGCTCTGACTGGCTCCCCTTGAAATGGTTCTGTGCAGAAATGTTTCATTTGATTCCAATTTGAAGTCTAAAATCTGACCTTCAGCCTTGATGCAGTTACCCTGTATCATAACAGATTTGATTCTAATTTCTGGACTTGCATTTTTAACAAACAACCATCCTTATGAACAGTAATGCTTGCAACATTAACATCGATCCATGTCATTTGCCTTTGTTGAACCCATTCAGCGGTTCAGTAGCAACAATCAAGTGCCAGCTTCATTCCACAACCTCCATCCTCCTTCCAGTCTTGTCAGTGTGTGATGGTAGAACAGGTTTGAGGTTTTCTATAAAAAATTAGCTTGATCTTAATAAAAATAAGCTGATCATCA

Function

NR:

description
thioredoxin domain-containing protein 9-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597924.2 False 1506 mRNA 0.46 5 72660773 72664405
XM_036975097.1 True 1579 mRNA 0.46 5 72661034 72664405
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110504677 LOC106586740 coding upstream 15270 72623281 ~ 72645503 (+)
LOC118944715 LOC106586740 coding upstream 37129 72605983 ~ 72623644 (+)
LOC110504668 LOC106586734 coding upstream 57556 72564614 ~ 72603217 (+)
LOC110520528 NA coding upstream 652392 72003545 ~ 72008381 (+)
LOC110520522 LOC106586718 coding upstream 685162 71947367 ~ 71975611 (+)
LOC110520534 LOC106586782 coding downstream 5986 72670391 ~ 72688921 (+)
LOC110504700 LOC106586781 coding downstream 35485 72699890 ~ 72771529 (+)
LOC110520535 LOC106586742 coding downstream 107346 72771751 ~ 72773059 (+)
LOC118964325 NA coding downstream 153622 72817720 ~ 72820762 (+)
slc9a2 nhe2 coding downstream 174591 72838996 ~ 72869327 (+)
G294502 NA non-coding upstream 3144 72657409 ~ 72657629 (+)
G294501 NA non-coding upstream 3704 72656768 ~ 72657069 (+)
G294499 NA non-coding upstream 7354 72652763 ~ 72653419 (+)
G294497 NA non-coding upstream 10064 72650145 ~ 72650709 (+)
G294496 NA non-coding upstream 11284 72649228 ~ 72649489 (+)
G294520 NA non-coding downstream 31279 72695684 ~ 72696172 (+)
G294542 NA non-coding downstream 64635 72729040 ~ 72729361 (+)
G294548 NA non-coding downstream 70814 72735219 ~ 72735686 (+)
G294560 NA non-coding downstream 96211 72760616 ~ 72760905 (+)
G294162 NA other upstream 368190 72290348 ~ 72292583 (+)
G294147 NA other upstream 410786 72248960 ~ 72249987 (+)
G293450 NA other upstream 922598 71737805 ~ 71738175 (+)
il1rapl1a LOC106586724 other upstream 1182826 71280049 ~ 71706686 (+)
G294772 NA other downstream 234863 72899268 ~ 72899634 (+)
c3h2orf49 cssa25h2orf49 other downstream 354430 73018800 ~ 73022950 (+)
LOC110520546 LOC106586770 other downstream 469105 73133510 ~ 73140625 (+)
ecrg4a cssa25h2orf40 other downstream 483888 73148293 ~ 73162405 (+)
G295230 NA other downstream 1288841 73953246 ~ 73957789 (+)

Expression

LOC110520532(LOC106586783) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC110520532(LOC106586783) Expression in each Bioproject

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LOC110520532(LOC106586783) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network