LOC110520539 (mfsd9)



Basic Information


Item Value
gene id LOC110520539
gene name mfsd9
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72870852 ~ 72881264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036975108.1
CTCAGCCGTGACACACGTGAAAGCACACTAACTGTTAAAGTAATGATTTAATAACTGCAGACACGTTTACGCAGTCATAGCAAGACACACAGAATGTATGCATACTAGCACAGAGTCAAGCTGAGAGTCTTGCTGAGAGAGTTGCTGTATTAGAACGACTGACAGATATTAAATACAGAGCTTGGCTTACTGTCTGACATCAGGTCGATACCACCTGGTAGATCTCTCGGTGAGCCAAATGGGACGAGACTAGACCCCAGCAGGTCAATCATCCACATGACGCTTCAATGAATCCACTTTGATTAAATGGACGCCAAATATGACAATATCGGTACATCCTCAAAAGTTTGAATTGAGGTGGTTGGAAGTTAAATTGAACACGAACACCCCTGAAGAAAGCGAATATTCCCGAGACTGCAGGGTGTAGATGACAGTAAGCGTTTCCGCATCGACCCGTAGCGTGCTGTCATTGCGGGAGAATGAACAACGCAAAATGTTGCATATTAAATCAAATACCAAGGAGACGAACACGGATTATACAATGTATCTATGTGGTGGGGTTCATGgACCTGTTTGGGGTGAGCTTGATCATTCCCCTGCTGAGTCACCATGTCAAGGCCCTTGGGGCCAGCCCCACCGTGGCAGGCTTAGTAGGCTCCACATATGGGATCCTACAACTCTTCTCTAGCACTATAGTTGGCAGCTGGAGTGACGTGGTGGGGAGGCGGTACTCTATGCTGTTGTGTCTGCTGCTGAGTGCTCTGGGCTACGGCCTGCTGGGGATGTCCACCAGCATCGCCCTGTTTCTCCTGGCTAGGATCCCTGTGGGTCTGTTCAAGCACTCCCTGTCCATCTGCCGAGCCCTGCTGTCTGATCTGGTGTCTGAGGTGGAGCGCCCCCTAGTGATGGGACACTTCAACGTGGCCTCCAGCATGGGCTTCATCTTGGGGCCCGTGGTGGGGGGCTACCTCACTGAACATGACGGAGGCTTCTACACCGCATCCTTCACCTGTGCCGCCATCTTCCTCCTCAACGCAGGTCTAGTTTGGCTGCTTCCCTGGAGCGATGCACTAACCCCACGCACCGATGCTAACTCCAACAGCAGCGCTAGCAATGCCAGCTGCCACGACAACGACAACCACTTCACCTCAACACAGCAAAACTGCTCCCAAGGCAACAGCGACAACCAAACTACAGCGCCGGCGGCAGCGGTCACGGGATCCGTGGCTCCAGAGAAGAACCAGCGGAGCTGGAGCTGGGATCTGGACTGGGGGGAGGTGTCCCTGCTCCCTTCTGCCTGGCGTCAGCTCTCTTCGGTGGGCTCCAAGATTAGCAGTGTGGCCTCCTCAGACATGTGGGACCTGTTCCTGGTGCGTCTGCTCATGGCCATGGCCATAATGCTGTACTACAGTAACTTCTCCCTGGCCATGGAGGAGCGCTTCATGCTGAAGCCCAAAGCCACAGGTTATCTAATCAGCTACAGCTCTACCCTGGGGGCCCTAGCCGGGTTCTTGGTGGGACCCATCACTAAACTGTACGGTAACAACATGTCGGCGCTGTTGCTACACTCTTCGGTCCTCACGTGTTGCCTGATCCTGCTCTACGCCGTAGCGCCCAGTGTCTGGCACGTGTTGTTAAGTTCCACTTTCATCGCCATCTCTACAACCATCGGACGCACCTGCATCACTGACCTGGTACTGCAGAAAGGGGGCGCTCACGCCAGCGGCACACTCATCGGGGCGGGGCAGTCAGTGACCGCGGTGGGGCGCGTGCTCGCACCCCTACTCTCGGGGCTGGCCCAGGAGTTTAGTCCCTGTGGGCCCCCGATTCTGGGGGTAGGGCTGGCGTTAGCGGGCATCGTCCTGCTGTTGGTCAGGGTGCCAAAATGGgatgagagggggaaagaggcatAACTCTGAGTCACTCACAGTGAGAGAGTGAATGAATGAGAGAGTGAATGAATGAGAGAGGGTCAAAACTACAACAGCACTGGAGACAGAACTGATGCAGAACTGTTGGGGTTGGTTTTTGTTAACGTGTCAGCTGGGGGTGGTtccattgtttgttttttttagccACAACTCCAGCTCTGTTGGTTGGGTCTCGatgtgatgacatcacagcaCCGATAGGACCCAGGTCATCATCAGCATCGCTCTCTTCCCCCCACTTCAGTCCCCCAAACAGACCGGGTCATCATCAGCATGGCTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGTATGGCTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGCATGGCTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGTATGGCTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGCATGGTTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGCATGGCTCTTCCCCACTTCAGTCCCCCAAACAGACCGGGTCATCATCAGCATGGCTATTCCCCACTTCAGTCCCCCAAACAGGGGAGAATGCAAAAAGTTCAGTGTTGCCAAGGCGACCGTGAACAAAGCCAGCAACCCTCTGTAAAAGGCATGGGAAGTTGTCCATGCTAAGTTAGCTTAGCGTAGGTCAACAGCATGTCAGTGGCTCATTAGGTTCTTATAACCTAGAAATATTCAAATGTTTATGTCTCTAGTGAGAGGCAATAATTcaattaaaaacaacaacatataaGTCTAATGTTACTCTAATGTAATCCTGCTCTTCCTTAACAACCACTACAAATAGTCCAGGATAGTATTGGTACTGAGAATGCTAATTTCCCCCAAATGCTCTGTTTCTGACCTATCTTATGAGGGTGGACAGCAGGTGAAGgggctcctctttcctctctggcGCCACATTCTATTTTCTCTCCCTTCTCACAGAAGTGTGCACTCCGTCACCCTCCCTTTAAGGGTTGAACATATTTGGATCAGTGTGAATACATCCACACCAATCCAGTGCTTTTGAATCCTTTTGTGTGAGTGATCTGGTACACACTGGGGAAACGGATCAAGAACCTTAACTGAGCTTGAGTACTGGTTGTCCACAGGCACATATCTAGGATTCATTTACCCTTCCTAAACCCTAACCACGCAGGGGAAGTTAAACACATTTTCCAAGGATCTTAGGTCAGTGTCTGTGGGTAACATCATCGTACTTCCTTTAACCACTACGCTATCAGGGCCTTTTCAATGGAAATCTTTACTTTTATAcaaatatataatttattttcattttatatTATTTTCCCTTATTCTACATTGTCCATATTGAGTTTAGTCTAATTCATAAATGTACTGttaattattatttatatatGAATGATCTTATTTTGAATGGAGTTGCCCTTACACTGACCCAAATGCCACTGAATGTTATGAAGACACTTATTGTGCTGAATGATTCGTATGAAGGAAGTAAAGATCATACCATTTGACAATAAAATAAGTAT
>TU334349
TCAGTCCCCCAAACAGACCGGGTCATCATCAGCATGGCTATTCCCCACTTCAGTCCCCCAAACAGGGGAGAATGCAAAAAGTTCAGTGTTGCCAAGGCGACCGTGAACAAAGCCAGCAACCCTCTGTAAAAGGCATGGGAAGTTGTCCATGCTAAGTTAGCTTAGCGTAGGTCAACAGCATGTCAGTGGCTCATTAGGTTCTTATAACCTAGAAATATTCAAATGTTTATGTCTCTAGTGAGAGGCAATAATTcaattaaaaacaacaacatataaGTCTAATGTTACTCTAATGTAATCCTGCTCTTCCTTAACAACCACTACAAATAGTCCAGGATAGTATTGGTACTGAGAATGCTAATTTCCCCCAAATGCTCTGTTTCTGACCTATCTTATGAGGGTGGACAGCAGGTGAAGgggctcctctttcctctctggcGCCACATTCTATTTTCTCTCCCTTCTCACAGAAGTGTGCACTCCGTCACCCTCCCTTTAAGGGTTGAACATATTTGGATCAGTGTGAATTTTGAATCCTTTTGTGTGAGTGATCTGGTACACACTGGGGAAACGGATCAAGAACCTTAACTGAGCTTGAGTACTGGTTGTCCACAGGCACATATCTAGGATTCATTTACCCTTCCTAAACCCTAACCACGCAGGGGAAGTTAAACACATTTTCCAAGGATCTTAGGTCAGTGTCTGTGGGTAACATCATCGTACTTCCTTTAACCACTACGCTATCAGGGCCTTTTCAATGGAAATCTTTACTTTTATAcaaatatataatttattttcattttatatTATTTTCCCTTATTCTACATTGTCCATATTGAGTTTAGTCTAATTCATAAATGTACTGttaattattatttatatatGAATGATCTTATTTTGAATGGAGTTGCCCTTACACTGACCCAAATGCCACTGAATGTTATGAAGACACTTATTGTGCTGAATGATTCGTATG
>TU334351
GAGACTGCAGGGTGTAGATGACAGTAAGCGTTTCCGCATCGACCCGTAGCGTGCTGTCATTGCGGGAGAATGAACAACGCAAAATGTTGCATATTAAATCAAATACCAAGGAGACGAACACGGATTATACAATGTATCTATGTGGTGGGGTTCATGgACCTGTTTGGGGTGAGCTTGATCATTCCCCTGCTGAGTCACCATGTCAAGGCCCTTGGGGCCAGCCCCACCGTGGCAGGCTTAGTAGGCTCCACATATGGGATCCTACAACTCTTCTCTAGCACTATAGTTGGCAGCTGGAGTGACGTGGTGGGGAGGCGGTACTCTATGCTGTTGTGTCTGCTGCTGAGTGCTCTGGGCTACGGCCTGCTGGGGATGTCCACCAGCATCGCCCTGTTTCTCCTGGCTAGGATCCCTGTGGGTCTGTTCAAGCACTCCCTGTCCATCTGCCGAGCCCTGCTGTCTGATCTGGTGTCTGAGGTGGAGCGCCCCCTAGTGATGGGACACTTCAACGTGGCCTCCAGCATGGGCTTCATCTTGGGGCCCGTGGTGGGGGGCTACCTCACTGAACATGACGGAGGCTTCTACACCGCATCCTTCACCTGTGCCGCCATCTTCCTCCTCAACGCAGGTAGGTGTGGTTTCTCCTGCGCCGCCACCTTCCTCCTCAACGCAGGTAGGTGGGGTTTCTCCTGCACCGCCAC

Function


symbol description
mfsd9 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MFSD9 (major facilitator superfamily domain containing 9).

NR:

description
PREDICTED: major facilitator superfamily domain-containing protein 9

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036975108.1 False 3504 mRNA 0.50 6 72870852 72881264
TU334349 False 976 lncRNA 0.40 2 72870893 72871890
TU334351 True 701 TUCP 0.57 5 72876339 72880854

Neighbor


gene id symbol gene type direction distance location
LOC110504714 LOC106586779 coding downstream 32399 72791304 ~ 72838453 (-)
LOC110504707 NA coding downstream 87978 72776716 ~ 72782874 (-)
LOC110520531 LOC106582025 coding downstream 328724 72490848 ~ 72542128 (-)
LOC110520529 LOC106586732 coding downstream 604202 72264378 ~ 72266650 (-)
LOC110504660 LOC106582021 coding downstream 664034 72121974 ~ 72206818 (-)
fhl2a fhl2 coding upstream 144024 73025288 ~ 73039384 (-)
uxs1 uxs1 coding upstream 281252 73162516 ~ 73266610 (-)
st6gal2a st6gal2 coding upstream 456906 73338170 ~ 73505121 (-)
LOC110505436 LOC106581976 coding upstream 665935 73547199 ~ 73561315 (-)
grk1a grk1 coding upstream 710520 73591784 ~ 73597306 (-)
G294720 NA non-coding downstream 39546 72830782 ~ 72831306 (-)
G294715 NA non-coding downstream 49542 72819132 ~ 72821310 (-)
G294714 NA non-coding downstream 51200 72818606 ~ 72819652 (-)
G294691 NA non-coding downstream 70995 72764953 ~ 72799857 (-)
G294648 NA non-coding downstream 174829 72695469 ~ 72696023 (-)
G294760 NA non-coding upstream 3765 72885029 ~ 72887639 (-)
G294762 NA non-coding upstream 11073 72892337 ~ 72892537 (-)
G294763 NA non-coding upstream 11754 72893018 ~ 72893271 (-)
G295738 NA non-coding upstream 66744 72948008 ~ 72973805 (-)
G295750 NA non-coding upstream 81043 72962307 ~ 72962674 (-)
G294697 NA other downstream 94245 72775407 ~ 72776607 (-)
G294451 NA other downstream 295420 72571249 ~ 72575432 (-)
G293984 NA other downstream 966944 71903314 ~ 71903908 (-)
G292919 NA other downstream 1830700 71027619 ~ 71040152 (-)
G296011 NA other upstream 691028 73572292 ~ 73572911 (-)
G296043 NA other upstream 750774 73632038 ~ 73633036 (-)
G296102 LOC106586753 other upstream 891890 73773154 ~ 73775299 (-)
G296100 LOC106586751 other upstream 927218 73808482 ~ 73809596 (-)
LOC110520572 cep97 other upstream 991709 73870489 ~ 73877576 (-)
LOC110520539 mfsd9 other upstream 4449 72870852 ~ 72881264 (-)

Expression



Co-expression Network